Array 1 158145-159140 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZF01000005.1 Pluralibacter gergoviae strain JS81F13 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 158145 28 100.0 33 ............................ CCAGTGGTCGCCGCACGTTTTCAACACCATGGC 158206 28 100.0 32 ............................ TTCCGCGCGGCGTGCTATGGAGGAGAGATATA 158266 28 100.0 33 ............................ AACGTAAAATTCCTTGTAGCGCTCTACGGTAAT 158327 28 100.0 33 ............................ CTTATCGCCCGGTATCATGAACAGGCCTTTGTT 158388 28 100.0 32 ............................ AGCTCGTCCGTTACCAGAACGAACTTTGGAAA 158448 28 100.0 32 ............................ AGCCGATAGCCCACTGGATTAGCTCATCCTGG 158508 28 100.0 32 ............................ AACCGGCGGCCGACCCTAACGGCGGTAACGGC 158568 28 100.0 32 ............................ ATTGTATACATTGAGGTAACCTTTTTGCAGGG 158628 28 100.0 32 ............................ TCGACGGCTGCCGTAATGCATTCCAGGCAACC 158688 28 100.0 33 ............................ TGTAGTTGTGAAAACGTTAGCGGAATACACTCT 158749 28 100.0 33 ............................ TTTGGAGTCACCATGCTGACGATGATTTATAAG 158810 28 100.0 33 ............................ CTTTCTTAACTTCCGAATGATCGGCGAGCCGAC 158871 28 100.0 32 ............................ GTCAGGAAGAATCCAGCAAAAAAGCCGAGCTG 158931 28 100.0 32 ............................ TGAGTCAGTCCAGATACGAAACCCCCGACTTT 158991 28 96.4 32 ..................T......... AAGCTGACGAATCCGGCGCATCGCTGCGCGCT 159051 28 96.4 33 .................A.......... TCATCAACGCCGTAGTACGCCATGAGTTTGCGC 159112 28 89.3 0 .......................CTC.. | A [159133] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGAAGCGCGCGACTGGCTGGCGGAGAAGGGCTACGACCGTGCGATGGGCGCCCGTCCGATGGCCCGCGTTATTCAGGACAACCTGAAGAAGCCGCTGGCCAACGAGCTGCTGTTTGGCAAGCTGGTGGACGGCGGCCAGGTGACGGTCGATCTCGATGCCAGCAGCAATACGCTGACCTACGACTTCCAGGCGGCGCAAAAGCGCAAGGCGGAAGCGGCGCACTGAGTGGCGGAAGCGTGACGACAAACCGGGCGAAAGCCCGGTTTTTTTATGTCTGTGGCCCGGTCCGGCCCGGCGGTGAAAACGAATATAAAGTCGGTATGCCGTTATCTGGTTTTATGAGCGACTGGGCTGCCTGCTTTTGCCGACCCTTTTTTTATGCGGGTTGGTAACATATTGATTTTCAATATGCATTTCAGGTGGTAATAAAAAAGGGTCTGCGCCACCAGAATCTGTTTTTTCTGTTTTATAACAGTGTGATAGAGTATTCGATGGTTA # Right flank : ACATAACCCATTGACCACGTTCCTTAATGAGTGCTACCACTAGACCAAATTCGGGAAGCATTACATCACGCCGCGAGGGAATCATGCAGATCCTGCCATCAGATTTAAAAACCATCCTCCACTCCAAACGCGCCAATATCTACTATCTCGAAAAATGCCGCGTGCAGGTCAACGGCGGGCGGGTGGAGTATGTTACCAGCGAAGGCAGCGAGTCCTGCTACTGGAATATCCCTATCGCCAATACCACGGCGGTTATGCTTGGCATGGGCACCTCGGTGACGCAGGCGGCGATGCGCGAGTTTGCCCGGGCCGGGGTAATGGTCGGTTTTTGCGGCACGGACGGTACGCCGCTGTATGCGGCCAACGAAATGGATATAGATATCTCATGGCTTTGTCCGCAGAGCGAGTACCGGCCGACAGAGTATCTGCAGCAGTGGGTCTCTTTCTGGTTTGATGAAGAGAAGCGGCTGCAGGCGGCAAAGCGATTTCAGCAGGTCAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 168348-168676 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDZF01000005.1 Pluralibacter gergoviae strain JS81F13 contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168348 28 100.0 32 ............................ ATTGATGGCAACATGGGTCATCTGCTCGATGC 168408 28 100.0 32 ............................ GTACGAAAACACACTCATTGAGTGTATAGTAA 168468 28 100.0 33 ............................ TACGAAAATACGATCAGGTCGCATACGCAGGAT 168529 28 100.0 32 ............................ ATCAGTATCGGCAATGTATATCCCGCCATCCC 168589 28 100.0 32 ............................ GTAGTCATCGTCAGATGGCATACGAAAGTAGG 168649 28 82.1 0 .....................CCCA..C | ========== ====== ====== ====== ============================ ================================= ================== 6 28 97.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGCGCGGAGATCGCCGCCGTACCTGCGGGCGCCCGGTGGCGTACCGTCAGCCGCGCGCAGGTGAAAAGCAGTCCGCAGCGCCTGATGCGCCGCTCGGTGCGCAAGGGCTGGATTTCGCAGGCGGAGGCCGATCGGCGGCAGGCAGTTACGCCGGCCCGAACGCTGAATCTCCCTTATCTGAATCTGAAAAGTCTCTCCAGCCAGCAGCACTTTCGCCTGTTTATCGCCCACGGCGAGCTGCGCCCGACACCCACGGCAGGAGCGTTTAGCAGCTACGGGCTAAGCGCAACGGCCACCGTTCCCTGGTTTTGACCTTACGGACCGCGGTTTTCGCCGCGGCCTTTTCTTTATTACGTTGCGGTTATGAAAACCCTTTTTTTGAGCAATGATCTAACGTATTGATTTTATTTAACTGAAAACGTGAGGTAAAAAAGAGGGTAAAACATGGTTTTTGGGCGTTAATGGTTTTGTAACAGTGGTATAGAGCAGTTTTACTCTT # Right flank : CTCCGGACATAAAAAAGCCGGGAATAAACCCGGCTTAACTTTTCGACTACCCCACGGGCATCAAATCAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATATAGTTTTTACGCATTTTACCGGAGATATGCGCGGTAACTACGTGACCGTTTTCCAGCTCTACGCGGAACATCGTGTTAGGTAACGTTTCGAGAACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCGGGGGTATCACTACCATAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGATTTACCGGTCATCTTTCCGCATACGCGGCGACCGAAATCTTGAGATCGTTTTTGCGCATTGCCCGAACGTCGCACAGATACCGTGTGACGAGCGCAAACCAAAGGGGAGATTCCTGAAACGTCGGCAGGGCAACAGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //