Array 1 3900-2654 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPM01000028.1 Bifidobacterium longum subsp. longum strain MCC10002 contig0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3899 29 100.0 32 ............................. TGACGGCATCTACATTCCTTGGTGGGGCTGGC 3838 29 100.0 32 ............................. AAACATGGCACTGCCCATCCAAGTAAATCCCA 3777 29 100.0 32 ............................. CCGGCCGAAGACGCTGACAAAACGGCGCAAGC 3716 29 96.6 32 ............................C CATTGGGATTTCGACTGGCTCGATCGCATCAT 3655 29 96.6 32 ............................T GAGTGGGGCAGGTGGGTATAGAAACGGCCCGG 3594 29 100.0 32 ............................. GCGTCTTCGACTCAGGCAAGGTCACATACACG 3533 29 100.0 32 ............................. TGTCCCCAACGGACGGGAAACCGTTCCAGCGG 3472 29 100.0 32 ............................. CGACTCAGAAAATTGACCCGGCAACCATGCAC 3411 29 100.0 32 ............................. GATATGAAGGGTGTGGATGGCGTCGTGTTATG 3350 29 96.6 32 ..............T.............. GTCGGGACTCTTCTCCGTATATCGTTCATCAA 3289 29 100.0 29 ............................. GTACTCACAATGGCCGACGAAATGAAGGA 3231 29 100.0 32 ............................. TACCTTCCCAAAAATCGCGGAACACTGCCCAA 3170 29 100.0 32 ............................. GAGAGGATCAAGAGAAATCAGCTGGGGATATG 3109 29 100.0 32 ............................. AATAAATACAAGATTAAAACCGAGAAATTGGT 3048 29 100.0 32 ............................. AACACCCAGCAGGTCGAGGATGAAGATCGGAA 2987 29 100.0 32 ............................. AAATGCACTGACGGTACGTATCGGTTGCCAGG 2926 29 100.0 32 ............................. GTGCATACTCTGCCTACAACGCAGGTGTCATC 2865 29 100.0 32 ............................. TCCGTCGACGTAAGTCGCCATGATGCTGCCCT 2804 29 100.0 32 ............................. AGCGAAGCTGTGATGGCCATGGGCGAGGATGC 2743 29 100.0 32 ............................. TCTGGCTACTCGATCATATGAAGGCTTGTCCA 2682 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.4 32 ATCTACCCCGCACACGCGGGGATAAACCG # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTGCGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : TTGGAAGCGGGTGCTTAAAATATTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGCGCCACGAAAATCCCTGCCACCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCGGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCGCTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATCGACAACGGTGTCCGCATGGGATCGGTCCTGTCCGCCGTTTTCGAGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 7951-7618 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPM01000028.1 Bifidobacterium longum subsp. longum strain MCC10002 contig0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7950 28 89.3 33 .C..........GG.............. CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 7889 28 96.4 33 .C.......................... GAAAGCGCCATTCGAGGATCTCGATGTCCATAA 7828 28 100.0 33 ............................ GAACGAAAGTCCTGAACATCTCGCAGATTTTGC 7767 28 96.4 33 ........T................... GCGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 7706 28 100.0 33 ............................ TTGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 7645 28 92.9 0 .......T..T................. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : TGTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACC # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //