Array 1 56-968 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOVJ01000120.1 Paenibacillus cisolokensis strain LC2-13A sequence120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 56 32 100.0 37 ................................ TCTTTTCGCCGCGCGCATCTCCCAGCGCGCGGCTCGC 125 32 100.0 35 ................................ CGACATGATCTTGACGACAAAAGCCCAATTACAAG 192 32 96.9 37 ............T................... TACAAAAAGCATATTCAATCACCTGGCCTCATTGTAA 261 32 100.0 37 ................................ GATCTCGTACACCCGGATGACCGCGTCCAGCTTGGTG 330 32 100.0 37 ................................ GGTGTTTGAACTCGGCCAGTTCCTCAATCCACAAAAG 399 32 100.0 35 ................................ CGGAGCATACACACCAGGTAAACATCCCGGCGCAT 466 32 100.0 35 ................................ GTGCCCCTCCAGAGCAACCAGAGCGCGACAAAAAT 533 32 100.0 37 ................................ TTTCTCCGCCAAAAGCCGCGGCAACACCGCATTCAAC 602 32 100.0 35 ................................ GAGCTCCTGTTTCGCAGCGTCAGCTTCCCGCCTCG 669 32 100.0 33 ................................ AAGACGGGCGCTATGGTCCGGGTGCAGGACAAG 734 32 100.0 35 ................................ TTTGGTCGCCGTGTCTAGCAGAAATGCGAGATCGG 801 32 100.0 35 ................................ GGATCGTTTGCGTCTTGCCGTCCCAGGCTATCCTC 868 32 96.9 37 ............A................... CTTCCCATTGTTCGTCCTAAACATCCTCCAGGAGTCG 937 32 87.5 0 ...C........A.A...........A..... | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.7 36 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Left flank : CGGGAGCGTGGATTGAAACACGTAGTCAACCCGATGTGGACAAAGAAATACGGGTG # Right flank : CGCACGAGCCCGGCACCTATGAAACCTGTGAATCAAGAGCGGAAAATATTTCATGCAACCCTATTGACACTGATAATTATTATCAATAAAATGAGGATAAATCCATTAAATGAGATTGATTATCATTGTTATTGGGAGGTTGTTAAATGTTTCGCAAAGTTTTGGCACATGGTTTATTGGCGTTGGCGGTGCTAGCAGCACCACTGGCAATAGGCAGGAAGAAGCGTCGGCTGCAGCGGCTTCCAATACTGCTATTAAGGTAAAGCTGGACGGGAAGTCAGTATCACTGGATACACAGCCTCGTATTGTGAAAAATCGGACGCTGGTTCCTTACAACAATATTGTGCATGCATTGGGGGGCAAGGCTTCCTGGAATGCCAAGAGTAAGACAGTGACTGCTGAGCGGGATGGATTAACCGTTAAGCTGTCAGTCGGCTCTTCTGCCGCTTACATAAATGGCGAGAAACTGGATATGGGAGTAGCCCCGCTCTTCGTGAACG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8822-8984 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOVJ01000154.1 Paenibacillus cisolokensis strain LC2-13A sequence154, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 8822 32 100.0 33 ................................ CCACGTCTTACCTAGTGCCTGCCGCGCTTTTCG 8887 32 100.0 34 ................................ CAGCGGTCAGCTGTATATTTTGCCGTTGTGCCGA 8953 32 96.9 0 .......................C........ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 99.0 34 GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Left flank : TGGAAGTAGGTGAAGGCTTGCTGGTATTGATTACTTACGATGTAAGTACGACAAGCGCGGAAGGCAGAAGAAGGCTGACTCGAGTAGCGAAGAAATGTCTCAATTATGGCCAACGGGTTCAAAATTCTGTGTTTGAATGCATTCTTGATCCAACGCAATTCCGGCGGTTAAAATATGAACTCGAAGCATTGATTGATAAAGAAAAGGATAGTTTGCGCTTTTATAATTTGGGGGAGAATTACAAGGCCAAGGTGGAGCATATTGGCGCCAAAAGTTCATACGACATGGAAAGTCCATTAATTCTATAGTCAGAAAACAAGGTGCGAATGTGAAGCTCCCATAAAATCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAATCATAGAAAATCTAATGATTTGGAAAAAGTCAATAGATTATTCATATGAAATAAGCATTAATTCTTGAGGAATTGCATTAAATTGATGCTTCATATGGATGGATTTAGTCATTTTTGCT # Right flank : CTTTACCTGGTTGTCGATGTCCATTTTCTTCTTGCTAGCTCGCCATGGAAACTGCAGAATATGCATAAGCAGAGCGTCCTACAATTGAACTTAACTTCGTATCATGCAAACTGTGGAAAGTCCATTCCATGAACAGCCAAAACCCGAGAGAGGTCACTTTGAAAGGGGCTCTCACTCGGGTTTTTGGCAGCATTTATCCATACTATTAACGGAGGTCCAAATCCTTACGATTTGGTTTCCGCAAATTCGGGATAAAATCTACGATATAAATATCTGACTGTCGTAAATCATAATACTGTCCCTGAACTACGACCAATGGATTGATAAGGTCGTCAGGATGAAGCATTGTTATCCGCGCAATTTGACCATTTGACAAGAGAACCGAATTCCCAATCATTCTGTTCATTACGTTGGAAATAAAAGATTGAACAACCAATGGATCAAATAACCCAGATGCACGTTGGTAAATTTCCCGATACACTTGATACAATGGAGCAGGT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 688-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOVJ01000239.1 Paenibacillus cisolokensis strain LC2-13A sequence239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 687 32 100.0 34 ................................ TATTTACGAACCTGATAATTTTTTGAGCGGTACG 621 32 100.0 38 ................................ CCCGCATTTTTCGGGTACTTGTCCACCTCGTCCATGAT 551 32 96.9 35 .........T...................... CGCGATCCAGCGTTCGTACTCGTCGGCGCGCTCTT 484 32 100.0 33 ................................ CACGGCGGCGGAACCGCAGCGAACACAGCCAGC 419 32 100.0 33 ................................ GCGTTTAATCCGGAGCGCGTATTCGATAGCGGC 354 32 93.8 35 .........T...T.................. TCGGTACCGGCCATTGCCGATGCGTTCCCGGATAT 287 32 93.8 38 .........T.....................A TTAGGCACCAAAACGTACCGATTGTCACAATTACGGAT 217 32 96.9 35 .........T...................... TTCGTATCCAAGTTTCATCGCACTTGGTCGATTAA 150 32 93.8 36 .........T...T.................. GGCGTTTGCTTGTCGGAGGATCGGCTCTCTTTCGAC 82 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 97.5 35 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : CAATTATCGTGTGTATGACTCTGCGGATGAAAAATCGAGGACGGAAATATCCGTGTTGTCTCTTACGTTCCTGTTGAATCAATTGCTTATGCTGCTTAATAATCCGATTCCGTTCCCTCACTTGGCGTATGCGAAAATGTTCAATGAAATATCTTCATCGATTTCCCGGAGAGGTTCGCGCTCCTCTTGATGCATTCGGGACTCGAAGGCGTCATCGATACGAGCAACTCATTCATTTTACTTTTCTGCGAAGATCGGGTATGTTGTAATATGGATGTATCGAACGCTACCTTCTTGTGAAAAACCATTGTTTCCGGTTGGTGCGAATGTGAAGCTCCCATAAAATTCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAACGAAGGATTTTGAGACGATTCATTAAAAGTCAAGCGTAAATCTATACGGAATTGGCATTAATTGCTACGAAATTAAGTGTTATTGATGCCATACTGAGATCGATCGACCTGTTTTTGCT # Right flank : CCGGTACATGCTCCTTGCAAACCTTAATAGTCCAGTCGCTCCCTACGCGGG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : GTCGCTCCCTACGTGGGAGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9229-8992 **** Predicted by CRISPRDetect 2.4 *** >NZ_BOVJ01000239.1 Paenibacillus cisolokensis strain LC2-13A sequence239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9228 32 100.0 36 ................................ CCTACAACGTGATTTTGTAAGTAAAACTGCAAAAGG 9160 32 100.0 36 ................................ AACACTGGTGCAGGAAATGAAACAGCGGCAACATTA 9092 32 100.0 37 ................................ TTGTCTTCGGCAAATTTACCTTTTGCATGGATTGCAA 9023 32 84.4 0 .........CGT............C..C.... | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.1 37 GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Left flank : CGGGAGCGTGGATTGAAACATCAATGCCCATAGCGACTGTACTTCCGGCCACAGTA # Right flank : GCATCGCTCCAATGCTTGAACCCCTTGTTTTCGACTTCAATCCCATACTTGTGCGTGGTTGTACACACGAATAGACGTATGGCTCGCTCATCGCCCTCCAAAGCAAAGGATATTCCACTTCCGTGTCGCCTGCCCTTCACTTTTTCTCCGAAATTGTTCCAGGTACAATTCACGTCTTTGCATACTTTCTCACACTCATAATCAAATAGTCCCATTTTATAGTCGCAAATACCTAAAATAATGATGAAAATAATTCCATTTAAGTGTAAAATGAGATATATTAAGACGTCCTGTCAGTCATTGAACTGCTATTTTATCGAGTAAAAGGTTGAGGTGATGGCATGACTAGGTCGAATGGAGTAGTTCCGCCTTGTCTCGATACTATCAACAAACGGCTTAGCGATACCAGCAACATTGCGAGCGAAGTCTTCGAAATTCAAACCGTCACCCCGATGATTGGAGGAAGCAGTACGCCCGGTAAAGTCAATGAGAAGGAGCCG # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //