Array 1 401596-401384 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000021.1 Streptomyces albidoflavus strain CR47 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 401595 29 100.0 32 ............................. TTCTCGAAGCTCTTCGCGGCCTGGTCCGCGTA 401534 29 100.0 32 ............................. AGCTCGCGGGTGATCGGCTGGTCGACGATCAG 401473 29 96.6 32 ..............T.............. GGGTCGTCGCCCTTGTCCGCCGCAAACACCAC 401412 29 75.9 0 T........T...GT.......C.AC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Left flank : GCATGAGCTGACGCCGGTTCTCTTCACGGTGGCGGAGGCGGGCGATCCGGTGGCGTCCGGGCTGGTGGACCGGCTGGCGGACGAGGTCGCCAACATGGCCACGGTCGCGCTGGGGCGGCTGGGGTTGCTGGACTCGCCGGCGCCTGTGCTGCTGGGCGGGAGCATCCTGGCCGCGCGGCGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAGTTGGGCCGACGGGCGCCACTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCGGTGCTGGGGGCGGCGCTGTTGGGGATGGACGCGGTGGGGGCGGGGGTGGGGGCTTATGAGCGGGTGCGGGGGTGGTTCGGGTGAGGAGGCTGTGTGGGGGCGTGGGGTGGGCTTCAATGGAGAGGGGCTGGCGTTTGCGAAGCTGAGGGATTTTATGGGCTGTTCGCGCGGAATGCCGGAGTTTCTAAAGTTGGCGCGGGTCGGGGGTAGGGCGGGGTAAACCCGCAGCTCGGAGAGA # Right flank : TGCTCTGTGATCACGGCGAGCAGCAGGGTCAAGCGGGTGCTCACACATGCAGGCCTCACCCACGCCGACCCCGACCCAGTCGCCGTACTCCGCCCCCCAATCCCCCACCCCCGGGAACCAACCCCACCCTCCACCACGTATCCCCCACAGAGCCGTCCACCGCACCCCCCGCCCACCCGGGCCCCAGCCCCCGGATCAGGTGAACGCCCGTGTGGTTCGTGGGGAGTGCGGCCATACTGGCGGCCGGGCACTAGCTTTCCCGGGAGTGGGGAAGGGTGTTCTGCGACAGGACCGAGGGGGAGGTCGCGTGAGCAGTCAGCCGACGGGCGGGGCGCCGCCGGGGTCCGGCATGGGTGCGTTGTCGGTGCCGGGGCAGCGTTCGCCCGCGGCTGCTCCTGAGACGCCCGGTCCGGCCGGTGAGCCCGGGCATGTTCCCGAGCCGCCGCACGAGCCCGGTCTGCCCTCGCGGCTGCGGGCGCAGGCTCGTACCGTGCCCGGGG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 653317-653535 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000021.1 Streptomyces albidoflavus strain CR47 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================= ================== 653317 26 100.0 39 .......................... TTGAACGGACGAGTCCGATCCGGACCTCGGCCCAAAACC 653382 26 100.0 38 .......................... TTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAAGT 653446 26 96.2 38 .......................G.. CTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 653510 26 96.2 0 ........................C. | ========== ====== ====== ====== ========================== ======================================= ================== 4 26 98.1 39 CAGCCCGGCCGGCGCTTGAGGCCATC # Left flank : CCAGGGCCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGTACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAAGGCGCCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACAACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAACAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCCGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGGCCCGAACGAACTGGTCCCACCGACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAACTGGCCGACCGCCGAAAAA # Right flank : CCCACCGCACCCCCTGCCGGGGAGGGAACCTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAAAACCCGGCAAGCGGCTCCCGGGCAAAATCAAGGGAGTCCCGCAGCACCCGCGCGACCTCATGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGGTCCCCGGGATCGGCCTGCCGCTCGACCAGACCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGTCGCCGGGCGATCTGCCGCATGGGCATCGCCTCGAGGGACAGCAGACCCAGTACGCGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGACGC # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 903335-903485 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000021.1 Streptomyces albidoflavus strain CR47 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 903335 29 100.0 32 ............................. AAGCAGGTCATGACGATGCTGCGGACCGCTCG 903396 29 100.0 32 ............................. GCGAACTGCCCGTTCGGGTTGCATTCCAGGAA 903457 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Left flank : CGCTACCAGCTGTTCTTCGACGAGCGTTCGCTCGACGGGGACGTCGTCAAGGACTTCGGCGGAGTCAAGGTCGTGACCGACCGGATGAGCGCCCCGTACCTCGGCGGCGCCTCCATCGACTTCGTCGACACCATCGAGAAGCAGGGGTTCACCATCGACAACCCCAACGCCACGGGCTCCTGCGCCTGCGGTGACTCCTTCAGCTGAGTCGCTTCGCCGAGAGGCGGTGCCCCACTTCGGTGGGGTGCCGCTTTTTTTGCTGGGCTGGCCTCACTTGCCGGCCGGGCTCGGTGGCCTCAAGCGCCGGCCGGGCTTGAGTTTGGCTGGGCTTGGGCGGTGGCCTCAACTGCCGGTGCGGCTGCTGGGGGTTCTGGGAGAGGATGGGCGAGGCTTCGGGCGTGACAGGGGAGGGTGTTTGCTGACTTTCGACCTAATTGCGGCAATCTCGCAAGCTTGCAGAAATGGGCTGAGCTGCTAGGTAAAGCCGCAGGTCATCGAGG # Right flank : CCAGGAGCCGGGCATCTTCAGGCTGCCGAGGACGTGCTCCCCGTGCATGCGGGGCCCACGGAACCCAGGTCTCCCACCCGCTCAGTGCCACCACTGGGCGCACCAGAAGCCCCAGCCCAGCGCCCCCTCCCCTCAGAACGCCAAGATCGTGACCGTAGCCGCGTAGATCACCACCAGCAGCGCCCCGTCGAAGCCCAGGCGGAACCAGCCGCGTTCCTGGCGGATGAGGAGGCCGCCGAGGACGACGGTGGTCATGACCAGGGCGGCGCTGGTGAGGAAGAGTTCGTCGTTGCCGGCGGCGTGGTAGAGGGAGCCGCCGCGGTAGGCGAAGTCGCCGACGGCCAGGTTGAGGACGTCGAGGGAGTTGCCGCCGATGATGGCGGCGAAGGCGAGGGTGATGGCGCCGCGGCGGACGGCGGCGATCGAGGTGACCGCTTCCGGGAGGCCGTTGATGACGCCCAGGATCACCGCGCCGACGAAGCCCGCGCGCAGGGTGGTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44856-44063 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000001.1 Streptomyces albidoflavus strain CR47 Scaffold2_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 44855 37 89.2 36 ............C..T..........C..G....... ATTCTCCACGTGCCGGTCCAGTTCGTCAGGCGCGAG 44782 37 91.9 36 ............C....A....A.............. CAGAGCACGTGGCGCGGCATCACCATGCCCAACGAT 44709 37 94.6 37 ....T.......C........................ TCCGGGTGCCCGCTGAGCGCCTGCACACTGACGAGCG 44635 37 94.6 36 ............C.T...................... AGACGCCCGTCAGCGGAAGCCAGGGCGGCCATGTCG 44561 37 91.9 61 ..........T.C.........A.............. CTCCGGGGCGGCCGAGGATCGCAACTGGCCGGTCCAACGGGATCAGCCCGCAGGCCGTCGC 44462 37 89.2 36 ..........T.C.T............A......... GTCCTCCTGCCCCTGGCGGCGGCGGTCGGCCTCCTC 44389 37 100.0 35 ..................................... TCCGCCCGCTCCCTGCAGGCCGAGCAGGGCCCGCG 44317 37 100.0 36 ..................................... GTCGGCGCCGCCGGTGAGGGTCGCCAGCGCGCTGCT 44244 37 91.9 36 ............C.T.......A.............. CTCATCGCGGGCGGCACCGGCTCCGGTAAGGGAGAG 44171 37 86.5 35 ............CC....A...........C.C.... CACATCTCCTGGCGCAGGAGCAGATGCAGGTCGAG 44099 37 94.6 0 ............A........A............... | ========== ====== ====== ====== ===================================== ============================================================= ================== 11 37 93.1 38 GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Left flank : GAATCCTGTCGACCGGGGCAAGCACGGCTCGAAGATCCACCTGATCACGGAACGGTCCGGTCTGCCTATACCCGTTGGCATCTCCGGGGCCAACCTGCACGACAGCCAGGCCCTGATCCCGCTCGTCAAGGGCATCCCGCCGATCCGCTCACGCCGCGGACCCCGGCGGCGCAAGCCCGCCAAACTCCACGCCGACAAGGGCTACGACTACGTCCACCTGCGGCGATGGTTACGCCAGCGCGGCATCACCCACCGCATCGCCCGCAAGGGAATCGAGTCCTCGCAACGACTGGGCCGCCACCGCTGGACCGTCGAACGCACCATGGCCTGGCTCGCCGGCTGCCGCCGCCTCCACCGACGCTGCGAACGCAAAGCCGACCACTTCCTCGCCTTCACCAGCATCGCCTGCACTCTCATCTGCTACCGCCGACTCACCAAATGAGATGGGGGGCCGAGGATCGCAACTTCCATGCCGACGGCGCACGGACGTGCTGCTCGTG # Right flank : CTCGGCGGCCGCCAGGACGCGAAGCCCCCGCGCGGGGTCGCGGTCGCCCTGCATCGACGCGGCCTCGCTCGCCCCGCAGCTCGTCCTCGCCGGGCACCCGGTCACCGACGTGGCTGCCCTGCTTCGCGACCACGCCGCGACCGCCACCAGCCCCGCCACCACCACGGCGTACCTGGCGGCGCTCACCGGGCACTGGCACCGCAACGCCCGGCGGCCGGCGGCTGCCGGCGCCCCTGGCCTGCGGACCTACCAGCACCGTGCCGCCGCAGCAGGTCTCGCCCTCCTCATGACCCGCCTCTGACCACCGTCTCCGTGAACTCGCTCTCGGCGTGACCGGGTTCAGCCGAGATGGCGGCGAGGCGAGGAGGTACTTGCCTCGCCTCGCCCGCGAAGGGGAACCAGCGCGCTCGTCGGAGGGCTCCGCTGGTCGAACCTTGTACGCCGCCTGACAGCGTCCGGCGGGCGGCACGCAGCCACCGCCGGGCCCTCGCCCGCGCCGC # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCTTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCTCCCGGGGCGACCGAGGATCGCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1087867-1086679 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1087866 28 100.0 33 ............................ GCTCGCAAGCGGGACCCACAGTTCCCCCACCCC 1087805 28 100.0 33 ............................ GCCGCCGCCGACGCCCCCGCCGACAAGAGCGAG 1087744 28 100.0 33 ............................ CCCCGCGCACTCCTGCGCGACCGCCGGCGCCTG 1087683 28 100.0 33 ............................ TCAGCCCCGAGCGGGGCGCGCGGGGGGTCTCCC 1087622 28 100.0 33 ............................ GTCGCGGACGCGGATGGCGGCCTCGTACGCGTC 1087561 28 100.0 33 ............................ GATGCCGGTCGGTGAGTACGAGCAGATCCGCAT 1087500 28 100.0 33 ............................ GGTGGAGACCGCCGGCCCCCGGGGGACCTCCCC 1087439 28 100.0 33 ............................ GCCGCGAGCCCCAGTCCGGGGTCTCTGCCAGGG 1087378 28 100.0 33 ............................ GTCGTCGGGCCCCCAGATCTTCACGCCCTCGTC 1087317 28 100.0 33 ............................ GAGCTTGCCACGCGGCGAGGGTGGAGGCTCCTG 1087256 28 100.0 33 ............................ AGGTCAGGAGACGGGCTGGTTGGCCCTGAGCCG 1087195 28 100.0 34 ............................ GCAGGCCGGGCCCGTTTCCACCCCCTGGGCGGGC 1087133 28 100.0 33 ............................ GCGCAGGTCACCGCCACCGAGAGCCGGGCCGCC 1087072 28 100.0 33 ............................ CACCGCCCCCCGCCAGGAGCAGATCGTCTGGGT 1087011 28 100.0 33 ............................ GATCCCCATGTCAGTCCTCCGTCTTCAGGATGG 1086950 28 100.0 33 ............................ GCTGAGCCACGCGGCCCCAGCCGGAGACCTCTA 1086889 28 100.0 33 ............................ CCCGGGAGTCTTCTCCGCGCGAGCGGAGGTACC 1086828 28 100.0 33 ............................ TCTCGGCGGGGCCACCGGTCGTAGAGGAGTGGA 1086767 28 100.0 33 ............................ GCGGGCGGAGAAGGTCATCGGCTTCTCGGAGGC 1086706 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 20 28 100.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGGATCGCCGACCGCGTAGTGGTCCTCCACCACGGCCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGTACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGAGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGGGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAGATGAGGCCCCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GGAGTGCGGCGCCTGACCGGTGTCGCCTCACCGCGGGGCAGGTCCACGATGAAGCCGAGGCCTGCGGAGAGGTCGTCGGATTTCTGCTCGTGCGAGCTCAGGGCATCGCGCAGCAGTCTGAAGTACTCCGCGGCGCCCTGCTCGTTGAGCTCGTGCCCCACGCGGGGCGGGCCGCCTGCGGTGCTCGGCGCGACCTCGTGGGCGATGAGCAGCCCCTGCTTCGTCATCTGCTTGAGGGCGTGGTAGATCGAGCCCGGCTTGGCGCTCGACCACTCGTGGGCCCCCAGCACTCAAGATCATTGCGCACCTGATAGCCGTACGCCCGTCCGTGCAGGACCGCGCCGAGAACCAGCAGCCGGATTGGTGACATGAGCATGCTCATTTTCCTGCACGCAGTTATGTCCGGATGAGTTCTATACAAGTTTGACTAGCCCAAAACTGAGGTACCTTCGTCGCGACTAATCAAGTTTGATCAAACGTCGGCGACCCTGCGGCGACAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1092668-1091298 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1092667 28 100.0 33 ............................ GATGAGCATCGACCGGTTCGAGGTGATCGCGAA 1092606 28 100.0 33 ............................ GGCGACACGGACGGAGTCCTCGGTGACGCGGGT 1092545 28 100.0 33 ............................ GCCCGGCCACCGCCCCGGCCAGCGGATCGGCCA 1092484 28 100.0 33 ............................ GTTGGCGCATACCCGCAGGTGAAAGCGCAGGAT 1092423 28 100.0 33 ............................ GCCGTTGCGGAGCCAGGCGGGGATCGGCTCGGT 1092362 28 100.0 33 ............................ GGGGGTGTCGACGCCGGCTGGCGTCTCGATGCT 1092301 28 100.0 33 ............................ GCGCCATGCGGGCCTGGGACTCGGTGCCGACGA 1092240 28 100.0 33 ............................ GAGCAGGAGGCTCGCGCGGCCCGTGCGGCCCGC 1092179 28 100.0 33 ............................ TCGGGATCTACCAGACACGGACCCCCGACACTC 1092118 28 100.0 33 ............................ AGCCACACGAACAACGCCACCGCTCCGGAGGAG 1092057 28 100.0 33 ............................ CCGTGGCCGGCCAGACCGTGCCGCTCCAGAAGA 1091996 28 100.0 33 ............................ GTGCGGCCGGTACGCCCTCGCGGGCGGCGTGAC 1091935 28 100.0 33 ............................ CAGGACGGCCAGGACGGCGGCGAGCAGCTCGGG 1091874 28 96.4 33 ..A......................... CAGGGGCGCCTGACACGCGGTGTCCTCGTTGCG 1091813 28 100.0 33 ............................ ACGCGAGGTCCGCGCCCTGCTCGGCCACCCCGG 1091752 28 100.0 33 ............................ TCCGCAGACCCTCTGGCAGCACGAGCAGGGCGA 1091691 28 100.0 33 ............................ CCAGTTCCACGCGGTCCGAGGGCGCGGATACCC 1091630 28 100.0 33 ............................ GTCGCGCGGGACCCGAAGCGTCACCTTGGCGTT 1091569 28 100.0 33 ............................ GGAACCACCCGCATGAGCACCACCGAGACCGAG 1091508 28 100.0 33 ............................ GCCGGGGTTGGTCGGGGCGGTGCCGTAGACCGT 1091447 28 100.0 33 ............................ CTGGGGCGGGGCGGCGGGCACAGGTCCAGCGAT 1091386 28 92.9 33 ........................T.T. GCAGCTCGGCCTCTGCCGACGCCTGGGCATCGC 1091325 28 92.9 0 ...........G...............T | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGATCGTCGTTCCACTCGCCGCGTTCAGCTTCACCACGCTGTCCAGCATGTCCTGGTGGCGGAGCACCGACAACCGTCCGTTCCTCCTGGGTCGCAGGCACTCGCGATTCATGATGATCTTCGTCGTAGCCCTGTCCCTGATGGCCGGCTTCTTCGGCTCCGCCCACCAGAACACCGTCGCCCTGCTGCTGTCCGCGATGGTCACGACCGCCGGCATCGCCGGCCTGTGGCTCCTGCCGCCTGCCTTGGCGCCGCAACTGCTCGATCTACGCCCGAAAAAGTCGACGCCCGACCCGTCCTGACGACGCCTTGAAGCGGCGTCCCCGCTTCCTCCTTGTGACACCCTCCGACTCCCCACGGTAGGCGAGCCTCTCGCGGAGGTCGCGTACATCGCGCTCTCTGAAGACGATCCCCGCCATTCGCTCCCGGCCCACGAACGAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CAGTTTCGGAACGGGCGGGCGGCGCCTTGTCGGGTGGGCCTCCGGGGGCCTCCTCGGCATCCGCACGCCCCCTACCGTCCCAGCCTGGCCCGACGCACTATGGCTCTCCCGGCACACCCGCCGGTCCAAGCGGAGGGGCGGCAATTAACGCCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGCAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGCCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGTGGCTGGGTCAACCCTTGGTACGAGGGGCACGGCGCGCTGCCCACTGCCCAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGATCTACAGCAGGCCGAGGTCCGTGTCCGGCCGGCACATACTGCAGGCCTCCACATTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1102157-1101947 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1102156 29 100.0 32 ............................. GCGTTCGGCGCGCCGTCGTACCCGATGGCCGG 1102095 27 89.7 32 ........T..........--........ CCCGTGGACCTGACCACCCCCGAGGCGCAGGC 1102036 29 96.6 32 ............................C CCGGGCCCCCAGGGCGCGACCCCGCACCCCTG 1101975 29 93.1 0 .............C..............C | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.8 32 GTCGGCCCCGCACGCGCGGGGATGCTCCG # Left flank : TGCGCGTCAGCGCCATCCCCGCCGTGCACCGAGGGCTCCTCGCCCGCTGCCAGCCGCTCGACGGCGGCCATGGCCTCCCCGCGATCCCGGCCCAGCGCAAGGCCCGCCGCGAGTACGAGAACAGGGTCAGCGCCCTTATCCCCTGAACAAGATCGTTCTCACCGATAACCGCTGTACCGATGTCCCCCGAGGCCGGATCAGTGGGGTCGGGAGCGCGACGCCACCACAGCCAGCTGGCGGCACCGCACCGCAGGCCCTGCCTCCGATCAGCCCTCGCTACCCCTCACCGAGGCGCTCATGATCTGTGTGCCCGGCCCTGCTCGTGGACGGCCCCGCACCCATGTGCTCTGTGGTTCACCGGCGCGCAAGAGGCGCCGGTGGCTGGGGCGTGGCTGTCCGACTCCGCCGGGCACGTCCGCATCCGGCTCCACGGCCCCGACAGCGAAGCCCTCCAGGAGGCTGGCCTCGCGACCATCCGCGACATGATCAGCAGAGGAAGT # Right flank : CGCAACTGGATGCGCTTGCCCTCGAAGGGCGTTCGCCGCCCCCACGGCAAGGTTCTTCTCCCACCGACGACCGGGACAAGTTCTGGCGCGATCTCATCAAGGCCATGACGGAACAGGCCCGCCATCTCACCGCCGACACGCGGGCGCCGAAGACCCGGCCGACGCCCTGCCACTCTTCTCATTCGGTTGACGCGCCGACCAGACTGCCCACGCAAAGCTCTTGCCAAGAGAGGTAGAGGTCGTCGGCTGCGTCCTGAAGGCTGCAGACCTGCTTTTACTGTCGGCGACTGGGCCTCGACGGTCGACTGGTGCCGCCATCGAGGCCGTCTGTCATGCCGAGGGGACGTCCTTGAACGTGTGGGTTCGATGCCACTGGTAGTAGGGTTCTCCGTTGGCGTTCCACCATGAGATGGTCCGGCCCTCCAGCTTCTCCCGGATGTACGTGGCGACTTCGGGGCTGTCTGCCGCCAGTGGACTCACGCGAAGAGCGCCGGCGGGAT # Questionable array : NO Score: 5.29 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1115522-1114761 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1115521 29 96.6 32 ............................T CGACTCGGCATAGGTCTCGTCGTTCACGCGCC 1115460 29 96.6 32 ............................G TCGAGGCGGCCATCGCGCAGCACCACCAGCTC 1115399 29 96.6 32 ............................T TCGAGGCGGTGGTAGGTGCCGATGGCCCGGTT 1115338 29 100.0 32 ............................. CATCATCGAGGCGGGCGACGACGCGACCCGCG 1115277 29 100.0 32 ............................. TCGCTCACCGGATCTGCTGCGGGACGGCGGGC 1115216 29 96.6 32 ............................G CGTGTATCCGAAGCGGTGCAGAGGCGACTGCT 1115155 29 100.0 32 ............................. CCCAACCCGGCGCCACACACCCCGATCCCCAC 1115094 29 100.0 32 ............................. GCCGAGAGCGGCCGGGCCTGGACGCCCCGCGT 1115033 29 100.0 32 ............................. TCCCCGGAACCCCACGGCTGACGACGTTCGCG 1114972 29 96.6 32 ............................G CTGCCGCTCGACGGCGACCATGGCCAGCTCGG 1114911 29 100.0 32 ............................. TGGCAGCGGGTGGCGTTCGTCCTCCCGCTCGT 1114850 29 89.7 32 ....A........C..............T CCGCAGGCGCCTGTCTCCGGGCCTGCCGCGTC 1114789 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTCGGCCCCGCACGCGCGGGGATGCTCCC # Left flank : GTGGGCGGAAGCGGTCCGCGATGCCGTCCGACCTGCGGCGTAGTATCCGGCCGTGGACATCCCCGACACCTTGATCGACCTCCAGCGCGCCGCCGACGCTGAGTGGGCGCGCCTCGCCGAGCTGACCGACAACGACGAGCGGGGGCAGCAGGGGCGCGCGTGGTACGACGCTGGCGCCCGGGCCCAGGCCGCCGTCACCGAGTGGGCGCGTGAGGCCGCGCGGCAGTCGGCCCCGCACCCATGGAAATCTCGCTCGCGACAGTCCTCGCCCTGGCGCTCTGCGGCCGGCGGGCCCACTGGGTGCTGGGCGCACGGCAGTTGCCCACCGAGGCACATGCGTGGGTGTGGACCGAGAACGGCGCATTCGGGCTGTCCGGCCGCGACCGCCCCGACCCCCGCCGCCTCTGGGCCGGCGCCCTCGTCGCACCTCCCGTGCCGAAAGGGTGACGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : TCTCGGGGACCATCCCCTGAGTAGGTGTTTGGGGACCATCCCCTGAGCTTGTTCTTTATCTACCAAGATCTTCCGGGCTTACCGATGGCCTTGAGGGTCTCGGGACGTTTGACGGTTTTGCCGACGTCGTAGCGGGGTGCCCGGCGCTTGTTCTTGGCACCGGGTGGCCGTCCGGGGCCGGCGCCGCGGGGTTTGGGAACACGGGCCGGGCAGGCGAGGTGAGCGCGGATGTTCCTGAACCCCCGACGGACCCGGGCGGGGGTGAGCCGGTCGGAGGCGGTGGGTTTCTCCCAGGGCCGGCGGAGGTCCGCGGCGAGGGGCCGGGCGAGCCGGAGCTGGGTGTGAGCGACGATCAGGATCCAGGTCCAGCGGTCCGCCGCCTCGGGAGTACGTAGTCTCGGGGTGGTCCAGCCCAGGGTCTGCTTCGCGAACCGGAAGGTGTGTTCCAGGTCGAAGCGGCGGAGAAACGCCTGCCAGAAACGGTCCACATCGTCCGGGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGCGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACTCGCGGGGATGCTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1119443-1118564 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 1119442 28 100.0 33 ............................ CGGCTGCGTGGTCGCAGCTCAGCGGCACTTCGG 1119381 28 100.0 34 ............................ CGGGCCATGGGAGGACTGGGAAGCGCTGGCCGAG 1119319 28 100.0 33 ............................ TGTGCTGCTGGCCCAGCCATGCGGTGACGCCGG 1119258 28 100.0 33 ............................ GTACGACGACGCCGTGGAGCAGCATGGTCGCCA 1119197 28 100.0 34 ............................ GTCCGTCCTCCTCCACGTCATCATCAGCGTCGTC 1119135 28 100.0 33 ............................ GGCCCTCGTGAACGTCCTCGCGGCCCTCCTCCA 1119074 28 100.0 33 ............................ GCGACCCCGTGCCGAGGTCACCGTCGACCGCGC 1119013 28 100.0 33 ............................ GGCGACCGTCACCGTGGTCCCGAAGATCAAGAC 1118952 28 100.0 33 ............................ CCACCCCAGGCTCCGCGCCGTCCGGCCGACCGG 1118891 28 100.0 33 ............................ CTCGACGGTGGGGTCGAGGGCGAGCCACAAGGC 1118830 28 100.0 22 ............................ GTCGGTGCTGCTGCGGACGATC Deletion [1118781] 1118780 28 85.7 15 C....TA.G................... CTCGGTGCCGTACTT Deletion [1118738] 1118737 28 96.4 33 .............G.............. GGTGGGCGCCGCGGGACGTGAGGGTGATTGTGT 1118676 28 96.4 57 .................A.......... CCAGCGACGGGCGGCGAAGAAGGCCAGCCGCAGGTGCCGGAACTTGATCTCCCAGGG 1118591 28 85.7 0 ....................C.A..G.T | ========== ====== ====== ====== ============================ ========================================================= ================== 15 28 97.6 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : ATGCGGGCGTTGCCTTACCAAGGTCGTGGACAGCGCAAAGCCACGCAAACAACCTGCGGCCTCGCCCCGGACCACCGGCCACCTCGTCCAGCAGGCCCCGCGTCGAAGGCGCAAGGAAGCTCTCCCACAGCCGCTCACCCACAGCCCCGGTATCAAGCAGATGCGACAGAAGAAGATTCGTCTGCCCACCGGCACGCTCCGCCGACTTCCCCCACAAGACCCCTAACGGGCCCTCCACCGACTCCAGCGGCACCCTTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACGACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCCACGGCGGGCGCCCGCACCACGCGGTCACACACCGTGCTCCCTGAACTCCACCACTCGCTGCCCGGCCCACGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCAACAGGGCTCTGGGTGGGTATGCAGGAGTCAGACGTGCGGCTGGTCATCTGTCGCCCCGCTGCCCACCGCGCCAGTAGCCTTAAGTGGGCAGGTGCGGTGGGCGGCGGCGGTCTCCGGGCTGCACGGGCTGCCGCACCGGTCGCAGACTGCGCGCACCTCCTGCGGGCAGCAGGGGCAGGCGCAGCGGTTTCGGACAGCGGGCACGCTGTAGCCCCCGATGTACCAGTCGGTGTTGCCGCAGCAGAAGCCGCATTCGCCGATGCGGCACGGTGCGCACAGGCCGCTCACGACCGGGCCTCCGCGCAGGCAGGGCAGGCGCGCGGGAACCACGAAGCCCACGGGCACTGCGGGTCCGGGCGCACGCCGAGGTCCACGGCCGTGGCGGTATCGAGGCGCCCGGCGCACCACACGCACTCGGTGCCCCGCAGCTGCCGCTCACCGAGAGCGGTCGGCTGCGGTAACTCCTGCACTGTCGTCGCCATGGTCATCCCCTGCCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1129614-1131195 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000014.1 Streptomyces albidoflavus strain CR47 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 1129614 28 75.0 117 .G......GT..A..A.....C..A... TCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT AA [1129632] 1129761 28 100.0 33 ............................ CCACCGGGTGGCCGGCCACCCTCCGCGTCCTCA 1129822 28 100.0 33 ............................ GCTAGGCCATCGCCCGACCCCGGTAGCGTACCG 1129883 28 100.0 33 ............................ TGCGCTTCTGTGCCTCCGCCAACTCCTCGTCGA 1129944 28 100.0 33 ............................ TCGGCGCATGACAGAAGCGTGGGGGATGATCAT 1130005 28 100.0 33 ............................ GTTGTCGCGTGCGGCGAGGCCGAGGGCGATGAG 1130066 28 100.0 33 ............................ CCCCTTTTCGAAGAAGGTGGCCGACACTGTCGC 1130127 28 100.0 33 ............................ CGGCTCGAAGAAGAAGGCGAAGCCCTCCGACTT 1130188 28 100.0 33 ............................ GGTGGGCGCCGAGCTACCCGGCGGCCGGTGGGC 1130249 28 100.0 33 ............................ GTGGTGGCAGGCGCGGGACTCGGCCGCCTACGA 1130310 28 100.0 33 ............................ CGGTGGCCGCACCGGCGGCGAGCATGAGCGTGG 1130371 28 100.0 33 ............................ GCTGCGGTGGCACCGGATCGAGCGTGACGAGGA 1130432 28 100.0 39 ............................ CCAGGGCGGCCGCGACGGCGGCGACCACGGCCTCGCGCT 1130499 28 100.0 33 ............................ GGTCGACCGTGAGCCGTCGACCGAGGACAACCC 1130560 28 100.0 33 ............................ CCGTTCGGGGATCAGTCGGGGCTCACCCTGCCT 1130621 28 100.0 33 ............................ CTCACGCCGCCGCTCCGGGCGGGGCTGGACGGT 1130682 28 100.0 33 ............................ GATCCCCTACTCCGCCGACCCGGCGATCTGCCC 1130743 28 100.0 33 ............................ TCACCGGGGCCTGGCGATCCGGTCGGGACCGCC 1130804 28 100.0 33 ............................ GAGCATGTCGAGGTCGTCGTCCTCGGTGTCCCC 1130865 28 100.0 33 ............................ CCTGGGGGTGGCGTGATGGCTCTGCTGGTCGAG 1130926 28 96.4 33 .......................G.... CAGCCACTACAACTACCGGGACACCGCCGCCTT 1130987 28 100.0 33 ............................ GGCGCGGCCCACCTGGTCGCGCGTCACTCGGTC 1131048 28 92.9 33 ......................CG.... GAGGTCATCCGCGACGGCGGCCGGACGTTCGCC 1131109 27 82.1 32 .....T.T........-A.....G.... GCGCGCCACGCAGGACCACTGGCGCACCTGTT 1131168 28 92.9 0 ..............C........G.... | ========== ====== ====== ====== ============================ ===================================================================================================================== ================== 25 28 97.6 37 GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Left flank : ACCGCATCGCCGACACCAAACTCCTCTCACGCATCGTCACCGACGTCAAAGCCCTCCTCAATCCCCCCGGTACCGACTTCGACACCCCGGAGACCAGCGCTCTCTGGGACGAACACGTCGGCACAGTCGCCGCAGGCACCAACTGGTCCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCCCCAGCTGCGCTCGGAGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACCGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGTGGCCACCTCACTCGCTGGATGGTCGAAGTCAACGCTGGGGTCTTCGTCGGCAACCCCAGCCGACGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCT # Right flank : CCTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCAGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAGCTTTGGGTGATCGAGCGGCCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGGTCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTTCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGTCCCCGCGCCTGCGGGGGTTGCTC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77988-78269 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKOD01000013.1 Streptomyces albidoflavus strain CR47 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================ ================== 77988 27 100.0 34 ........................... CCGAAGCGACCGGCACGTAGTGCCTCATCCAGCT 78049 27 100.0 44 ........................... CCACCCTCGCCGCCCGGGCCAGCCTGCCGCGCGCCGCCGAGGAA 78120 27 100.0 34 ........................... CTGAGCCGGCGCTGCCTTCCACCCGAGCGTCATC 78181 27 100.0 34 ........................... CCTTCCTCGTCACCAGCGCGACCGCTGGGACTCG 78242 27 100.0 0 ........................... | T [78267] ========== ====== ====== ====== =========================== ============================================ ================== 5 27 100.0 37 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : CGATACGGCTCGCCGCCGGGGGCGGTCGGTACGTGGACGACGGGCTCGCGATGAGCCTGCTCCGGGCGATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCGCAGGGGGATTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACTGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCCAGGAACCGGGTGGATGCGATTCGGATCAGTCGGGCGGCGGGGTGGGTTTGAGGGGGTGGGGTTGGGACTTGGCGGGTGGAGTGGGGTTGGGTCGGGCGAGGCCGAGGAGTGGGGTCGGGGTGTGAGTGGCTGGAAGGGGGGCGCGGGAGGTCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGACACCATGGAGGGAATATGAGGCATTCGCCTGCATTGCCGGAATCTTTGAATCTTGCGGGAGAGAGTGACTGGGCTAGGTGAAACCCCAGGTCAGCGAGA # Right flank : CCCTCCCGACCCCCGAGCAAGCACCCGGCAGCCGCCGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCTGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGGAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGATGGGAAGCGAAGGCAAGCTCTGTCGCAGCCCGCGCCCCCGCGTCCAGGTGGGCAGTCGGCTCGTCCAGGAGGAGCAGGGGCGTAGGTGTCAGCCAAGCCCGCGCCAAGGCGATGCGGCGGCGTTCGGATGGGGTGAGGTGGTCCGGGCGGAGGGGGCGGGCGGGGTCAGAGGCGAGCGGGGCCAGGGTGAAGGTGTCTATGGCTTCCGTGATGCGAGAGGCCGGGGCGTCCGGGGCGAGGTAGGTGAGGTTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //