Array 1 20745-19612 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024930.1 Thermus thermophilus strain AA2-2 plasmid pAA2-2b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 20744 29 96.6 32 ............................T CCTCCAGATACCGCCGCAGGGCCTCCCGCACC 20683 29 100.0 32 ............................. CTTCCCGGCCCCTTCTTCCTCGCGGGCTTCTC 20622 29 100.0 33 ............................. CGGGTGAGGGACATCGCCAAGGCGGCTCACCTC 20560 29 100.0 33 ............................. AATGGCTTCCCCGGTGGGAAGGGCACCTGGAGC 20498 29 100.0 32 ............................. GGGGGGACGTTTCCCGGGTCACGCGGGCCGAT 20437 29 100.0 32 ............................. CCTCCTCCTCCACCACCTTCCACGCATGGGCC 20376 29 100.0 33 ............................. TGGAAGCTTACCAGAGGGGGCGGAGGGGTTGAC 20314 29 100.0 32 ............................. AGGCTTTTGTGCGGTACGGTTTTAGCGATGTA 20253 29 100.0 32 ............................. ACCGTGGCGGAAAGCAGGACCCACCTGGAGTT 20192 29 100.0 32 ............................. GAGGTTGGGTTCCCCGGCGGGCTCCCCCTGGA 20131 29 100.0 32 ............................. TCCTGAAGCGGCTGAGGGACCACGGGTACCTC 20070 29 100.0 32 ............................. ACGCCGCAAGAGCTACGGGACTGGTGGGAAGT 20009 29 100.0 32 ............................. CATCTTGAAAGGAAGAACGAAGCCTTGATAAA 19948 29 100.0 33 ............................. TTTATCGCTATCGGGAGGTGGAAGTGATGATGC 19886 29 96.6 32 ............................T ATCTGGTCCCGGGTGAACCGCCCCACCTCCAA 19825 29 100.0 31 ............................. GCGCCATCTAGATTGGGGCGGCGGTCCTCCC 19765 29 100.0 34 ............................. GACCTCTTTAGGGTTAAGCATTTTCCACCTCCTC 19702 29 100.0 33 ............................. CTCTTCACCCAGGACGGCGTGAACCCGTTCGCC 19640 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 19 29 99.6 32 GTAGTCCCCACGCACGTGGGGATGGACCG # Left flank : GAAGCATGCGGGCGAGTTTGTCCAAGGCCATGCGGTACTGGCGCGTGGGGGCCTGGTGGTAGAGGAGCCTTCCCGCGGCGAAGAGGGCCAGGGCCTCTATCGGGTGGAGGGAAGGGGGGCGGTCGGCGATGCGGTAAAGCCCCCGGGCCAAGCGCTCCACGGGAAAGCCAAGGTCAAGGAGGGCCTCGAGGTCCCGCTCCACCGTGCGCTCGCTCACGCCGAAGCGGCGGGCGAGTTCCCCCACCCGCATGGGCCTGAGCTTTAAGGCCTCGGCCATCTGCAGGAGGCGGGCGCTCTTGGCCTCTTGTCCCATGTGTTCATGCTAAGCAAGCCGTTTGGGCCAGGGTGTGATTTTTGACCATGCTATACTGGGACCAGCGCCCACCCTGGCCTTTTCCCCCCCGTTCGGGCGCTGGGGAACTTGACAGGAAAACCTGCAATCCTTCCTAAACAGACACATAAAGGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCCCACCTTGCGCTCCGCTTCACGGTAGGCTACCCTGGAAGTGAACCCACCGGGCTGGGCCTGGGTTCCCGATAGCCCGGTGCAGGACGCGCGGCCCTCCAGGGGGCCGTTGCCCGTTTTTCAGGACACCCCCACCAGACGCCTTTCCGTCCGACGGAAGCTTCCCCGGGCCGTAGACTGCCCTCATGAAGCGAAACGCTTGGGAGGTGTACGGCGAGGTTCTTAAGACGGCCCGGGAGCTTGGCCTCGAGGGGGAGGAGCAAGAGGTGGCCAAGGCCCTCCTGGCCTGGCCCAGGGAGCGCTTCCACGCCTTCGCCGCCCGGGTGGGCCTGAAGGCGAAGTACCTGCGGCACGACCTTCTCCCCATCGCCTTCCTCCCCGATCCCCTGCGGGAGGCGCTCCAAGGGGGGCTTCCCCTCCGGGAGGCCCACAGGCTCCACCGGCTCCTGAAGCGCGGGAAGCTTTCCCTCCAGGACCTAACGGGCAAGGACCCCAAGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30558-32554 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024930.1 Thermus thermophilus strain AA2-2 plasmid pAA2-2b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 30558 29 100.0 32 ............................. AAGCGCCGCCGCCTCGTGAAGCTGGGGGGGAC 30619 29 100.0 32 ............................. GCCCTGGCGGACATTATGGAACAGAACGCCAT 30680 29 100.0 33 ............................. TACGCTGGCATATCTCACCTCACTTCACCCCAC 30742 29 100.0 33 ............................. GTCCGCGTGGACACGCCTGACGGGTACACGGGC 30804 29 100.0 33 ............................. CCCGCCGCCAACACCTCCGGTTTGTGCGGGACC 30866 29 100.0 33 ............................. AAGCCCCAAGAAAACGAGTGCGGCGGAATACCC 30928 29 100.0 33 ............................. GTCAAAACCCATCCCTTCACCTCCTCGTCAATC 30990 29 100.0 32 ............................. CGCACGGCGTAGATGTCCGTCAGGCCGCTCGT 31051 29 100.0 32 ............................. GATGCCTCCGGCGGTCACGGCTCCCGTGCCGA 31112 29 100.0 32 ............................. CCCCCTCGCTTCGGCCTCCCGAACGACCTCCA 31173 29 100.0 32 ............................. ACCCGCCGCCCCTCTAGGATGTCCCGGTACTC 31234 29 100.0 33 ............................. GGCGAGGCGGAAATCGGAACCAAGGGCGTCCGC 31296 29 100.0 32 ............................. AGTTCCCCAGGCATGTTGTCCACATGCTAAAC 31357 29 100.0 33 ............................. GGGGAGGAACCTGAGGACGTTGCTGATGATGTA 31419 29 100.0 33 ............................. TCCATGCCGTTCACCAGTAGCGCGCTCATGCCC 31481 29 100.0 33 ............................. ACCTCGGGACGGAGGGCCTGGGCCAGGCTGCCC 31543 29 100.0 34 ............................. CAACTCCAGATCGGGGCGCTTCTCCGGCGCTGGC 31606 29 100.0 32 ............................. GCGGTGTTCCAAGTCAGGCTACTGGCCCACCT 31667 29 100.0 32 ............................. GCGGCTAGCCCGAGGGCCCCCACCCCTACCCC 31728 29 100.0 32 ............................. TGAACCTTAGCGCTTCACGAGCCTCCTCACCA 31789 29 100.0 32 ............................. GCTAGGGTCCAAACCCCGACGCCGACAACCCC 31850 29 100.0 33 ............................. CACTGGTGGCATGTGTTGCCCGGGGCGCTCCGC 31912 29 100.0 34 ............................. CTCTACGAGGCCATCCTCCTCCAGGCTGGCGAGC 31975 29 100.0 33 ............................. AGGCCCTATCCGCCGTGGGGAAGGACTGGAGGC 32037 29 100.0 32 ............................. TCCTGGGAGGCCCCCCAGGACCTCGCGGACGA 32098 29 100.0 32 ............................. CTTTCCTCACATTCTGGCGGAAAGCTTTGCTG 32159 29 100.0 32 ............................. AATCGCCTTGCGGGTAGAGGCGTCCGGCACAA 32220 29 100.0 32 ............................. CAGGCAGCGTAAGACGCAGCCCGTCACCTGGC 32281 29 100.0 33 ............................. GAGGGAACCATGAAGCAGGTTAGCACGCAGGCA 32343 29 96.6 32 .......T..................... TCCGGGGCCTCCTCCCCACCTTCTAGGGGCTC 32404 29 89.7 32 .............AC......G....... GGGAGCGCCCGGCACCTCGCGGCCTTCAAGGT 32465 29 93.1 32 .............AC.............. ATCTCCGATCTAGAGGCTCAGGGGGTGTTCTG 32526 29 86.2 0 ........T....CC..........G... | ========== ====== ====== ====== ============================= ================================== ================== 33 29 99.0 33 GTAGTCCCCACGCGTGTGGGGATGGACCG # Left flank : AGACCCCACCCGTCCTGGGGGCCTATGGGACCTCGAGGGCGAGGTGGAGGGCGGGGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTGCCGAGGAGCCTGAGGGGTGATCTTACCCGTTTTCTGATAGAGGTGGACACCGGGGTCTTCGTGGGCCGGATCAGCGCCACGGTGCGGGAACTCCTCTGGGAGCGGGCCGTGGAGAAGGCCGAGGGCGGCCGGGTGGCCCTGGCCTACCGGACGAACAACGAGCAGGGCTTCGCCTTGCGGCTTCACGGCTACCCGGACCGCTTCCTGCGGGATTTTGATGGTATAGTGCTGGTGAGCGTTCGGAACGCCGAGGCGGTGCGGAAGGCGGAGAAGCTGTCTAGGCAAGTTGAGAGGTACAAAAAACGGCTTGCCAAGGGTTCCGAAGGGGATCTTGAAAGCCAAAGTCCGTAACTGCTCCCGAATAGACACATAAACGGGGGTGAGCGGGCGTTTTTGCCGTCCTGGTCATGT # Right flank : GGCGCTAGAAGGCCCTCACCTCCACCCCCGCCTGCTCCAGGGCCTCCCGCACCGCCCTCGCCACCTCGGGGGCGTTGGGGTTGTCCCCGTGGATGCAAAGCGTGTCGGCCCGCACCTCCACCTCTCCCCCGTCCAGGGTCTCCACCTTTCCTTCCAGCACCATGCGCAAGGCCCTCCGGGCCGCCTCCTCGGGGTCGGTGATCCAGGAGCCTGGCATGGAGCGGGGGGCGAGCTGGCCGTTTCGCAGGTAGGCCCTTTCAGGGAAGGCCTCGAGGACCACCCTGAGCCCCGCCTTCCGCGCTTCCTCCTCGTACACCGTCCCCGGAAGGACCACGAGGGGAAGCCCCGGGTCAAAGGCCTTCACCGCGAGGGCGATGGCCCTCGCCGTCTCCCGGTCGCGGCAGGCCTTGAGGTAGAGCGCCCCGTGGGGCTTGACGTGGTGGAGAGGAAGGCCCTCCGCCTTGAGGAAGGCGGAGAGGGCCCCGATCTGGTAGAGCACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCGTGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 271387-271650 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024930.1 Thermus thermophilus strain AA2-2 plasmid pAA2-2b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 271387 36 100.0 42 .................................... AGGGGGTCTCGCCTAGCTTCTCGCTAGGCCTTTAAGGTCTTG 271465 36 100.0 39 .................................... CGCAATGTGGGCAGATGGCGCGTGGGGCCTGGAGGTCAT 271540 36 100.0 39 .................................... CTTTCCTCCTAGCGCTCCGCGCTTTGCTTACGGGGATAG 271615 36 91.7 0 ................................ATG. | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 97.9 40 GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Left flank : GGAGGCGCGCTTCCTGGAAGAAGTGGCCCACCCCCTGGGCTTCCGCAAGCCCCTGGGGGAGCTGATAGAGCTCCAGGCCCAGCGGCTGAAGGCTGCCCTCTTGGGGCGGAGAGAGTACACGCCCTTTTACTTGCGTAGGCACTAGCAACTACACTTATGCCCGAAATTGCGGGGCGAAGGCATGTTAATCGCTTTCTCATCTCTCAGTTTCCTTTTTCAAGGGCTTTTCCGCCCAAAAAACAAACCCGGTCCACCGTTGCCCTGAGATGCTATAATGCCTTTGTCCGGACCTCCGGACGGGGATCTTGAAAGCCGGTTTTTCCCTTGCGGAAGGCGAATATGCGTTTTCCCCTTCTCATCGCCCCTTCCTCCCGTGGCTTGGTATGGGCAAAAAACCCCGAAAACCCTCGTTATTCGCCGTGTGCATATTCCAAGCTTCATCTTTCTCACAACCCCCCCACTGGCGGCGCCGTCCAGGACGGGGTTCTTTGGGGGGTACA # Right flank : CTTTGACCCTTCGCGGGCGTGTGGCTCCAAAAAGCGCTTCGGGCCCCCGGGCTGGTATCGTGGGGAGCGAGGAACTTTTCCGCCCGGAGGTGGACGGTGTGGCGGTCTTTGCGGGTTGACCTGAAGGCGAGGAAGGCCTACTGGCAAGAGGTTCCGCCCGAGGAAGTGGCCTTCGGCGGGCGCTACCGCACGGGGAAGGTGCTTTTGGAGCGGGAGGCCTACCGCGTTGACCCCCTCTCCCCGGAAAACCCCCTGGTCTTCGCCGTGGGGCCCCTGGCGGGGACGGGGTTTTCCAACGCCAACCGCACCAGCGTGGGCACCCGTAGCCCCCTCACCCTGGGCATCAAGGAGGCGAACGGCGGGGGCACCTTCGGCTACGCCCTGGGCCAGCTGAAGCTCGCCCACCTGGTGCTGGAGGGGGAAAGCCCCGAGTGGGTGGTCCTCCGCCTCACCCGGTCCGGGGAGGTCCACTTTGACCCCGCCCAGGACCTCCTGGGCCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGGGATTGAGCCCCGTAAGGGGATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //