Array 1 11097-8243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABOT010000014.1 Synechocystis sp. PCC 6803 NODE_14_length_95978_cov_55.7286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 11096 36 100.0 36 .................................... CTTTAGGTGGGCGTTGACCTTTAGATTAGGAATGGT 11024 36 100.0 36 .................................... AGCGCCACAGCTGACAGAGTTCCTGAAGGAAGCTAA 10952 36 100.0 35 .................................... CTGAGTGATTTTTATCAATTGTCGAGCTTAGTAGT 10881 36 100.0 36 .................................... ACAGGAGTGTTAGCGCACTGCCTGTCATTACTATTA 10809 36 100.0 39 .................................... TTAGATTGCGGGGGCTAGTGACGCCATAGTTTAACGACA 10734 36 100.0 36 .................................... AAAGATATTAGGCTATCCTTCGGGGTAGTCTTTCTT 10662 36 100.0 35 .................................... AAGTGTTGTTGCCTAGTGTTATACCAGAATATCCC 10591 36 100.0 37 .................................... CTCATTAGTGCTATCTTCTTGTTGATGGATTAGAACA 10518 36 100.0 37 .................................... TCTACTCTGGTGAAGACCAAGTGGATTTCGTGGTGAT 10445 36 100.0 36 .................................... GTTAGTGCTTGGTTGTGGTTATGCTGCAACTAAGCC 10373 36 100.0 37 .................................... ATCGATATACTTTTTAGCATCAGCTAAATGATAAAAA 10300 36 100.0 35 .................................... TTAGAAAGTTTTGGTTAGTTTCCATTCCTCTTTTT 10229 36 100.0 36 .................................... TTTCTCCATTGTTAGTTAGTCATTTCCTTGACAATT 10157 36 100.0 36 .................................... TGGGATTCATGAACATGTTGATGGTGAATTATACCT 10085 36 100.0 41 .................................... TGATTAAATTAATATGCGTGATAGATTAACTCATTTTGGTT 10008 36 100.0 35 .................................... TTTTTTGGCATAACTCAGTAAGTCTTTTTTGTTTA 9937 36 100.0 39 .................................... AATACTAATCTTAAAGATCTTGGTTTAATTACATATCGT 9862 36 100.0 37 .................................... AACAATTGCAAGGTTTATAAGTAAATGAACAACAACG 9789 36 100.0 38 .................................... AAATCCAACAACTTCTCCACATTTACTCCACTAGTCTC 9715 36 100.0 40 .................................... CTCCTACTTGTGCAGCCTCTAGTCCGCTTTTTAGATTGCG 9639 36 100.0 39 .................................... GCTTCGCTTCTTTCGCTTTCTCAACATAAAACTCATGAT 9564 36 100.0 35 .................................... CTAAAGTATGGTAACTCTGGGTAATTTTTTAACAG 9493 36 100.0 37 .................................... CTTATCTTTTTCTAGCGTAACAAAAGAATAATCAGGA 9420 36 100.0 40 .................................... TTTCAACCAAAAGCTTATTGGCTTCTACGGACTCACGAGC 9344 36 100.0 39 .................................... TCTGAACTACTTTTTTTTCAACGACTTCACCATGGGAAG 9269 36 100.0 39 .................................... AGTTTTAGATGCACCAATTACATCTTCTTCCATAAAGGA 9194 36 100.0 46 .................................... ATTCAAGACCTCCGGTGGTCAGAAGACTGTAGCAACAAAGCTTGAG 9112 36 100.0 39 .................................... TAGATCAGGCATCCAAACTCTTGGGCGATGTCGCGTAAC 9037 36 100.0 36 .................................... CGATGTAGCTCATAGCGACCTCGATAATTAATTGAT 8965 36 100.0 39 .................................... ACCAAGCTAGTCACTATCCGATCAACCGTCGTTGCAGGT 8890 36 100.0 42 .................................... TATCAAGAGTTGTCTAGTCAGTTCCAAGAAAAACCCTGGGAG 8812 36 100.0 41 .................................... TGACCTGATTCCTCGAGAATTGAGACTCCTAAAGAAATTGC 8735 36 100.0 35 .................................... AGTTCCAGTCGTGCTCCAAGGGCTCTTCGTCTTCA 8664 36 100.0 47 .................................... AACTTTGGAAAATTGCCTTCATACCATTCTTTTGTTAAACCGTTGTT 8581 36 97.2 37 ...........C........................ AGCAACAAAACAGCCAGCAGCAATTAATAAATCAGTT 8508 36 100.0 39 .................................... ACTCCGTGGCGTCGTACCGGTACGCCTGGGCTTCGTCCA 8433 36 100.0 43 .................................... TGAAATAACCCCCATAGCGGTGGCCATGGGGGCGTTTTACTAA 8354 36 100.0 40 .................................... ATATCTGTTAGCTCAATTTGAGCAAGTTCATCATTTTTTA 8278 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================================== ================== 39 36 99.9 38 GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Left flank : TTAATTCGCTAATTGATGTTTCTCTATGTTATTGCCTACGATATTCCTGATGATCGCCGTCGTAAAAAGATGGCCGATTTATTAGAAGGTTATGGCCAAAGGGTGCAATATTCTGTATTTGAATGTACATTGTCTAAGTCTAAGTTTAATGAATTGCAAAAACGTCTCCGCAAAATTTATCAATCAGAGGAAGATAGTTTGCGTTTTTATCCTTTGTCTGGGCATACCCTCACCCAGGTTGATATTTGGGGGGAACCACCACTCACTAAGCCCCCTGGCTCAGTCATTGTCTAAAATCTATGCTGATTATTGGTGTACCATTGCGAGGCTGATGGAAAATCGCTGTAATGTCCGTTTTTCGTTGGGAGCCTCGATGGCTTACTGTATAAGGATTTCAGCCGCTATTTTTGCGTTGAGCTTTTCCGATTATGGTCAATTTTTGCTGAGCCTCGCAAATGAGGATTGGATGCCTTGTCCCGTAAGGCTTTAAAATGGGGGCA # Right flank : TAGCTACGATAACAATTAGTATTACAAAAATATGAATTGAATTAATAATTTAGCCTACGGGAAAATAGGTTTTCTACTGCCATGCTAAAAAATAGATGTTGAGTTAAGTCATCCACCATGCAACTAAAACACTGGCAATCTCAAAAACAGGAGCAAAAAAAGAGTCCAGGGGCTCCCAAAAAAGTGCGGCGACAAAAAGCCCGCCTGCAAGCCCTACGAAAAAAGCTCCATTCTTCCTGGGCTGGAAACCAGCCATAATAATTCGTTCACCAGAACTCGCAATTTTTCACGGAGAAGCCGACAAACATGAATAGTATTTTCACCATTAACCCCTATTGGACCGGAAGCACCTGGGCGTTTGATGCGGCCGAAGTGGGTCTATTAGGGGAACCCTTTGTTTCCGGAGCTGACGCCATTTTGAGCGCCATTGTCAAGCGGGAACTGGCATTGGAGACAGAACAAGGCAGTCAATTCGAGCTAATCTTCAGTGCCGAAGGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTCTCCACTCGTAGGAGAAATTAATTGATTGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 32551-28423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABOT010000014.1 Synechocystis sp. PCC 6803 NODE_14_length_95978_cov_55.7286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 32550 37 100.0 36 ..................................... TGTAGTAGAACCAATCGGGGTCGTCAATAACTCCCG 32477 37 100.0 40 ..................................... CGGGGCTTGGGGGGTTGGAGTCCCCGCCCCCGTGGTGGGA 32400 37 100.0 42 ..................................... TGTGAGTTGCATAATGCCTCCTAATGGCTGTTGGACTCATAA 32321 37 100.0 36 ..................................... CTTGGTATTTGTAGTTCTCGATGAGTGTTTTAGGCA 32248 37 100.0 36 ..................................... TGATAACGGGATGCCAGCCCTAAAGGTGATGAGCGG 32175 37 100.0 39 ..................................... CGTTATCCGGCAAAGAAACCACACTACTAAGCTCGACAA 32099 37 100.0 39 ..................................... TGGGCCGGGCGCGAGTTGTCCTCCTGTCCGAGGCCCCAC 32023 37 100.0 35 ..................................... CTATTAAGGCTATTTTCGCCACTTCTGTTTGAAAG 31951 37 100.0 44 ..................................... GTCACACCTCTTCACGAATCCTCACATCATGAATAAGCTGCACA 31870 37 100.0 39 ..................................... CGCGGGTCGAGATGTCGCTGGACACGCTGGTGCCGGACA 31794 37 100.0 38 ..................................... CTGGGCGGACTGGAGTTGCCACCTGCCGATGGCCTGCA 31719 37 100.0 41 ..................................... GAGCCAAAGTCAACTAGCACAGGCACGGCAAGCCATCCTGA 31641 37 100.0 38 ..................................... TCGTGCATCTGCGCATAGGAAGAGGTTAATTCCTCAAC 31566 37 100.0 38 ..................................... AACGGGCAGCCCGAGTGGTGGGCATCGAGGTGGTGCTC 31491 37 100.0 40 ..................................... CCCCGCCACATTTTCGGATTAGAGGATTTGAATCGGCCGT 31414 37 100.0 42 ..................................... AGTTTCTCAAACTTTTCGGCGATCGCCGTCCAGGTGAGTTGA 31335 37 100.0 43 ..................................... TAGCGAAAAGTTATAGTTACCTTTGACCGGAGCTACCAACTCA 31255 37 100.0 35 ..................................... CCCCGCTGCCACGAGGGCAGCTGTAGACGCACCCC 31183 37 100.0 40 ..................................... TTAAATATACCCATCCCTAATAAAGGATAGAGATCTTGCA 31106 37 100.0 37 ..................................... GCTCTATTCTAATAACCCAAGCTTTTTTCAATTCTAA 31032 37 100.0 41 ..................................... CCGCTTGGTAGGATTGACCACCAAAGCTAGAAACAGGCACA 30954 37 100.0 35 ..................................... AGGGCGGTTAATCACTAGCGGCGATCTAGATATTG 30882 37 100.0 45 ..................................... TAGACTTCTATTTCCCCTCTTGCCGAGGGATGATACTGCAATTGA 30800 37 100.0 38 ..................................... TGCGCTCTCTTATCAAACGCCGCAACGCCATCAAGGCT 30725 37 100.0 39 ..................................... ACGAGCGGAATCTTCTATGGATCGGATCACATCCTTAAT 30649 37 100.0 37 ..................................... CTGGTGTCGGGGTTGTAGTATTCGTCTCGGTACAACA 30575 37 100.0 40 ..................................... ACTATAGGGAGCGTTACCCTAGCTAGACATTGCCTAATCT 30498 37 100.0 40 ..................................... AAGAAGCAGAATAATGCGATTGAGTGGACAAAAATAAGAA 30421 37 100.0 34 ..................................... GGTTACGTATCGGCGTAACCGCCACTCCTTAGAG 30350 37 100.0 39 ..................................... CGCCTCCTGCGCCCTGGAGGGGTGATCCTACACCTCGCG 30274 37 100.0 36 ..................................... GATTCTGGTATACGTTTATCCCACCACTCCTTAGCT 30201 37 100.0 35 ..................................... CTCGTAAGCTAGGCAACGGCCTTGCTCGATGCACA 30129 37 100.0 36 ..................................... GGTGCAGCTGCGCCTAAGGAGATGGCTGTACAAGCT 30056 37 100.0 39 ..................................... CACCTAGAGGGTACCTCCCGGTTAGACCGGGGCTCTTAT 29980 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 29907 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 29830 37 100.0 36 ..................................... AACATGGCCACAACAACCTTCCCGGAGCAAGGGATG 29757 37 100.0 40 ..................................... GGCGATATTTGGCGTGCCAGCCAAGTGAATTTTGGCGCTG 29680 37 100.0 40 ..................................... CTAGCCTTTGTGGCTAACCCTCCTGCGCTTTGACATATAG 29603 37 100.0 35 ..................................... TTTTACCTCTTGCTCCTGCACAAGCTCAGCCTTAA 29531 37 100.0 36 ..................................... TCCTCCTCGCCTCTGAGAAAGAGTATGAAACACTGT 29458 37 100.0 37 ..................................... ATGAACAGATTGCCATCTTCTAGGCGGATAGCCTGGG 29384 37 100.0 40 ..................................... CGCCCATTGTTTGTGCTTCCGGAAGAAGTCTTTCAACTTC 29307 37 100.0 43 ..................................... GTTATCACGAGTTATCTTGCGCAAATCTTGTAGTGCATCTTTT 29227 37 100.0 37 ..................................... TTTAGCGGAGGAGACCTCTTCTATTTCTCCTATAACC 29153 37 100.0 41 ..................................... GGGAGAACCCTAAAAAGTTCTCCTGTCTAATCGCCACCTGT 29075 37 100.0 35 ..................................... CGCTCCAGAGTGCGCCGCCGCCGAATTGCGGTCCA 29003 37 100.0 45 ..................................... GAGACTCTATCTTTGGAGTTTCTAAGACATTGGCGGTTTCTAGGG 28921 37 100.0 41 ..................................... ATTGCTTGGCGTAGGTTGACTTACCCGAGCCTGGGAGACCA 28843 37 100.0 40 ..................................... TCCAAGGGCTCTTCGTCTTCAAAGGCCTTAGTTACCTCTG 28766 37 100.0 45 ..................................... ATAATAAAGCACCCTCAACGGACTATGCCATGAACAACAGGACCC 28684 37 100.0 34 ..................................... GTTGCCAGTTTTGCCGTTTTTGCTGTTCTGAGAT 28613 37 100.0 46 ..................................... CCCATAATAATTAGGCTCGCTACCATAAGGGGAAACTTCTTCCAAG 28530 37 100.0 34 ..................................... GCGCCTGAGGTGGTCAATAGTGACCCCATGGCTC 28459 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ============================================== ================== 55 37 100.0 39 GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Left flank : CCCAGTGGGGGAACGGTGCTGACACACCCAACCCGCGACTGGGTTTATTTATGTTAGTTTACCCTTTCTATGGGTTCAAAATGTGTCTATCCCGACAAAATTAGGGCTATTACAACAACTCGTTGACACTGGCCATAAGTCTCAAACCCTTGTCGTGTCAGCGTTTGCTCGAAGTAAAAAATAAAACTCGTGGACACTACCATAGACAATATTTGCTTCTGTAATTGCTTCCCAAATCAGATCAAGTTTTGTTAAGCACTTGACGATTTTCAGCGGACGTTGTAGCAGTGAGCCTGACTTTGTCTGACGGAGCTTATGTAAAGTTTTATGGATTAATGCTTGCTTTCAGCAAATTTAGGTATTACTATGACCTTTATAGCCAAAAATAAGGCTTTTTATTGTTATGTTTTCAGTACGTAACAAATCGTTAAACGTCTACCTCTTGTTTGGCGGATTGGCACCTCGAAAACCGCATACAGACTGTTTTTCAGTGTGATAGG # Right flank : GATCAGCAAAAGTATCTCAATTGCTGACAGTGTCATAAACCTGAACAAGAGTCATTCCACGTCCAGAAATATTAAGCATTTCGTTGTTCAATTTTTTTACTACTTGCCGTAAGCCCAACCATTGATAATATCAATCAACTCATTGGACCAAGGGTTAGGATTGCGGTCTTGATAAATTTGCCAAAGAGACTGATAGTACCAAATAATGCCAGATTTGCTCCGACTGAACTTTTGCCAAATATCATTCCCATAGCGGTGTAGGTCGATCTCAATAGTGCGGGCATTATGGAGAGTATCCGCCAAAGAAATTTTCAGCACAGCGAGGGAAATGCGAGACATTTTTTGTAAATGCTGTTGTTTTCTCTCTTCCCAGGGCGGTTTCGGCACTGTGGAGCTATCGGAACACCCCAACACTAATTGAGCTACGGTTTCCCCAAACTTTTCCCGAATTACATTGAGAGTGGCTTCTCCCCCTTGGTCCTCCACCGCATCATGGAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCAACACCCTCTTTTCCCCGTCAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 3 84815-81375 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAABOT010000014.1 Synechocystis sp. PCC 6803 NODE_14_length_95978_cov_55.7286, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 84814 37 100.0 35 ..................................... GATTGTTGTGCCCCTGGCGGTCGCTTTCAATGCCT 84742 37 100.0 37 ..................................... TAATCCTAATTAGGTTTGAGTTAGTATCTAGTGCCAT 84668 37 100.0 33 ..................................... ACAGATTTTGCTTCAGCTAGTACCAAAGGCTAG 84598 37 100.0 37 ..................................... TCGTAACTACCTTCTAAGTCTGTAGCGATGAATGTGG 84524 37 100.0 37 ..................................... CAAAATATAGGGAAGAATTTTAGAAAGAACCTCAGAA 84450 37 100.0 39 ..................................... AACTAAGGCATCCCATAGCATTCCGCTACGATCTATCAG 84374 37 100.0 35 ..................................... TAATAATTGCTGATTAATCGTGGTGGTGGTGGTGG 84302 37 100.0 36 ..................................... GATATATGGCTAAATATTGCTCAAAAGATTTTAATA 84229 37 100.0 35 ..................................... ATTAGATTGGTCGTGTTTTGATTAACGGTGCTAGC 84157 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 84085 37 100.0 35 ..................................... TTGCCATCCCAGGCAACATAGCAAGCATGGAGGTG 84013 37 100.0 36 ..................................... TTGCGGACAGACTCGATTAAGTCAATAACAGCTTGG 83940 37 100.0 36 ..................................... CTTGCCCTAATTTTCCTGGTGGAAAAGCCGCTGGCT 83867 37 100.0 35 ..................................... ATAGCAAGTTGCTAGAGAAAGCGCAACAAAACAAG 83795 37 100.0 34 ..................................... GAGGTTAAATTGTTGTCGATTCAAGAAGACTTGA 83724 37 100.0 36 ..................................... AATAGACACGAATTCCGGTTCCAGACCCAGCCCGTT 83651 37 100.0 35 ..................................... TTCTTCCATCAGTCCAAGTTCTTCAACAATGTCTA 83579 37 100.0 35 ..................................... TGCTGAAGAAGCTGGAGAGAATCGGGCATCGCTAT 83507 37 100.0 35 ..................................... ATTCCAGATGTGGTGGAAGAAACCTACGCCCCCGA 83435 37 100.0 32 ..................................... AATCAGCTTCCGGCGTTGCCATTTGGATTCAA 83366 37 100.0 34 ..................................... GTGAGGGGGCCAGATCCCTGCCAGATCCCCCAAT 83295 37 100.0 35 ..................................... ATTAGATCTTTGGCATAAGGCAACCGAAACTGATC 83223 37 100.0 35 ..................................... GATTATCGTGCTTCCTTCGATGCTAACTTTGCTCT 83151 37 100.0 35 ..................................... TCCATAATGATTCTGCCTCGTTTCTACTTGGTTTA 83079 37 100.0 37 ..................................... TGTATGTCACGCCATCGGACAGGTAGGGAAAGCCTGG 83005 37 100.0 38 ..................................... CAACTGGCTAAGCTGGTCATAAGGCTTTGGGAATGAAA 82930 37 100.0 34 ..................................... TCGGGTTTCCCTCCTGGGTAATGACGCCTACGGG 82859 37 100.0 34 ..................................... CAAAGCTGGCACGGAAGCCCTTAAGGATATCCTC 82788 37 100.0 37 ..................................... GATGCAGAGATTCCACCACCAAAGGAGAATCCGATAA 82714 37 100.0 37 ..................................... AAAGATTGGGACTTTTAACTGCAAAATACCAGGCTAG 82640 37 100.0 41 ..................................... ATTTGTTGGGCCATCCTGCCCTGTCCATTGAGGTTAAGCGG 82562 37 100.0 35 ..................................... AAGTAAGGTTCAAACGCCGCTACGCAGTCTGGTCC 82490 37 100.0 33 ..................................... CAAAGTTGGAACGAAAGCTAACGACAAAAACTA 82420 37 100.0 38 ..................................... TTTAGCCATCGTCGGATTCTAATCGATCCAAAAGTCGG 82345 37 100.0 37 ..................................... AATCCTACCAAGCGGCTTTTGGTGGGCCTGGCTCCGA 82271 37 100.0 36 ..................................... TTCGGTTGATTGATGAAGATCTGATCGTCGAGTGGT 82198 37 100.0 34 ..................................... TCCCTTTTCGGGGATAGGTGGTGTCCCTTTTCGG 82127 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 82055 37 100.0 35 ..................................... ACTACCAGGGGGAAATTGATGGTATTCCCGGCAAA 81983 37 100.0 36 ..................................... GGGCAATGTTAAGCATGGCTAGAAGGAATAGTTAAC 81910 37 100.0 33 ..................................... TTCCATTAATGATTCTTCAAAAATCACTCGATT 81840 37 100.0 36 ..................................... ACTGTTACTAGCCACCGCCCAACTCCTTTAATACTT 81767 37 100.0 37 ..................................... TCTTCTGTTACGTAGATTTTTCCTGTTTCGCCAACAG 81693 37 100.0 37 ..................................... CATCGCTCCCAGCATATTGTCCTGAACGGTCGGCAAT 81619 37 100.0 34 ..................................... GATTTTTCCAGTGATGGTGCATACCTAGCCGTAG 81548 37 100.0 32 ..................................... TAGTCCCTCCCACACTGCCAATATTTCTTCAT 81479 37 100.0 31 ..................................... TCCGTCTGTATGACTTATACTCGCAAGGATT 81411 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 48 37 100.0 35 CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Left flank : AAAATGCTTTATTTGATTATTTATGATGTCCCGGCTACAAAGGCGGGTAATAAACGACGAACTCGTTTGTTTGATCTCTTATCGGGCTATGGCAAATGGCGACAGTTCAGTGTGTTTGAGTGTTTTTTGTCAGTCAAGCAGTTTGCTAAGTTACAAACGGCGATGGAGAAGTTGATTAAACTTGATGAGGATGCAGTTTGTATTTATGTGTTGGATGAAAATACGGTGCAACGCACGATTACCTACGGGACTCCCCAACCAGAAAAACCTGGTAGTATTATTATCTAAGAAGTCATTCTTCAAATTTTGGCATACCTATAGCGAGGGCCTTTTCCCTGGGGGGGTTGCCAAATTGCTTCTGAACCTTGAAAAATCAATACTTTCACGCATTCAGACTGCGTACTATTTTGAAGGTCTGGCTGATTTTGGAAAGATATTCTGGAAGGTTTGCCAAAGTCTGCTTTCCTCCACTTTCCCCGTAAGGGGTCGGAGGGGGCGGT # Right flank : ACGCCGCCAGCCCACCAGCGCCAGTTAACATCATCTCCAAGTCTAAACTGAACCCCACCAGTAGCGCTAAAAACAGCTATTTGAGAATCAGCCATGATTGTTTTCCCCGGTTGCAGTTTTTAGTTTAGAGCTTTCTCCCCTGTCCACTTTTTCGGGGCCACCTTACAGCCCTGGTAATAGGATTTGCTTCTCACTGCCATCACTATTGATGGGACACTCCACTCACGTAGTTACAGAAACCTCCCTTGTTAGGAGACCACTGCCATATATTTTGCTTTTTATCAAACGAAATTACTGCTTATATTTTTTGACTCTAAAACAGCAGTCACTGGCACAATTAGATTAGGTTTATTGTTATATTCCTATGCCTAAACTTAAAAAGCTTACTCCCAAGGCCGAAGCCCAATCTGAGTCCACCAGTCTAGACCGTCTAAGGGAACTGGCCCAAGACCCCAAACTGGCCAAGCTAGTAGCGGCTAATTATATGGCCCCACCGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTCCTTCTACTAATCCCGGCGATCGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-D [Matched known repeat from this family], //