Array 1 11533-13145 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDC010000053.1 Bacteroides faecis strain 1001713B170221_170320_G3 NODE_159_length_13169_cov_26.5513, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11533 32 100.0 34 ................................ GTTCGTTTTTGTGCAAGAAATCTAATATGTTTAG 11599 32 100.0 33 ................................ CTTGCCCGATTTCCCGAAAGCACTGATTCAGGG 11664 32 100.0 34 ................................ GATTATATCCTGATCGACTGTCCTCCCTCGCTGT 11730 32 100.0 33 ................................ AATTTTCTCGATATTATCACCATGTAGGCCGAT 11795 32 100.0 33 ................................ TGGTCTTTTTCGATAGTATAGTTTCCGTTGTCT 11860 32 100.0 34 ................................ ATATATATTCTGGTCAAACAAACGCTTTCTCAAT 11926 32 100.0 35 ................................ TTGGAAAGAATCAGAAAAGAAACGGGCAAATCGGT 11993 32 100.0 36 ................................ ATAAAGCAGCAAACAAAACAGTAGCTTGGATCGACT 12061 32 100.0 34 ................................ TTATAATCATGAAAACAATTAACAAAATAAGAGT 12127 32 100.0 33 ................................ TTCAAAAAGTAAGCGCGAAGAACGTAAAAATTT 12192 32 100.0 33 ................................ ATCTTTTATCTTGCAAATTGCTTCAGCTTCTTT 12257 32 100.0 33 ................................ GATGAAGTTATCTCAAAAAGTGCGACAGAAACA 12322 32 100.0 33 ................................ AAGGAAGCTGAAGCAATTTGCAAGATAAAAGAT 12387 32 100.0 34 ................................ ACGATAACATCTGGTCCGTAACAAACGGACTATA 12453 32 100.0 34 ................................ TACTACGAGATGATCACAAGAAGAATGTCCGCAG 12519 32 100.0 35 ................................ CATACACTTTACAAAAACAACAAAAATCAATACTA 12586 32 100.0 34 ................................ AAACTACAGCACTTCATGTTTTTCGGAGGGATCC 12652 32 100.0 36 ................................ GACGAAGTAATCTCAAAATCTGCGACAGAAACACAA 12720 32 100.0 32 ................................ TGATTCTTGCGCGATTGCTAGTGCTTGTTTGT 12784 32 100.0 34 ................................ GGAGCTCAAAGAGCTGAAATGGAAGACGCAGGAT 12850 32 100.0 34 ................................ GAATGTCGTAAAAAAAAGAGAAGAGAATGGAGAA 12916 32 100.0 34 ................................ TTGAAAAGCAAGCGCGAAGAATGTAAATTATTAT 12982 32 100.0 34 ................................ TTCACATTGGTAGTGTATGTGTCCGTTATTGAGT 13048 32 100.0 34 ................................ GTATAATAGTTTTGTTAATTGCCATTTTGTTTGC 13114 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : ATAATTATCCAGTGTTCCTAATAAAATGATTTGTAATTATGTACATTCTTATAACTTATGATGTTGATACTACGAGCAAAGAAGGGGCACGTCGTTTGAGGTGTGTGGCTAAAGCCTGTATGGATTATGGACAAAGGGTACAGAATTCAGTCTTTGAGTGTAAGGTGACAGAAGCACAATATTGTCTCTTGAAAGAACGAATCAAAAGTCTTATTGATATGTCTCTTGATAGTATTAGATTTTATGTTCTCAGTAAAAATGAAAATAATAGAGTGGAAGTGGTAGGTGTTGAGACTGCTTATAAAATAAATGATACTCTTATTATATAATGTTTGCGAATATGTAGTGTTACAAAAAAAATAGTAATTTCGCAGGTGTTAAAAATCAGTAGATTAATTTATTTATAGAGCAGTTTTGGGTTGTGAAATCGAAAAAGTAGTAACGATTCGCATAATAATTGATTAAACTTGCTGGCTGATAATATGTTATCCAGCATAGGG # Right flank : CGTCAAGTGCTGGTTTGTGTAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 1618-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDC010000087.1 Bacteroides faecis strain 1001713B170221_170320_G3 NODE_273_length_1645_cov_40.1569, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1617 32 100.0 34 ................................ ATGGCTCATTACACTGGTATGAAGGAGATGCAGA 1551 32 100.0 33 ................................ TTTAAGGTTAATCCTAATACTCTCGATAATATC 1486 32 100.0 33 ................................ TTAACACGAATCTTGCTGATGACGCTTCTGAGG 1421 32 100.0 36 ................................ GATCAAACACTGGTGTGTCACAGAAAAAGGACATAC 1353 32 100.0 33 ................................ TTAATTGTCAACGTGAGAAGATATACTCGATTG 1288 32 100.0 33 ................................ ATGTCGATCACCCTGTTGCCGCCTTCCACGCAG 1223 32 100.0 32 ................................ TGTTGATTATTCAGGTATTGCTCAAGGTCTTG 1159 32 100.0 33 ................................ TTAACTGTCAACGTGAGAAGGTATACTCGATTG 1094 32 100.0 35 ................................ ATCTGTTGCCTCTAATAAAGGTCAGGCAAACGCTG 1027 32 100.0 33 ................................ TAGGAGGAACTATTGGAAATCTCATTAAGAGAC 962 32 100.0 34 ................................ ACAATCAGATGTATACTATATCTGAGGAAACCTA 896 32 100.0 33 ................................ CCGATTCAAACTCGCATGAAAGCTCGTATCATG 831 32 100.0 34 ................................ CTTACCTTAACGGAAACATCACGGGGAACATACT 765 32 100.0 36 ................................ TTTGGAAATCGTTCGACACTTCTGTAATCCAGATGG 697 32 100.0 33 ................................ ATCTGATTAATCTTATAGTTCATACTATTAGCA 632 32 100.0 33 ................................ ACGGTCGTATCAACATACTGTTTTCCCTCGATT 567 32 100.0 34 ................................ TTGTCTCAACCATGCCTCATATTCACGCAAAAAG 501 32 100.0 35 ................................ TTCACAGGAACAGTATCACCGGACAGATACGAATA 434 32 100.0 34 ................................ TTCGCTAAGGTCAAGCGTACATTTCACTTTTGGA 368 32 100.0 32 ................................ ATTTCCTTTTTTGTGTAGTATTACATCTCTTA 304 32 100.0 34 ................................ TTTTCCTCCAGCAACAACGCATTCAGCGCTTCCT 238 32 100.0 34 ................................ GAGATACTTTCCTGCCGTGTACACTGTTTCCAGC 172 32 100.0 34 ................................ GTGATTATCTCGTTGTCTTGACTTCCGTCGTTTT 106 32 100.0 32 ................................ TTACCGGATCAACCCCAGTAGTTATTACAACC 42 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 25 32 100.0 34 GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Left flank : TGGTAATTTGATGTCGCTCATTTTCAT # Right flank : CTCCTTCCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCTCATGTAGGTGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 44909-46257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDC010000300.1 Bacteroides faecis strain 1001713B170221_170320_G3 NODE_919_length_51708_cov_21.6091, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 44909 47 100.0 30 ............................................... TTGAGCTTAGATTGAAAGAAGCCGAAATAA 44986 47 100.0 30 ............................................... CGAACACTTTAAAGGAAAGGAGGAAATATG 45063 47 100.0 30 ............................................... GTCTTTCATTTTATCGCCCCCTATCATCTT 45140 47 100.0 30 ............................................... CTCTTGCTCTTCGACAGGCTGAAGCCTTAC 45217 47 100.0 29 ............................................... AAGAACAAATATAGCCGCATCAGCATTGT 45293 47 100.0 30 ............................................... TCCTGTTTTATTAAAAGCATCCCTATTCTC 45370 47 100.0 29 ............................................... GATACAACCGGGCGTAATCTCGATATCAT 45446 47 100.0 30 ............................................... CGGAGCAGACCTACCATTACCACGATATTA 45523 47 100.0 30 ............................................... TACTTGCCATTGAGTACGATGCTTCTTTTA 45600 47 100.0 29 ............................................... GGAGGTGATGGAATGCAACCATCCGGACC 45676 47 100.0 30 ............................................... TATTATGGCTATACGCTGAAGATAAAGGCA 45753 47 100.0 29 ............................................... ATATCAATATGGACAACAAGCGGCCGACA 45829 47 100.0 29 ............................................... ATGAATATATTTGTAAAAGATATGGATTT 45905 47 100.0 29 ............................................... ATGAATAAGAATAAGAGAGAGATGTTGGT 45981 47 100.0 30 ............................................... TTGCAGGAATTGAAAGAAAGGGGAATTGAC 46058 47 100.0 29 ............................................... AAGCAAATAAGGCGTATATAGGCGCATGC 46134 47 100.0 30 ............................................... TCCGACAGTTCCGAAAGGGTGTTAGGCTTT 46211 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 18 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : AAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCTGATTCCGTATTTCTCGCACGCTTTCGCTA # Right flank : CAGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAGGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //