Array 1 56393-61160 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFJT01000004.1 Delftia sp. JD2 contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56393 28 100.0 32 ............................ GTCACCCAGGCCATCCGCCGCTATGACGAGCG 56453 28 100.0 32 ............................ TCCAAAAACTTGAACGAGGGCACGTACTGCAG 56513 28 100.0 32 ............................ ATCAGCATGTCATTTAGCATCAGTGCACCCCG 56573 28 100.0 32 ............................ TTCAAGCGTAAGGGGGTGCTGGACAGGCCGCT 56633 28 100.0 32 ............................ TGCAAGCACTCGGACAATTACAGGCCCTGAGC 56693 28 100.0 32 ............................ AGTCGCAGAGTTGACGCCTGATATAGATCCAG 56753 28 100.0 32 ............................ ATCGGGCGTACCTTCGTCCTGGTCTACAACGA 56813 28 100.0 32 ............................ AACCAGTTCTTGAAGGACCAGGCCCAGCTCAA 56873 28 100.0 32 ............................ AGAAGGCCGGCGACATGACCGAGCAGAACTAC 56933 28 100.0 32 ............................ TGACCGTCGAAGAGGTGACCAATTTCCTCGGA 56993 28 100.0 32 ............................ ACAGGCGTCGCGCTTGTTGTGCTCTTGACCAG 57053 28 100.0 32 ............................ GCGTGGCCTCATACACAGCGGCGGCCTGAGTG 57113 28 100.0 32 ............................ TGTGTCGCCAGCCTTGATCCGAGACAGCGTTC 57173 28 100.0 32 ............................ TGCAGGCGGATCTGCAGGAGGCCTACCGCGAA 57233 28 100.0 32 ............................ TTCCGCGACTGGGCCGGAGACCATACGGAGTA 57293 28 100.0 32 ............................ ACCGACGCCAACTGCAGCGCTGGCAATGGATC 57353 28 100.0 32 ............................ TCAGGCCTCCAGGCGTTCAACGCGCAGCACGG 57413 28 100.0 32 ............................ TTAGCCTGCACCAACTTCGAGTGCGGCCACAC 57473 28 100.0 33 ............................ AAGAGGACTTTGGAGCGCTTGCTGGCATCTCAA 57534 28 100.0 32 ............................ GTAGCGCGGCGGGCGCGACACGTCGAAGAAGG 57594 28 100.0 32 ............................ AAGCGATCTACCTGCGCCGCGCCATGGCCGAA 57654 28 100.0 32 ............................ AGCAGTAGAAGTGCCGCCGCTGCCCTGGATGG 57714 28 100.0 32 ............................ ACCCGGCCGAGGAGGTCACAGCCGCGAACTGG 57774 28 100.0 32 ............................ TCTTCGTCATCGACTTGAGACAAGAGAGCGCA 57834 28 100.0 32 ............................ AGTTCGCCACCGCTCGGGCGCATCCACCACGC 57894 28 100.0 32 ............................ ATGAAGCTCAGGCGGTGGCCGTTGAACCGGGC 57954 28 100.0 32 ............................ CCTGCTGTCCCTGCGTGTCACCGAGATCGCGG 58014 28 100.0 32 ............................ TTGAAGAGCCACTCGGCCGGCATCTTGTCCGG 58074 28 100.0 32 ............................ ATCAAGGCCGCGATCCTGTCGGGCCGCATCGG 58134 28 100.0 32 ............................ GAAAGGCCCCAGCCAAGGCAGCCGCAAACACC 58194 28 100.0 32 ............................ AGCAGAGCACGACGCGACGCACTGGTGCGACA 58254 28 100.0 32 ............................ GGCCAGGCCCAGCTCCTACCTCAACGCTCAGG 58314 28 100.0 32 ............................ AGGAGCACCAGCCGCATGCTGTTCGGCAATCA 58374 28 100.0 32 ............................ ATCAAGCGCGTGCACGGTGAAGGCCACCTCAC 58434 28 100.0 32 ............................ TGACCAAGACATCTGCTGTGGCCGTCCGTGAG 58494 28 100.0 32 ............................ TCTACGAAGAGATCCACATCGAGCCAGGCTTC 58554 28 100.0 32 ............................ GGCCTGAGCAATGCCGGGCGCGACCTCCGCAT 58614 28 100.0 32 ............................ AGATGGCGACGCTGCAGCTCGATCTCCGACTG 58674 28 100.0 32 ............................ ACAGCCACAGTAGCGACCAGCGAGAGGGCTAC 58734 28 100.0 32 ............................ AGGCCTTCACGCGACCCGCGACGTTGATGCTA 58794 28 100.0 32 ............................ AGCACCCGCTGCGCCACGAAGTCGATGGCGTC 58854 28 100.0 32 ............................ ATCAGGCCCGGCGTCTGGTATGCGCTGGATAA 58914 28 100.0 32 ............................ TGCCCGAGGACTGGACCATGCCGACGATGGGC 58974 28 100.0 32 ............................ TGGCACGTCTGCACGAGGCCCATGCGGGCCTT 59034 28 100.0 32 ............................ TACAAGGGAACCAGCATCGAACTATCAAACCA 59094 28 100.0 32 ............................ ATCACGCCGGGCCCCGACAAATTCACGCTGGG 59154 28 100.0 32 ............................ GTGGCGAGCCAGATCAATGACGCTTGGCTCCA 59214 28 100.0 32 ............................ AGGAAGGCGAGCGGCAGGTAGAGATAGCCGGC 59274 28 100.0 32 ............................ TGGACCCGAGAAACTGCTGGTGGCTGGCGTCA 59334 28 100.0 32 ............................ ATCTGGTCCTAGCTAGGAGCGTCGTGCGAAGC 59394 28 100.0 32 ............................ TCAACCCATGCGATAGCGCCAGGCGCGGGCGT 59454 28 100.0 32 ............................ ATCCGCCGCGCTCGGCCAGAGCCTTGCACTGC 59514 28 100.0 32 ............................ TGCAGGGCCTTCGTCCGGCACATGCACCAGCG 59574 28 100.0 32 ............................ ATCACGCACCTCCATCATTGCCGTAAAGACGA 59634 28 100.0 32 ............................ GACATAGAGCTGCTGCGTGCCGTCTCCGGCTA 59694 28 100.0 32 ............................ AGCAGCTCGCGCGGGTCGGAAAAATAGCGCTC 59754 28 100.0 32 ............................ TTCCGTGGTCGGTCGCTCCACCGCCACGCTGT 59814 28 100.0 32 ............................ AAGGGCTGGTTGCCCTCTCCGCGAATTTCGCA 59874 28 100.0 32 ............................ TTGCCGAAGGCGTTGCGGTTTTTCTTCTCGAC 59934 28 96.4 32 ...................A........ TAGAGATGGATCCGGATCGACACTTCCGTTCC 59994 28 100.0 32 ............................ GCCGACGCCTGTGACCATGTCGCGGCGCACGT 60054 28 96.4 32 .........G.................. GGCCCTGCTTTCCGGGGCACCATCGCAGATAG 60114 28 100.0 32 ............................ ATCAGGTATCCGGCGCCGGGGGAAACAGAGAA 60174 28 100.0 32 ............................ GTGCTCACGCATCCAGTTCAGATGCGAGGACA 60234 28 100.0 32 ............................ ATGCCGCCGAGGAGCGCGCCCGTGCCTCGGCC 60294 28 100.0 32 ............................ AGGCGCAGGGCAGCGAGGCGACCACGCGGCGG 60354 28 100.0 32 ............................ AAGAAGAGGGTGGGCCTGTCCGGGCCAGAGCT 60414 28 100.0 32 ............................ GTGTCGTGCGGCCCGTTGAACGCGCGGATGCC 60474 28 100.0 31 ............................ AATACGGGGGGTCCAAATAAACAGCGTGTGC 60533 28 100.0 32 ............................ TTGGCCTGGACCTGGGCGCTGTATGCCTGGAC 60593 28 96.4 32 ....................T....... TGGCCCAGATCGAGGAGCCGGCCGGGGCAGCT 60653 28 100.0 32 ............................ AACGACGCAAGAGCTGTATGCAGCTGCAACGC 60713 28 100.0 32 ............................ AGCACCGAGGCTCCCACGCGCTGCTCGATGGT 60773 28 100.0 32 ............................ AGCAGAAGAAGACCAGCGCGACCAAGGCGCGC 60833 28 100.0 32 ............................ AATCGGGGCCTATGACGATGCAGGAGTCGTCT 60893 28 100.0 32 ............................ TTTTCATAGTCCCAGTACGGGAAGACGCACCC 60953 28 100.0 32 ............................ ACCAAGGGTGAAATGGTCGCAATCGACGGCAC 61013 28 96.4 32 ............A............... AGCAGAGCAGCAGTACGCGATGGCGTCGTTCA 61073 28 96.4 32 ....................A....... TTACCCCCTCAACGCTGCAAACATCAGTTGGA 61133 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================= ================== 80 28 99.7 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTACCTGGTGCAACGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCTGAACAGGCCGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGTCTGTTCGTGGAGCAGAAAGCGGTGCAGGGCACGGTGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTTTTGGCGGCCTGAAGACTGCCTTGTAAATCAACAGCTTGGCGGATGCCCCGGAATTTGGGGTGTTTGCCAGCTGGAGGTGAAAGCTCTTTCAAAATCAATGGATTAGGGAATTTTTTGCCTA # Right flank : AGGCTGCTGACTTGGATGCGACAGAGAAGCCTCTGCCCTCAACCTTCCGGGCCATGCTCCGCGTACTCCACAAAGGACGGTGCTTCATCAAACAGTTGCAAGAGCAGTTTCAGGTGCCGAGCGTAGAGGCTCTGTGGCCGGTCGAAGGCCTGGGCGGCCAGAGCGATGGCTGCGCGGGCGAGGTACCACTCGTTGTCGAATTCGCTGGCGTCCTCGAATACCTTGTGCCGAATTTGCCGGATGTGGTTCAGCGCCAGGTCTGCGGCCAGGTCCACCTCGACATCCGCGTCATGCCAGTCCATGTCGGCACAGCGTGTTTCGATCAGGGCAACCAGCCCCATCTCTGCGCGGGCAATGGACAGGGCGATCATTTGCTGCATGGTGGGCCAGGCAGCGGTGTCTACTGGGTGCGACTGCTTGGACGCGGCATCCATGTCGGTAACTCCTCCCGATTCGGTATTGGTGCGTGGCAAGCCACTCTGAATCTATTAGATATCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //