Array 1 344518-342987 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWG01000009.1 Variovorax sp. PDC80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 344517 28 100.0 32 ............................ GCATCCGCACGAAGGAGCTGAACAAGACCCAG 344457 28 100.0 32 ............................ CGAGCAAGGTGCCCGAGAGCTACACCACCTGG 344397 28 100.0 32 ............................ CGAGACGGGCATCGCTACGTGCGTCTGCTGCG 344337 28 100.0 32 ............................ ATCGAGCCGTTCGGACTGAACCGCACGCCATG 344277 28 100.0 32 ............................ TGATGCGTTCCTGGTGGCCCTGCTCAACAGCC 344217 28 100.0 32 ............................ CAGTGGGGCGTCTTCGCGCTGAGCGTGCTCTA 344157 28 100.0 32 ............................ TTCCCCCCATCCCCCCGAATCTGCCGAGCGAT 344097 28 100.0 32 ............................ TTGAATCGACGGTAGAGGCCCGAAACGATCTC 344037 28 100.0 32 ............................ ACCGAAATCGCAACGCTTCTTGTCACGGCAGA 343977 28 100.0 32 ............................ GAATGGAAACCACAAGAGACCGCAGGAAAGCA 343917 28 100.0 32 ............................ ATGGATAAACCCCTCTCCACCAATGCAGGCGA 343857 28 89.3 33 ........TT................G. TACGTCGCCGACACCACAGACACTTTCTCCTCC 343796 28 100.0 32 ............................ ACTCGCAGCCAGCCCGGAGACTTGCCGTAACG 343736 28 100.0 34 ............................ AGTACGCCGAGGCGCGCGCCGTGCGCGCCATGGT 343674 28 96.4 32 ..............G............. CTCAAGAGCACGAGCTCGGACGGGAAGGAGGC 343614 28 100.0 32 ............................ ATCATGAATATAGTGGCTGCCGGCCTGGCGGT 343554 28 96.4 32 .................T.......... TCGACGCGCCGAACCAAACGAGCGGCTGGGTG 343494 28 96.4 32 ....................T....... AGCTCGGCGACGTGGCGGCGGACCGATGTCGA 343434 28 100.0 32 ............................ TCGACCGGGATCGCCGCGGGCGCAAACTGCAC 343374 28 100.0 32 ............................ TACATGCCGCCGCCGGATGGCTGGTGCTGCTT 343314 28 100.0 32 ............................ ACCCGCTCTCGAGCGCGGCAGTGGAGAGGGCG 343254 28 100.0 32 ............................ TTCAACGACGGCACCGATGCGACGCTGCCGGT 343194 28 96.4 32 ...............A............ TCGCTGGTGGGCCAGGTCCATGCGCAGCGCGG 343134 28 96.4 32 .............G.............. CTCAAGAGCACGAGCCCTGGAGGTGAGGCGTG 343074 28 100.0 32 ............................ TCGTCGACTTGGCTGCCCGAGGTCACGGTGAT 343014 28 92.9 0 ..................C....G.... | ========== ====== ====== ====== ============================ ================================== ================== 26 28 98.6 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : GGCCTTAAGACGCTTGACCGAGATGGATTGGCTTCGGGGCATGCGGGATCATGTGCACGTCAGCGACATGATGCAGGCACCCGCCGATGCAGCGCATCGGCAGGTGTTACGGCGCCAGTTCAAGACCAACGTAGATCGCCTGCGTCGCCGCCGGATGCGCCGCAAGGGCGAGACTGCGGAACAAGCCGCCATGGCAATCCCTGACCATGTGGAGCGCCGGCCAGAACTGCCCTACGTCCAGGCGCGAAGCAGCAGCACCGGACAGCCCTTCTGCCTCTTTGTCGATCACGGGCCGTTGCAGGCAGAGGCAAGGCCGGGCGAATTCAATACCTATGGGTTGAGTCAAGGCGCGACCGTTCCATGGTTTTGACCCTTTTTTCCCAGGCCTGGCGTTGAGCCAATGAAATCAAGCACTTACGAAATCGCCCAGGATTTGGGCCTGAGGTTGTAGGTCGTAGATTTCTTCTTTTGGCACAACGGGTTACGGCTATCGGGGGTTT # Right flank : TCGAGCCGAAAGACTGAACCAGTTGAGCCCGCGACAGCCAAGGTTTTTCTGAGGATCATTTGCGAACACCAGCGCGAGCTGCGACCTCCCCACACCGAATCTTCAAGGTCATAGTACCCATTGTCAGCTTCCACAGCCTCAACCCTAGCTGTATTCCCCAAGCCTCCGCCCCGCCGCCAACGGCAACCCCCGCAACCTCCGCCCCGTAGCATCCGCAATCGCATTCCCCAACGCCGCAGGCGCCGGCCCCTGCGATGCTTCGCCGGTCCCCAGAAACGGCGCCCCGGGCCGATCGATGATGTGCACCTCCACCTGCCGCGGCACGTCCGAGAACCGCATGATCGGATAGCGGCTCCAGTCGTAGCTGCGGATGCGCTGGGCGTCGTACTGCACCTGCTCGTACAGGGTCCAGCTGGCCGACTGCAGGATGCCGCCCTCGACCTGGTTGCGCACGCCGTCGGGGTTGACGACCTGGCCGCAGTCGATGGCCGCGATGGCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //