Array 1 24688-28081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVUD01000052.1 Streptococcus oralis strain 1314_SORA 160_43844_2957213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 24688 36 100.0 30 .................................... AATTTCCTTGAAATCACCCTACAAGACACT 24754 36 100.0 29 .................................... TATCAATCCATGTCAAGAATGCTGAAACT 24819 36 100.0 30 .................................... TGATACTAAGCTCCCAGAAGCTCGTAAAGC 24885 36 100.0 30 .................................... GACTTTAGGTCTCCTTGTATACCTGCCATG 24951 36 100.0 30 .................................... ATAATCAAGATAAAGAGAAATGTTGATGAT 25017 36 100.0 30 .................................... CAAAGAAAGTAATATCAAAATAAATGAGCG 25083 36 100.0 30 .................................... TCCTTGGCTTCTTGCTCTGATTTCCACTTG 25149 36 100.0 30 .................................... TGGCTAGTTCGCTAGCCTTATTTAAGTAAG 25215 36 100.0 30 .................................... TGAAATCACAGTCAAGAAAACACCAAACTA 25281 36 100.0 29 .................................... TTAATCTGTACTATGTTTTGTCAATTCTT 25346 36 100.0 30 .................................... GTAGTAGCACAGGCTACAATCACAGCAACA 25412 36 100.0 30 .................................... CACTATCATGTATGTTGAAACGCTTGAGTT 25478 36 100.0 31 .................................... AATGCGACTGTAGTAGTCGGCCAACAACCTG 25545 36 100.0 30 .................................... CTGTTGGCTCTCTTGATGACTACATCACAG 25611 36 100.0 30 .................................... CTTTGGGTTGCAGGTTATGGCTTAAATGAT 25677 36 100.0 30 .................................... TATGTAAGGATCCAAGATTTCGATTTCCTT 25743 36 100.0 30 .................................... TCGGTCTTTAATTTCAGGAATGATAAAGCT 25809 36 100.0 30 .................................... GCGAACCCTTATCTTGTAGGTTTGACGGTT 25875 36 100.0 30 .................................... AACCTTTAAAGGGCAAAGAAAACTACTATA 25941 36 100.0 30 .................................... CAGGTTCAATACCAAATTCAGGTACTTCTT 26007 36 100.0 30 .................................... ACCAAAGACGTGGAGCTGCGATATACCCCG 26073 36 100.0 30 .................................... AGGATTTTAGATGAAGCAGTTTAAACAATT 26139 36 100.0 30 .................................... TATAACATATTACCGGGTAATACGCAACCC 26205 36 100.0 30 .................................... CTCTGGCAGCCGAAACTATATGGCTATCGG 26271 36 100.0 29 .................................... CACATGATCAACAGAGAAATGAACGCAGT 26336 36 100.0 30 .................................... AAAGAGCTTATGGAAGCGTTTAAAGGAGCT 26402 36 100.0 29 .................................... ATTGTTAAAGGTTGTACGACTTGGGATTG 26467 36 100.0 30 .................................... TGACTGTCTCAGTTCCTGATGTGAAGCCTG 26533 36 100.0 30 .................................... TTTTTCATTGAGGCTTTTAACTCCCGTCCA 26599 36 100.0 29 .................................... TGGTCGAAGCATCCACTGATTCTGCTTTG 26664 36 100.0 30 .................................... ACGCAAGATAAACGCTTGATAATTCTGAGT 26730 36 100.0 30 .................................... TACATCCCTGCCCTGGTAATACGAGACCTA 26796 36 100.0 30 .................................... AAAACAAAAGGGGTATAATCAAGGTACAAG 26862 36 100.0 30 .................................... GATGCCTTTTTTTCCAGAAATCAACGAAGC 26928 36 100.0 30 .................................... AATAGCGCTTATTTGTGCTATCTGTTGTAC 26994 36 100.0 30 .................................... TTCCAAGATGTGGCCATATAGCCATCCTTG 27060 36 100.0 29 .................................... TGAACTGAGACGTCTTGCTTACTTGAAGT 27125 36 100.0 29 .................................... CAAAGGCTTTGGTTGGCTTTTACAACCGC 27190 36 100.0 30 .................................... ATAAGCTACCACATTTCTCACAGCTGATTA 27256 36 100.0 30 .................................... CCTTTTATTTCTACGGCGTAGACGATCCAA 27322 36 100.0 30 .................................... CACTCAAACGTTGGGAAGTTGATCTTGGTA 27388 36 100.0 30 .................................... GTTTGGTATTCTGGGCAGGAGTTTGGATTG 27454 36 100.0 30 .................................... GTCTGCGTCGTGCATTGTCTCGGATACTTG 27520 36 100.0 30 .................................... ACATTCGTAGGATCTGCCTTCAAATCTTTT 27586 36 100.0 30 .................................... CCAACAAATTCAATCTCAAAGAACTTGACC 27652 36 100.0 30 .................................... TGTTTGTGATAGCTTCTGTAGCCATTTTAG 27718 36 100.0 30 .................................... TGCGGTCCTTGATAACTTCATAAGCTTCTT 27784 36 100.0 29 .................................... GAATTTGGATAAATGGGAAAGTAAATATG 27849 36 100.0 29 .................................... GTGAGTCCATGTACTTTCCCAGCTTATCC 27914 36 100.0 30 .................................... AAAACGAGGGATTTCTATAAATTCTCTCGA 27980 36 100.0 30 .................................... GGTTATGGCAGGAATACACTATATAAGATA 28046 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 52 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGACGATTTTCTATCCTATAATGATTTTGTTGAATGTTGTGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTTATGTATAATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACCTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTACAAAATGAAAACAAAATTCCGTATTGAATCAGCCAATCCAATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : CGGTCTGAATTAGATCTAACTCAGCAATCGGAACGGAAACGCCCTCTTTAGCTTCTTAAGAATAAGCTCACCAGTATGGTATAATGTCATATAGTAGCGATCAGAGAGGAAAGGAGCGGAAACGATGCTAGCTATTTGTATAGATTCTATAGGTGACAAGTCAGGGACCTATAAGTTGTTAAGAAACCATTCATCCTTGCCTTTTTCTTTAATCCAATCCAGAATCAAAGATCATGACACGGTGATAGAAGTAGACATGTTAGATTTGGATGAATTGAAAAAGGTTAGAGAACTCATCCGTGAGTTGAGTGCTATTGGGACCAAGGTTACGATGAGGGATTCGACTGGTATTATCACCTTAGAAATAGTAAATAATCTTATTTCTACTTTTGAAGAGATTGCGGCAGAGAGAGAAGAACTGGATGCTCTGATGTTTGAAGAGGAAGAGTGAGTGCCACGTTTTTCAGTGGATCACCAAGTTAGTTTTTAGTAATAGAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 52982-54114 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVUD01000039.1 Streptococcus oralis strain 1314_SORA 129_60483_4117107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 52982 28 100.0 33 ............................ TACCACTGCTCTTGCGATATTCTTTGCCAATCT 53043 28 96.4 33 ............T............... CGTGACTTTCCGTTTGGTGACTGATTATAGCCT 53104 28 96.4 33 A........................... CGGTGCAGTCAGCATCCTTGTCATTTTGGCAGG 53165 28 85.7 33 T...........G.A........A.... TAACACGATTGACATTCCCATATTGAGTCAAAT 53226 28 96.4 33 ....................A....... CACAATTCACTTGTACGAACGGGGTGGATATCC 53287 28 92.9 33 ............G.A............. CAAGACTCTTACCATCTTCAAGATGTCTGATAT 53348 28 92.9 33 A....................A...... CAAGACCAGGATAAGCAAATCAAGGCACTTGAA 53409 28 92.9 33 ............T.............T. TACGATTGAAGATAATAAGAAAGAAACAAGTAA 53470 28 89.3 33 ............T.T...A......... TGGGTCTAAGAAAATGACCTTTTGAATGGTTGT 53531 28 85.7 33 ............G...T...AT...... CATTTGCTTCTGACCGTTGAAATAGAAACCGTG 53592 28 92.9 33 ............G.A............. TGGGTATAGTAAAGAGGGCTTTTTAATGCCTTT 53653 28 92.9 33 ..............T..T.......... TGAGGGCTTGGTCATCGGTAAGAATGACGGTAG 53714 28 96.4 37 .....................A...... TATCCTGGATACAGGAATTGAACTGGCTTTCATGTTT 53779 28 92.9 33 A...........G............... TGTAGACACATCTACAAGCTGGACAATCCCTCT 53840 28 96.4 33 ............G............... TACAGATGCTTGTATTCGCTTTATGGAAGTTAT 53901 28 100.0 33 ............................ CTGATTATCTAGCCCCATCTCATAGATGGCCCA 53962 28 100.0 33 ............................ TCCACCAATTTTTCCTTTGTAGCCATCAAGCAA 54023 28 92.9 33 ............G........A...... TATCCACGTTTACTCTATCCTTAAACAAGTCAA 54084 28 92.9 0 .....................A....A. | G,T,C [54101,54107,54111] ========== ====== ====== ====== ============================ ===================================== ================== 19 28 94.0 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : TGCTGGTAGTGCTCAAACCAAGGATTATCAACAATTTTTAGATAACATCTATACTGGTAGCCGAATGAAATTTCGAGTGGTGCTTAATCCAGTTATTTCCTTAGTATCACCAGATAATCTTAAAAGAGGTATTGTAAAACCTCATATTACGAGTGAACATCAGATGAATTATCTAGTAGAACGCTCTGACAAAAATGGATTCTCACTGATAAAAGAAGATTTTTCAATCGTTGAACGTGGTTATGAGGTGTTTAAAAAAGCTGTTAAACCTATCCGATTGATAAAGGTTGTTTATGAAGGGGTCTTAACAGTTAGTGATGCAGATCTTTTTAAGAAGCTTTTGACTGAAGGAATGGGAAAGAAAAAAGCATACGGTTTTGGTTTAATGACCGTTATTCCATTGGGAAACGAATCATGGTAAAAAAAAGTGGAACGAAGAAAACATCTCTGCGAGAACTTCCTAAAATAAGTGATCGTGTCAGCTTTATTTACGTAGAACA # Right flank : CATAAAATGAGATATAAGAAAATCTCCCTATTGAAAACTGGTAAATTAGAGATAGGAGTGTTTTTTTATAGGAAAAAAGCATATTTTGTGTCAAAGAAGACATCTTACATAACAAAGGAGAAGACAAGTAAATCGAATGAAGTCATCATGGAGACATTTGGTAACAATAACATCAGTTGGGTAAAAAACTTGTAGCAGAGTATAAGAAAATTTGTCTTGCATCTGTTTTCTTAGAGATTTTCAGAACTAAATGCTCAACATTTTTTGATTGGAAAAACGAGACTAAAATCCTTAGCTCAGATTATCGTTTCTATCGGTCTAGCCCAAAACTTTGCGGCCCTCAAAGCCTTGGTGAGTACGGGCATCCAGCAAGGTCACATGAAGTTACAGGCCAAATCCTTAGCTCTCCTAGCAGGTGCTAGTGAGTCTGAAGTTGCTCCCCTCGTTGAGCACCTCATCGCAGATAAAACCTTTAACTTAGAGACAGCCCAGCGCTATCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //