Array 1 28705-29790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000001.1 Aphanizomenon flos-aquae FACHB-1040 contig1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 28705 36 100.0 34 .................................... GCGACACTCCGCGCACTTTATCTAATTTTTCTTG 28775 36 100.0 39 .................................... TTTGTGCTTGGGGTTGTTGAGCTGGCTGGGGGGTAGTCT 28850 36 100.0 41 .................................... TCTTGGTCGCGGACATAAACCTCATTATTAAAGATTACAAA 28927 36 100.0 43 .................................... CTTAAAGACGGCGCGGAATTTAATAATCCATTTCTTAGCTCTT 29006 36 100.0 37 .................................... TTTTTGGCTTCAACAAGGAAGTTGTCTTTGTCATCAA 29079 36 100.0 36 .................................... GTAGAGAATCTTCTGGCATCCAGGGCAACACTTGAA 29151 36 100.0 41 .................................... TTGTTCTTGCGCCTTCGATTATTGCATATCCGATTTCTGGA 29228 36 100.0 36 .................................... TATCTATCCGCGTAATACTTCCAGGCAATTCTAGAA 29300 36 100.0 37 .................................... CTACGACGGAAAGAGTTGGCATCCGGTGTATTTACAT 29373 36 100.0 45 .................................... GGTAAGATTACTAAATCAGACTTAACTACTTTTGCTTTGATGTGA 29454 36 100.0 36 .................................... GAAACATTTAAAACATTATTATCATTAGCCATTATT 29526 36 100.0 40 .................................... AGCGTAATTTAGATGTAGCGTAGAGGGAGTCGATGCACAG 29602 36 100.0 42 .................................... CTTTCAATATTTCTTCTTCTCCAATCGGCTGCTCATTAATAC 29680 36 100.0 39 .................................... TTCTAATAGGGAATTAATCTTTACAGTTACCTTTACGGA 29755 36 80.6 0 ..........................C..GAT.TGA | ========== ====== ====== ====== ==================================== ============================================= ================== 15 36 98.7 39 ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : GGTTTTGATTTGGAATGGTTGTAAAAAACGTACAACTCTATCTCCGGCTGTGGCATTTGCAAAGGTGGCAATAGTAACTAAAATAGTATTGATAATTACTGCTGCTAGTCCTAAAGGTGCTATTAGCAAAATAATCAGTGTAATTGTCCCATTAAGAAATGCAACGGCTAAGTTCCGCACTAAGGCAGCACGATTAGAAATATACATGGTTTAGTTGGAATTCGGTATTAATTGTACTTTTTTAAGTTAAATCACACAGAAAATTTATACAAGTGATTTTATGCGAATGACGAATTTATTTATTTGCGATGATTTGTTAGCGGCGGGGTCAGGTCAATGGCGGAAATGCTGATGTTTCCGTTAACCCCGCCGATGTCTCTCTGTATAAGGGTTTCAGGGTTTTTTATTGCCTGGTTATTTTCGGAAAGTAGCCGCCAATTGATACCCCGTCGCAAATGGCATCTAGACATTAGGCACTGTATGGGTTTAGAATGATGGGT # Right flank : AGATCCCCGACTTCTTAAAGAAGTCGGGGATCTTTGGGTTTAGGATATTTTAAATTTCCTCATTCGCATGAGAAGTATTGAATAATCACAAAATTGAGATTATGTTGTTACACGAGATGTAAACAATATAATCAGATTGGTGGGGGAAATTCTACAATGTCAGAACAAAATAAAGATCAAGATCAAGAAATTTTACGTCAATATCTTGATTCAATTAAGGAAGAAGAAGAACATAAAAAAGTACAATATTTAGCACGCCTTTCTAGATTAAATATAGGGATTGCTGTTTTCCTTTCTCTGCTCATTCCCATTGGTGGATATTGTTATACCCGACGGTGGAAAGCATTTCTATGGCTTATGTGTGGTGGGGCTTTAATAGGGGTAGTAGTTGCTGGAAGTTCTCGTAATAATGAAGAAGCTATGGCACGAGCTTTTGGTATAGGATCAGTTGCGGGGACAATTATTGCTCCTATTGATAATGCTTTGGCTATTTCTCGCGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 9259-9588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000098.1 Aphanizomenon flos-aquae FACHB-1040 contig98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9259 37 100.0 38 ..................................... TTAATCAAAGAGAAGGGCAAAGAAATTTATGATACTAT 9334 37 100.0 37 ..................................... CTTTTTGAATTCGTTTACCAAATGCAATTACTAAAGG 9408 37 100.0 34 ..................................... ATATACTGTCAAAAGTATTCTTGCTAGTTGTTAC 9479 37 100.0 36 ..................................... AACCTCAAGTTGTAGTTGATGTTGACCCATTAAGAA 9552 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.9 36 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : CAATTTTAATATCCACAGCGGTTAAAACCGCTCGTGTCGTTTCCCTCTCAGGTCTAAAGACGCTGAGTTTCCCACTTACCGGGTATTCTTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATCTTTTTTTTGGCAAACCATAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAACCTTGAATCCCTTGTCCAGTATTGATTTGACTCATTTGAAGAGTGATGAATGTCCTCCATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : AACGACATTAATTTGCGAACTGCGACATATAATGTGCGAATGTACACAAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTAGCAGTGCTTAAGTTAAAAACTCTAACACACACATCACATCTTAACATTCAGGAACGACAGATTTTACATCTTTTTCCAAAAAAACTTCCTGTACCCGCTGCAAATCTAAATCAATTAAATAATCAATAGTCCAGTTAGCTTGACGGTGTAGCATCTGGAAGGGATAAGTATTTGCTACTCCCACCACTTGCATTTGGGCGCATTTAGCAGCTTGAATACCTGCGGGAGTATTTTCAATCACTAAACATTCATCAGGTTGTAAGTTTAATTCTGGATATGCCTGATTTAAGCGATAAACCGCCAGCAAATAGCCTTCCGGGTTAGGTTTATTGCTGCTGATATCATCCCCCGACACAATCACAGAAAAGTATTCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8536-5873 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000015.1 Aphanizomenon flos-aquae FACHB-1040 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 8535 37 100.0 38 ..................................... TTATCTCAATTGGAAGCATACTACCCATCTGAAGTAGG 8460 37 100.0 36 ..................................... TTGATTAACAACGGTTTGAAAATTCGTATCTGTAGC 8387 37 100.0 35 ..................................... GCTGATGACAACGTAATCAGACAGATAATAACAAC 8315 37 100.0 38 ..................................... AAATCAGTAGTTAACTTTAGAAAATTATCTTTTGTAGG 8240 37 100.0 34 ..................................... CATATTCTTCTACCTCCAAAATCTATCTGAGGTG 8169 37 100.0 35 ..................................... CAGCCCTATTCCCCATATCCTGAACTGCGGAACTA 8097 37 100.0 34 ..................................... TCCAATTATACGCTTATCTATTTGTAAACTTCTC 8026 37 100.0 36 ..................................... TATTCAGTCGGGCTAGTTCCCAATTAGCCTCTTCGG 7953 37 100.0 40 ..................................... AGGATTCATCAGTAGCAAAGCATCAATCTTGTCTGGGCAA 7876 37 100.0 34 ..................................... GGGAAGATCGACATCCAAGAGTTTCCCTAGTTTG 7805 37 100.0 34 ..................................... TGCTGCTAGAATATCTTTTTTCAAGGGAATATAC 7734 37 100.0 37 ..................................... AGACCATAGAAACAATAAATCTAGAAGTCCAGAAGAG 7660 37 100.0 36 ..................................... CTAATATTGTTGCAAAGAGAAAAAGTATTTCATCAA 7587 37 100.0 35 ..................................... GCAACCTCACGCCATCTACGAGATAACATCCCCAT 7515 37 100.0 37 ..................................... TCCGTTGAGGGGTAGGACTCCTGCGGATTGTAAGGGG 7441 37 100.0 31 ..................................... CGACGAGTACATGAATGTTGCTTAGAGTAAG 7373 37 100.0 35 ..................................... GTTTAACTCTTCGCCTGAAAGGGGGCGGTTTTCTG 7301 37 100.0 35 ..................................... CATCTGTTAAAATAATAGTCATGTTTAAATAAAAA 7229 37 100.0 35 ..................................... TATTGCCGCGCCCTCGGAAACCAAATTACCTAAAA 7157 37 100.0 35 ..................................... ATAATATAAGTAGTAATTTAGGTAAATTTATGTTA 7085 37 100.0 46 ..................................... ACTATTAAACTTGTATCTGACCCTAAGACTGCATCTGTGGGGTCAA 7002 37 100.0 33 ..................................... TCAATCCAACCCCTAATCAAAGGGGTATTTATC 6932 37 100.0 36 ..................................... CTTTCAATAAGGAAATGTGGGATTTGTGGGGACAAC 6859 37 100.0 39 ..................................... AAGACATCTTGGGCTTGGGTTAAGACTCAATACAAGGAA 6783 37 100.0 36 ..................................... GCATCTTCCTTGGTGCATCTATTAAAGATGGTAGAA 6710 37 97.3 37 ......G.............................. TTTCTGATAGAGAAGCCTTTGAAGCTGGTATGCTTGC 6636 37 100.0 37 ..................................... AAAGCAGCCGATGGAATCAACAGAGAAGATAGCAGAT 6562 37 100.0 37 ..................................... ACTGGTGGACAGGCTAACGACGTGATGGGTGAAGTGA 6488 37 100.0 35 ..................................... AGACTGCAAACACCAGATACAGGAATTAGGTGCAA 6416 37 100.0 33 ..................................... TTGAATGATGTTCGGGCTGAAATCAATGCCGAA 6346 37 100.0 36 ..................................... TAACACTGGGGATTCGTTGTAGTTCTGCGATCGCAT 6273 37 100.0 40 ..................................... TTATCTAATACTGAAACTTACGCCGCTATTGCGACTGCGG 6196 37 97.3 34 ............C........................ ATATTAATAGTAGCCAATTCGTCAAACTTCGTAA 6125 37 97.3 36 ............C........................ CAGGATTACGCCACAGATTTCTATGCCCGGTGTGGC 6052 37 97.3 34 ............C........................ GACAAGAATAAAACGCGAAATCAAAAAACTATTA 5981 37 97.3 35 ............C........................ TTGACCATAGAAACTCTATTTCTCTTAACCCATGA 5909 37 94.6 0 ............C................G....... | ========== ====== ====== ====== ===================================== ============================================== ================== 37 37 99.5 36 ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGGACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTCAATAAACTCATAAAACCTGAAACCGACAGCATTCGCTTTTACTTTCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGGGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAAGCATCCGCGCAACTGAACCTTGAAAACCACATATATATAGGCTTTCAGCACCCCGCG # Right flank : ATGAATGCGTTATTCTTATTGGAATAATTCTTATTCAGGACTTACGCACTTTATAAGTTCACATTAATTCTTTTTCAATGAGTTCAATTAATTACAGAATACTACGAGATTGGCTAGGTTCTACATTAGATTCTTCAATTATATGGACATGATGGGGAAAATTAGGTAATTTTGGAAAATGCTGCACATTATCCCAACGTTTTCTTAAATTTTCCTTTTGTTCATCCATCCACTGATAACGATAACCAAGGGTTACAAAATGTCCCTCAATAATAGTAAAGGACTCTGCTATTTCTAAGAAATCATTATTTACTAAAGTTAATCTAGCACGGAAATAACCACGATCCAATAAAATTTTTTCTTCCACAATAGCGATTTTAATAATAATGCGGCTGGTAGCTAATTTAATTTTTACTGTATTAATATAATCTTGTATTTCCATTGTTTAACTAGCTATTAAATTCGTATTTATCTGAATAGTATTTTGAGCATTAGTCCAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 74796-73401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000019.1 Aphanizomenon flos-aquae FACHB-1040 contig19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 74795 36 100.0 41 .................................... ATTGCAGATGTTCCGTTATCTACGGTAATGAGGATTTTATA 74718 36 100.0 42 .................................... TGTTTAAAATATCTTCATAAAGTTTTCCCTCAACATGAGCTA 74640 36 100.0 37 .................................... CATTTGTGATTGGTTAACGCTTCTGACTTTGCTTTCA 74567 36 100.0 44 .................................... AGTTTGTAGCCTGCATTTAATAAAATATTCTCGTATCTTGCGAT 74487 36 100.0 37 .................................... TTGATTGGGCAATATCCTGACGGACAAATGCCTCAAT 74414 36 100.0 42 .................................... TATTTTTAACTTTTTATCTATCGTGCAATCTAATTTGAATGA 74336 36 97.2 43 ................A................... TCGTCTTGCTCTCTAATGTAAACATTCCCCTGGTAAACTACAA 74257 36 100.0 45 .................................... CAGCTAGATAAGTTCTGTTAACCGAGTCTGGATCTGGACACTCAA 74176 36 100.0 33 .................................... TTTGGAGATAGGCTCAAAGGGTAAGCGGGGGAA 74107 36 100.0 33 .................................... CTGACATACAGTAGTTAGCGATCGCGTGTCCGT 74038 36 100.0 37 .................................... TTTAATTTGTGTTGGGTTTATCTTTACGTTTCCATTA 73965 36 100.0 44 .................................... AGGCAATTTGTGATCCTTGAATGAATTAACCCATATAGCATACG 73885 36 100.0 43 .................................... ATTATTTAAAAAGCTTTTGTTTCCAGTAGCTAAAGTTAAGTTA 73806 36 100.0 35 .................................... GAAAGAGTTAATTCTGGCTTGATAACTGACATGAT 73735 36 100.0 35 .................................... TCTTTGTAATGGTGTTTCACCATTTGCGCTAAACT 73664 36 100.0 38 .................................... ACCTCCGTGTTTATTCTATTCTTTGTATTTGTATTTTT 73590 36 100.0 42 .................................... ATGATCGTTGTCTCCTGTGTTTTTTGGTTACTTTACCTGCAA 73512 36 100.0 40 .................................... AACGCCACCACGACTAAAACCTTGCTGTTTTTGTAAATAT 73436 36 94.4 0 .........................C....A..... | ========== ====== ====== ====== ==================================== ============================================= ================== 19 36 99.6 40 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : GTGGTGCTAATCTGGCCATACCCTGATTCCTTTTTATAACTCTAAACCATTTTAATTATACTTATTTATTATCTCATAAAAATGGTTCGTTCACTTACGCCGCAGTGTACTAGAAC # Right flank : AGGGGAGGGAGGCGATCATCAGGAGTATATATAAATACATAATAAAATATTTACTGATATTTTGAGAATCAGTAAATTGTAACTATCAATGTTTGGTAAGGGAAACGCTGTAACTTGATAGCTGCATAAACAATAACCCATGTCAAAGACAAGAAAATATTTGTAATAAAACTCTCAAAGTGAGGAAAAGCTTACAGAGTAAGAGTTAGAGAAAACCTTACAAAAATCTTGAGATATTTTAGATTCCTAGACAAATACTGAGTCGCGCTCTTATAATTCATCTATAAGCTACACAGGGGATCTACCGATGACGGCAGAATATTGGCGGGCTAAGATTTGGGGGTTACTACATGACCCTGTATTAAAGGCATTACATGACAACACAGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAAGCTTGGGTTGAAATTGGCAAAACCCCCGATGATTCTCGTGGTAAAGCATTAGCAAATATACTATTAGCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 63331-64405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000027.1 Aphanizomenon flos-aquae FACHB-1040 contig27, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 63331 36 100.0 35 .................................... TTCCACCTTCCCGGAGCATATTAATGAACTGTTGG 63402 36 100.0 37 .................................... AATCTATCATTCTCAAGTGCTACTTGAAACAGATGAT 63475 36 100.0 42 .................................... TTTTTCTGACAAGTTATACAATGCACTTTAACTCCTCTTTAA 63553 36 100.0 38 .................................... TCTATGTGAGCATTATTTAGCCATACCATACATTTAGA 63627 36 100.0 40 .................................... TTTCTCTTTCCTCCTTTCTATATCGCAGTGATTTAGATAA 63703 36 100.0 41 .................................... TGTGGGGTCATATCTTTTATCTCTTCCTCTTCCTCTATACC 63780 36 100.0 38 .................................... CTTAGTAGTTGTAACTGATATTTAATTACTAGAATTTA 63854 36 100.0 39 .................................... ATCTTAATTCCTTTAGTTACTGTGATGTTTAACTAGACA 63929 36 100.0 37 .................................... CTTATTACTAAGAATACCCTTATCAATACGGATAGCC 64002 36 100.0 36 .................................... TTAACTATCAATTATTTTGTACCATCGCCGGGATAG 64074 36 100.0 37 .................................... TCTAATTCAACTCCGTAAAATTCAGTATTTTTTCTTA 64147 36 100.0 41 .................................... TTAAACACTTCATGACTTACGCCGTATTTTGCCTTAAAATA 64224 36 100.0 40 .................................... ATACATGAAGAAATAAGATGTTATGCAAGAATTAAGCAAG 64300 36 100.0 34 .................................... CAAAATTTACATCGAAAATAGTTCCGTCTATTTT 64370 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 15 36 100.0 38 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TCCCATAACGACAATTTTCAATGCTAACCTACTTATGTTTTTGTATGTGATTGCTTATGATATTCCCTGTAATAAACGGCGCAAAAAAGTAGCTGATTTATTGGAAGGTTATGGACAGCGTGTACAGTATTCTGTGTTTGAATGTCAATTGAGTACAGAAAAATATCAAGATTTACGTCGTCAGTTGAGGAAAAAGCTGAAGTTAGAAGAAGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTCTATCTCAAGTGGAAACTTGGGGTGTGGGAATACCTGTGATTGAACCACCTAGTTCAATTATTATTTAGTTGTTGCCGATGTTTGGGAAAAATAGCTGAAGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTATTGGATAAGGGTTACGCGGTTTTTAATGGTAGTTTTGTAGGCTGGTTGGCAGTGATTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCTTTGCACAGCAAGGGGTTAAAATGAAGGG # Right flank : GATATAGGCATTTCGTTGTCGTTACTTACTAGTACACTGCGGCGTAAATGAGATAACCATTAAATAGCCAGAACTTTACCTGTGTATGTCCACTTAAAAGGTTTAGCCATTGTTTGATTGAAATAGTTAATAAAGTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 13013-12610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000035.1 Aphanizomenon flos-aquae FACHB-1040 contig35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================= ================== 13012 23 100.0 53 ....................... ATTTTGATAAACACCGTCAATATATAAACCAGTCATCTCGTTTCCGCATATCT 12936 23 100.0 52 ....................... TCATCTAACTGAGAAACATCATGCCTTAATCGTTGTTGGTTTCCGCATATCT 12861 23 100.0 51 ....................... GGGACTTGTTGGGATTGTGTGGGGACGGTTGGGGGGTGTTTCCGCATATCT 12787 23 100.0 54 ....................... ACCCCCATAGCATTTCACTGATTGCTCCAGCTATGATTCCGTTTCCGCATATCT 12710 23 100.0 55 ....................... AAGTTAGTGATAGAGTCTAACTTCTCCATAATCAGAAGATAGTTTCCGCATATCT 12632 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ======================================================= ================== 6 23 99.3 53 AATCCCCGCAAGGGGACTGAAAC # Left flank : GTTAGTTCAGAACACAAGGCAGAATTATTAAAGGTTATCGCCAATCGTTCCCCAAAGGATGCTTATTACAGTCTTCAGTACCGACATGGGGATCATAATGTAACTATGCGGTTAAGAGCTTGGCGACCAAGAGTAGAAATTCTCTCACCTTATGATTTAAGACAGAAAGTTACAGCCGATATTGTCAAGGAAATAGGACTTTACCAGAATAATTGGCCAATTTAATGCTTTACTATTTGTAATACAGTAACTATTGACAATTAACCTGCTAAATTTTACACTCATATAAAGACAAATTTGGCAGACCTAAAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATCAGTTTCAGTTTGTGCTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATCT # Right flank : GAGACACTGCGATCGCTTCCCTAGCCGCAAGCATCGCTAAATAAATCATCAAATTCTAAAACAAATTGAGAAATTCCGTAACAACATCTATAGGACGATTATAACATTCACCAGCATCAAACCTAACGGTACGAATACCATCACGTAATAAAATCCTATCTCTTCTGTAGTCTCTAGTTTTTTGTGATGCTTCCTGGTGGTGGACTCCATCAACTTCTAGAATCATACACTTTTGTTTATAGAATACCAAAAAATCTATTTCTACTCTTTCCTTTGCTTGATTATCACTATTAGAAATAGGTAAATCAGTTAAATCCATATAAGCCCGACTATTAGCAAAGAATAAAATCCGTTGACTATGTAAGGCGTGGGCTATTCTTACTTCTGTTTTTGACCTGAAATTTAAACCACCCCATTGATATTGGGAGTTACTATCATCTGATGAATTTTGACTTTTAACTAAACTAATTTCGATTTTGATATGGCTTAATACACTTGGT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.63, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27600-30117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000035.1 Aphanizomenon flos-aquae FACHB-1040 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 27600 37 100.0 34 ..................................... CACAAGGTTGCTCATAAAATGACCTTTTGTTGTG 27671 37 100.0 37 ..................................... ATTAATTACGTCTCCACCTTGAATAATCCGATCCCTG 27745 37 100.0 33 ..................................... ATTGTCCAGAACTTTCTTAGCAATATCTAAGCA 27815 37 100.0 34 ..................................... ACTGTAAATCTTGCCAATCCTTGTCCGTCGTCAT 27886 37 100.0 34 ..................................... CTGGGCAGAACTTCATTTAAGTTTAATCTTTTGA 27957 37 100.0 37 ..................................... AAATTAAGTTAGCGATCGCAGAATATTTTTAACTCAT 28031 37 100.0 36 ..................................... GCTTAGAAGTCAAAGCACTCGTTAAGCTTCTGATAA 28104 37 100.0 34 ..................................... AACAACAGTCCTATCATTTCTGCCATAGCTTCAG 28175 37 100.0 37 ..................................... TAGATAATGGGAATAATTTGGGATACGATCTTGCCAA 28249 37 100.0 33 ..................................... AGGTAGCTTTAAAAGGGATAAGTTTGTAAACTT 28319 37 100.0 34 ..................................... TTGATAACAGATTTTATGCCATAAAAACATGACA 28390 37 100.0 37 ..................................... TACCGTATGCTGACAACAAAACAAAAGCATTATAATT 28464 37 100.0 40 ..................................... GCAATCACAATGCACATTCCTTAATTACATGAGTAGCCAG 28541 37 100.0 34 ..................................... TCATAGTAAGCTACTGCTTTTTTCACTTGTTCTA 28612 37 100.0 36 ..................................... TGGGTAGATTTTTTGATAGCTTCTTCAATATCTGAA 28685 37 100.0 36 ..................................... CACTCAAAAAGGTTGGGAATTGACATTAGGCTCAGA 28758 37 100.0 39 ..................................... TTGGACGATTGCATAGGGAGAAGTTGGACATGGGTATAA 28834 37 100.0 35 ..................................... AATAAAAGCTTTATAAAGCATGGTTATTACCAATA 28906 37 100.0 39 ..................................... ACCTTGATTAGGCTCATAAACATTACTAGCAAATGTGAA 28982 37 100.0 33 ..................................... TTCAAATGGAGATACCTGAGAACTTGAGAGCTA 29052 37 100.0 35 ..................................... TTTTATAAAAAGCTTTCATTTTAGTTAGCTCTAAT 29124 37 100.0 39 ..................................... AGGCTAACTGCAACTACAGTAGCCATTGTAGTTTTATCT 29200 37 100.0 38 ..................................... TGCTATTTCTTGGGAATTATTAACCGCTTGAGTGACAA 29275 37 100.0 33 ..................................... CTAAGTCTCCTGGCTGACCATATTCAGCTTCTA 29345 37 100.0 41 ..................................... TGATAAATAATTCCTTGATATGCCCTAAAAAGAATAGGGTA 29423 37 100.0 37 ..................................... TTCATATCCAGTAATCTCCATTAAGTTAAGTTGAAAG 29497 37 100.0 35 ..................................... ATAAGACTTGTGAGGAACCTTAACTAACAAAGCTT 29569 37 100.0 39 ..................................... AAGAATATCAACGATCCGATTCATTGCTTCGGGGTCAAG 29645 37 100.0 34 ..................................... TTCTAGTCCAAGATTTGTATTCCCTAAAGAATAA 29716 37 100.0 35 ..................................... TATTTAATCCACTTTTCGTGGATGGCAACTGGTAA 29788 37 100.0 41 ..................................... GACAATGCCCTTTATGCCGTGTTATATTAATTAAAGGTGAA 29866 37 100.0 35 ..................................... CGCGAATATTACCCCCCGAACTAATCAGAAAACAG 29938 37 100.0 35 ..................................... AAATCTTTGCCATTGAGATAAGCGAAAATCAAGGT 30010 37 100.0 34 ..................................... AGGACGATAGTTAGTGAACCTGCGGCGATCGCCC 30081 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 35 37 100.0 36 ATTGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Left flank : AAGCAATATTATTGCCAATTTTCCAAAATATGTCTGAAATCCAATAAAATCATGACGATATCAATAAGGTTTCAGGGTTTTGGCAATAGTATTGCTCTAAGGAACGCAAATTTAATAACCTGCAATTCTGACTTAACCTGAAATGGTGCGTTACGCTGTCGCTAACACACCCTACTTTTGCACTTTATTTAATTCATATTCCTAAGCAACAAATTTAGGGTAAAAAGAATTGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAGAGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CAGGACAATTCAAAATTCAAAAACAATATTTATCGGTGAATTGCAATTTCACTTACTCACTGTTTCCGCATATCTAATCCCCGCAAGGGGACTGAAACTAACCAATTGGAAGAGGTATCTTCCAGTGATTTGTATAATGTAAAAAGCTGACTTTTGAAATCAGTAATTATCTAGAACATAACAATTAAGTAATGTTAAGTGGTAATAAAATACTGTTATTAATGTTATACACACTGGACTAAGAACATGGGTCAATGGATAGATTTTCAACAGACTATTAATCAAAGGTTAATCAGAGAAGATTTAGACAAAGAGCAAACCAAAGTCAAAAATATGAATACCAAAGGACATGGACTTGTTCGGGGTATTGCTGGTTCTGGTAAATCCTTAGTATTGAGAAACAGAGTTGAGAAAATTATTGATGAATATGATGATATTTTGATTCTTAGTTACAATCGTTTCATGAATGGTTGGCTTACCTCAAAACTAGCAGAAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 3 34084-36662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQT010000035.1 Aphanizomenon flos-aquae FACHB-1040 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 34084 37 100.0 35 ..................................... AGGATGATTGTCATATTTTCCAGGTTGCCTTGGAT 34156 37 100.0 35 ..................................... ATTTTTGCTTGTCTTGATTCATGTGGTGCAGTAGG 34228 37 100.0 37 ..................................... TTCCCAGATTGGAAGATTTTGCATTTTAAATATGAAG 34302 37 100.0 34 ..................................... AGGTAAAATCCTTATTAAAGAAAGAAATACCTGA 34373 37 100.0 35 ..................................... CCAACTAACCCGCGCAGAGCTTGGATATTCCTACT 34445 37 100.0 34 ..................................... AAAAGGCTTAATTCCTCCAATTGGTCGGGAGTTA 34516 37 100.0 39 ..................................... AACAGTAGCTAAATCCATCGCCCTATTTGCTGGCAAGTA 34592 37 100.0 35 ..................................... AATAGCAAAACTAAGTGATTTTATTCTATCTACTA 34664 37 100.0 38 ..................................... ATTCTATTTAATGAGGGACGCATGATTTTAATGATTAG 34739 37 100.0 35 ..................................... TCATAACCTCATGGTTGAGAGTGAAGCTGAAAAAA 34811 37 100.0 35 ..................................... ACAGAATGAAGCTAGTACCACAGAAAATACTACCC 34883 37 100.0 37 ..................................... TTTCTAGCACCAAAGTTTGTACTACCGTCTGCTTCAA 34957 37 100.0 38 ..................................... ATTCACAGGCTATGAGTCTCACGCAAAAATTGCTTATA 35032 37 100.0 43 ..................................... GTTACTAAACAACAGGAATTGCAGATGTGATATTTTCATGCAA 35112 37 100.0 35 ..................................... AAATCATTGTCTTCGATTTCTATTTCTATAGGGTA 35184 37 100.0 36 ..................................... CATCAGATTTAAGATGCTTGTCACTGGGGATGATTT 35257 37 100.0 39 ..................................... CTGGTTGGAATGGAAAAGGAATTTTCATTAAACTACAAG 35333 37 100.0 35 ..................................... GTCAATGCTGCCAAAACTGTCCAGGTGGGATTTAG 35405 37 100.0 35 ..................................... ATTTACACCTTGACCATAGAATCGCCAACATGTGT 35477 37 100.0 34 ..................................... ATTTCCTTTGCTACTCCATTGCGTTGTGTCGAAT 35548 37 100.0 32 ..................................... CTCCGCAAGGTAGTGATACTTGCATTCGAGGA 35617 37 100.0 35 ..................................... TCTTCGTCGGCCGCGCTTGATTTGGAAAAAATATT 35689 37 100.0 43 ..................................... TATCAAACACTGGTCAATTCCCAAATGCGATCACTTACATTAC 35769 37 100.0 35 ..................................... AACTTGGTTGGAGGTATCTAATCTTCCAACTCCCC 35841 37 100.0 33 ..................................... CAATCCTACCTGAGCCACGCTCATCCAAGCTAT 35911 37 100.0 37 ..................................... TTCATCAAAGATTTCATAGCCACCTACAGGATAGGTC 35985 37 100.0 31 ..................................... ACCATCTTCAAACTGAGGGCAGTTTCGGGTA 36053 37 100.0 33 ..................................... AATGCTCACAGTGTCACTAGCTTTTCCGATTAG 36123 37 100.0 34 ..................................... TTCGGACTAACGATAAAACATTCAAGGGTATGTT 36194 37 100.0 34 ..................................... ATCATTTAAGTTGCTCACATCCACAGTGTCGAGT 36265 37 100.0 36 ..................................... GGGTTTCTAATGTGATTTGTGTCATAGGTTTGATTG 36338 37 100.0 37 ..................................... TCTACTCTAACTACCTGCAATGATATCACGTAATTGT 36412 37 100.0 34 ..................................... TTGCTTTTTCTCGCTTTTCTTTCGGAAGAAGACT 36483 37 100.0 34 ..................................... TGCACAAGAAATGTCATACTTTCTGATTAGAATT 36554 37 100.0 35 ..................................... AGTGCCAGTAACACCTGCAAAAAATGTAAATTTAT 36626 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 36 37 100.0 36 ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Left flank : TCAACGCAGTTCTGAAGGAAAACCAAGAGTTTATCCTTGTCCTCTAGATAGATTGCCATTAATTAGAGAAGCTTTTGAACACTTTCATCTTCTATAAAGATTCAATAAAAATATGAGCAATGAAATTGTAATATTTACACAACTCTAACAAAATATGATTCCTAGCGATCGCCCACAATTCTTGAGGGAAGCGATCGCCATTCGCTTCCCCCTTCGTAAACATCGCCCTAGCAAATTGTTGAGAGAAGCGATCAGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATACAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAGAGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CACAATAGGTAGATATATTACAATTAGTTATCTATTAATGGGATCGCCCATTTCTTAAAAAATCGCCCATTTCTTAAAAAATCGCCTAATTCTTAAAGCGATCGCCTAATTCTCAATGCGATCGCGTTCTTCTACAAAACGGTTAATGTGGGGATATTGTTGTTCAAAACTGTTGGATTTTGGCATCTTGGTAATTTAGAAAGCCCCTTCATATATTTCTGTCAACATATCATGAAATCCCCATTCTATATCTTCAGTATCTTTCATAATTTTTCGACAACGTTGTTCAAAGATATCTTTTAAATTAGCTTTGATAATAATTTCTACAACCTGCTGATATACACCTTCCATACTAAGATAAAATGGTTCATCAATATCTCCATAAGCATTGGTAAATTTGACTCCTTGCTCTACATAAAAAAGCATGATATCAATTAAAGTAGCTTGACTCTGACAGACTTTTTTGTAGTCAGAAATAGCTTTTTTCGCCACAGAAAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //