Array 1 15340-15068 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JYRC01000057.1 Salmonella enterica strain CVM 43785 43785_contig_57, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
     15339	    29	  96.6	    32	..........................T..	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT	
     15278	    29	  93.1	    32	........A........G...........	CAGGTTATGCGCAAAAATTAATTCATATTATA	
     15217	    29	 100.0	    32	.............................	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA	
     15156	    29	  96.6	    32	.................G...........	CGTTCATCGGCAGCGTCACGCAATATGAAGAT	
     15095	    28	  86.2	     0	...............A..A.....G-...	|                               	
==========	======	======	======	=============================	================================	==================
         5	    29	  94.5	    32	GTGTTCCCCGCGCCAGCAGGGATAAACCG	                                	       

# Left flank :   GCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGC
# Right flank :  TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC

# Questionable array : NO	 Score: 5.29
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.51,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCAGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-9.80,-7.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [5-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.64,5.28   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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