Array 1 1131950-1130663 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033391.1 Streptococcus dysgalactiae strain SCDR-SD1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1131949 36 100.0 30 .................................... ATAATCTTTAGTTTTAATTTGTAGTGAATG 1131883 36 100.0 29 .................................... AATTCTTTATGTCACTGATACACAGATGT 1131818 36 100.0 30 .................................... GATTAATATCGCCCTTATCCCCTTTCTCGT 1131752 36 100.0 30 .................................... GATTTTGGCAATTGTCATAGCATTATATGC 1131686 36 100.0 30 .................................... AACTCTATTTTTAACGACACGTAAAACTAT 1131620 36 100.0 30 .................................... ATTTTTTTTGGCAGAGAGTTATATCTATCT 1131554 36 100.0 31 .................................... CGTGGCGCTTAAATGCTCCTATGACACGCTC 1131487 36 100.0 30 .................................... ACACTTTTTTGCCACACAAGGACAGATAGC 1131421 36 100.0 30 .................................... ACGATCTTAGCAATTGTATGACAGGAATAT 1131355 36 100.0 31 .................................... ACACTTTCACTTGCAAAACGACTGTTGGTGT 1131288 36 100.0 29 .................................... GTTTGATGTCAATTTCTAGGTCATGTAAA 1131223 36 100.0 29 .................................... AATTTGATCAGACAAATGAAATCGACTTG 1131158 36 100.0 30 .................................... CATACTCATTAAGCGAGTATAAAAAATCTT 1131092 36 100.0 30 .................................... TTGATGGTTATCTTGAGGAACAAAGACGAT 1131026 36 100.0 31 .................................... AACAACTTGCTAAACTAAATCAAAGTCAACT 1130959 36 100.0 30 .................................... GCAAATATATGGACAAAATACAACTATTGT 1130893 36 100.0 28 .................................... GGTTTAGGAACTTCCATACCTCTTGCTG 1130829 36 100.0 29 .................................... TTTTGTCATTGTACAAGATCTTTAAACTT 1130764 36 100.0 30 .................................... CCTTTTATGAGTTATGCTTAGCCAAGATGT 1130698 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATAAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : TAATTNNGTGAATAGGTTACACTAAACTAGACAGTCTTATAAAGTGTTCTACACTAAAGAAAACAGGAGAACAGATATGTCTAGAAAAATACGTCGCCACTTCACCGATGATTTTAAGCAACAAATTGTTGACCTCCACAATGCTGGAATGAAACGAAGTGAGCTTATCAAAGAATATGAGTTAACGCCCTCAACCTTCGATAAGTGGGTCAGACAAGCCAAACTAACGGGTTCCTTCAAGTCTGTTGATAATATGACAGATGAACAACGGGAACTGATTCAACTCAGAAAACGCAATAAAGAACTCGAAATGCAATTAGATATCCTAAAGCAAGCGGCAGTGATTATGGCACGAAAAGACAAGTAATCACTGCAAACAAGGATAAATACAGCATTTCAGCTATGTGTCGTTGGCTGAACATCCCGCGCTCAAGTTACTACTACCAAGCTGTAGATCCTGTGTCAGAGGCTGATCTCGAGGATAAAATTACCTATATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1581978-1581015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033391.1 Streptococcus dysgalactiae strain SCDR-SD1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1581977 32 100.0 33 ................................ TTTGTTGGCGTACTCGACCAACATTGCTTTATA 1581912 32 100.0 35 ................................ AGGGTATGCGACAAGCACGAGTTATCCTCTTATAT 1581845 32 100.0 34 ................................ TTTTTCTAACGGATTAGACATTGCTCTTAGATGA 1581779 32 100.0 35 ................................ CTATTGCATTTAATGCAAACTCCATATTTTTTATC 1581712 32 100.0 35 ................................ TTTATTGAATTAAAATTAAAGTTTTTTGAAAACGA 1581645 32 100.0 35 ................................ AATCTCATTCGATAACCTTAAAATTATCATTTGCG 1581578 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1581512 32 100.0 34 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGAT 1581446 32 100.0 37 ................................ ACTTGTATCGTATAACACATTCAAGAAAATTCGCAAG 1581377 32 100.0 34 ................................ GTAATGTTGTGCTACCTTTGGTGCAGACGGAACT 1581311 32 100.0 34 ................................ TAGTGTAACCGTAACACAACCACTAACATTTACT 1581245 32 100.0 34 ................................ GCTATTATTATTACAATTCAAGTAACTTTGATAA 1581179 32 100.0 34 ................................ ATCTCAATTGCGCCAACTTGTGTTTCGTCAGTCA 1581113 32 100.0 35 ................................ TTTTCTAACGGAATTAGTACTTTATCTCTTAATGC 1581046 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.4 35 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATTGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATTATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGTTTGGCGGGCAATGGCGAGGTTGTGGCAGTGTCTAGTCGGTCGCTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACAGCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //