Array 1 936556-937111 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911785.1 Pseudoleptotrichia goodfellowii DSM 19756 Lepgl_LGA, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 936556 30 100.0 36 .............................. TAACTTCTTTACTTAATTTTTTCAAAGCTTTATTTT 936622 30 100.0 36 .............................. CTTCTTCTGTTGCTTTTAAGTAGCTTGCGTCTAAGA 936688 30 100.0 36 .............................. TGAAGAGGACTTCCGCTGGCAATCGACACAGTTGGA 936754 30 100.0 36 .............................. GAAAGATTTGCAATAGCAATGATTGAGCGAGGTTGG 936820 30 100.0 36 .............................. ATATTTTTAGGCAATGAATTGAATATAAAGTGTTCA 936886 30 100.0 35 .............................. TTGTTAGTTTCATTATCTGCTTTGTAAGGACTAAA 936951 30 100.0 37 .............................. ATAAGCACGATCACCTGAGCCTACTCGGTTTCCTACA 937018 30 100.0 34 .............................. TTATTAGTGAAGAATGGGATGTTATTAGAACAAG 937082 30 93.3 0 ................G.........G... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTATTAATCGAGCAGACTGTAATGTAAAT # Left flank : TAAAATATGGTGGTAATATGTATGTGATATTAGTTTATGATATTTCAACAGATGATGATGGTGGGAGAATTTCCAGAAATATTTTTAAGATATGCAAAAGATATCTCACTAACGTTCAAAAATCGGTTTTTGAAGGAGAAATTACTCCTGTTTTATTAAGAAAACTTTATTTGGAATTAAGAGGATTTATCAGAGATGATAAGGATTCCGTATTATTATTTAAAAGTAGGCAGGAAAAATGGTTGGAAAAGGAATTTTGGGGCTTGGAAGATGATAAAACTTCTAATTTTTTTTAAAGTTGTGTTTTAAATCTGTCGATATTCAATAATATAAAAATTACGGGAGTTAGACAGAAAGTTTAAAAATACCGTTTTTCTTGATTTGGATTAAAAAAAGAAAAAGAATAGGATTTTAAAAGTGAGAATTCAGAATAGGAAAAAAATAAGTTCGACAAATTAAATTAAAAATGTTATTATAAATATTATGATATTTTTAGTAAA # Right flank : TTTCTTTATTTGTCAGTCACGACTGACAAATAAATGAGCAATAAATATTATAACTAAAATATATCAGAAAAGAGAGTTTTTGAATAAAATCATGATTCGGAACTCTTTTTTATTTGCAACTATAATCGAAATATATATTATATATAAATAATTTATAAAAAAGAGAGGCAAAAATAATATTCAAAACTATTGCATTATAATTATAAAAATGTTATTATTTTTTAACATAAGATAAAAAATGTATATAATTAAAAATGTAGGACAGTAGGAGGGTAAAAATGAAAAAAATGTTATTATTACTGGGAGCAATCACAGTATTTATTTTAAGTTGCGTAGGAAAAGAAGGACAGTCATCAGGTAAAAAGGAGGAAAGTAAGAAAAAAGTAAAAATCGGAATAATGCAGATTACAACTCATCCGGCATTGGACAGTGCAAGAGAAGGTTTTAAAGAAGCATTTAAAGAAGCCGGTTTAGAAGTAGTTTATGATGAAAAAAATGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTAATCGAGCAGACTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 1888281-1886534 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911785.1 Pseudoleptotrichia goodfellowii DSM 19756 Lepgl_LGA, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1888280 30 100.0 36 .............................. GTTCGTTAGTTAATTCATCAATATCAACTTTGGAGT 1888214 30 100.0 35 .............................. AAGTAACTAAAAGAGAAATAAAAGTAACAACAACA 1888149 30 100.0 36 .............................. ATTTGAAAAAAGTGCAGGAGTTGAAGGAGATCCTTT 1888083 30 100.0 37 .............................. TATCCAAACTAAGGTAATGATTTATAACTTCTCTTTC 1888016 30 100.0 37 .............................. TATCCAAACTAAGGTAATGATTTATAACTTCTCTTTC 1887949 30 100.0 37 .............................. ACAGTAATTTCCCATTCTATTAATAGAAGTTTGGAAA 1887882 30 100.0 36 .............................. ATTACAATAAAATTTAAGTCTTTATGAGCGAAATTA 1887816 30 100.0 35 .............................. TCAATTTAGTATGTTTCTTTTTACTTTTTATTTCA 1887751 30 100.0 36 .............................. TCAAAAATAAATTACAGTATCGATTTTGACTATTTT 1887685 30 100.0 36 .............................. GTTTTTAGAAAAATAGCTTTTAATGAAGTGGCTATA 1887619 30 100.0 36 .............................. AAGAAAATAAAGGCGAAAAAGAGATTATCTCTTTGT 1887553 30 100.0 36 .............................. TTCTTATATCTTGTTACCTTGGTTGCATATTTCAAG 1887487 30 100.0 36 .............................. CTGCAGGATTTATGCACAGTAAAAAATATGTGATAG 1887421 30 100.0 36 .............................. CAGGCTTTTCTATTCCTTTAGGTCTTCCTTTTCCTC 1887355 30 100.0 36 .............................. GTGTCAAAAACAACTTTTCCAGTTGCTAAAAATTGT 1887289 30 100.0 36 .............................. AGTGGCTTTGAGCCTAAAAGCGAATACACAAATACA 1887223 30 100.0 37 .............................. CTTTATTAATATTAAATACTTCCACCACAGGATTACT 1887156 30 100.0 36 .............................. ATTTCAGGAATAAAAGCGGTACGTATTAATTGGGAT 1887090 30 100.0 36 .............................. ATATTTGAACATATAGAGTATGCTAAAATATCTGTT 1887024 30 100.0 36 .............................. ATATTTGAACATATAGAGTATGCTAAAATATCTGTT 1886958 30 100.0 35 .............................. ATATTTGAACATATAGAGTATGCTAAAATATCTGT 1886893 30 93.3 36 TG............................ AACTTCGCTAAAAAGGTACTTTTCCCAATCCCTTGA 1886827 30 100.0 37 .............................. GCCCATCAACCATTTATTCAACCAAGATTGAGTATAT 1886760 30 100.0 36 .............................. CTATAGTAATATATAATGTTCTCCACTTGCCTGTAG 1886694 30 100.0 36 .............................. CGCAAAATACTCTTATTTTATTTTCTTCAAAATGTT 1886628 30 100.0 35 .............................. TTATAAAGTGAATGAATAAGTATCCCTACTAAATA 1886563 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.8 36 GTTTTTAATAGAGCATTGTGTAATGTAAAT # Left flank : CAGGATTATGGATATGAAAGTAAACAGGCATTGATGAATTTTATAAAAAATAAAGATGTGAAAATAGAAGGAAAGAAAAAAGACAGATACGGAAGACTAATCGGAGTTGTTTATCTCAATAATGAAAATATAAATGAAAAAATGGTAAAAACCGGAAATGCCTGGTGGTATGAACAGTATGACAGGAAAAACCTAAAAATGAAACAGTATCAGGAAAGTGCTCAAAAAAGCAGAATAGGGCTGTTTGCTAAAAAAGACTATGTTACTCCTTGGGAGTTTAGGAAGAGGAAAAAGAGATAAAGTTAAAAAAATCTGTCGATTATGAATAATTGAAAAAAGACTGTACACCGACAGAAATTCTAAAAGCCTTGTTTTTAGAAGAAAAAGATAGATTACGTAATAAAAGTTTTTAAGAAAAAATAAAATAAAAGTATCAAAAAATTTTTATCGACAAATTTGAAGAAATCTGCTATTATAGTTAGTGTAAAAGTTTAAATAAG # Right flank : AATTGGATAAATATAAAATAACAAGGAGGCAGAGAGTAGTAATTAATTTTAATGAAAAACTTGATTTTTAATAAAAATGAGATATAATTTAATTGAAAAATAAAAAGGAGTGAAAAAATATGATAGATGACAATAAGAAAAATATAGAAAATATTATTAAAAATTATGTAATGTATGAAAAAGAATTAATAAACCAATTGAACTTTCAAATAGAACATTCAACTACAATTGGAGGATTCAGAGAAGAAATTTGGAAGTCCTTTTTTGAAAGAATAGTTCCTAAAAAGTTTAAAGTGGAGCGTTCGGTTTTTATAATGGATTCTGAAGGAAGTTTTTCTAATGAAGTTGATTTGGCTATATTTGATGAACAGTATACACCATATGTATTTAAATATGGTCAAATAAAATTTATACCTATTGAAGCTGTTGCGGCTGTGATAGAATGTAAAAGCACTAATTTTAAAAATGATAAAATAAGAGAATGGATAGATAAAATAGAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAATAGAGCATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //