Array 1 35-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000148.1 Alkalihalobacillus clausii strain 7541 contig00148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 35 32 100.0 34 ................................ GAAAAATGTCCTGGGATGAGCCTGCTTTAACGAT 101 32 100.0 34 ................................ TTTTGTTTAATAATTTCACGTAATGTACCGTTAG 167 32 100.0 34 ................................ TTCCCTGTACGGTGTTTGTATTGCTCATATTTAT 233 29 87.5 0 ............................T--- | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.9 34 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : AATTTTTTTACCCATCCTCGTATATACATCCATGG # Right flank : | # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20087-20852 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000048.1 Alkalihalobacillus clausii strain 7541 contig00048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20087 32 100.0 36 ................................ AACGCGCTCCCTGTAGACGTGTAAGTATCGCTCGTC 20155 32 100.0 36 ................................ GCTTTGCAAATGGATAGCAGACAAGTGGGGTATATG 20223 32 100.0 37 ................................ CAACTCGGCATAACAACTTTCAGGTCCTCCATTGTTT 20292 32 100.0 34 ................................ CCTGTTACCTCTTTAGAGAGCTTGTTAAAGCTAT 20358 32 100.0 33 ................................ TTTTTTTCTTTGATTTATATAATCCTCAATCAT 20423 32 100.0 35 ................................ TTGTGGTGTCATACGTGCATAAGCGTCACGATCAA 20490 32 100.0 33 ................................ AAGAAATTTAAATCCTCCACTTGGTTGAATAAA 20555 32 100.0 35 ................................ GTTAAGGCTCATAATAGTAAATCCTCCAATATAAT 20622 32 100.0 33 ................................ AATAAACTGCAAGATCACGTTATTGCAGATTAC 20687 32 100.0 36 ................................ CGCAATATGAAGCCTTTAACCGCGGCGAATTATCGG 20755 32 100.0 34 ................................ TCAATATCTCGTACAAAGTTTGATACCTCCGCCA 20821 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 100.0 36 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGCAAAAAGACATTAGATTTTAATCTATGATAATTAAAATGGAGGACGTGATATAATTTGTATAGTCTCACTCGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : GTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 22-385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000050.1 Alkalihalobacillus clausii strain 7541 contig00050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 22 32 100.0 37 ................................ AACCACAAATTCCCCTCTGCGAGAGAAGCCTTAAAAA 91 32 100.0 33 ................................ AATTTGAAAAACACCCGAATGATTATTCATGTA 156 32 100.0 35 ................................ GATTTCCTGGTTATACATGACCAAGGCGCTCCTGC 223 32 100.0 34 ................................ GATAAGCGATTTCCGCGTTTCGCATCGCCCTTGC 289 32 100.0 34 ................................ GTCCCTCAGAAAGAATTTGAGTTTATGGGCCGTA 355 31 96.9 0 .........................-...... | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 99.5 35 ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGACGGCTCCTCGTTAGATTTA # Right flank : ATATTTTCAATTCGATACAAATGTAACCCCGTTTTATTTAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTACGTTGACGTTCGGACTTCTGATCGTTGCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 38685-39317 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000044.1 Alkalihalobacillus clausii strain 7541 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 38685 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 38751 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 38817 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 38884 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 38952 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 39017 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 39084 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 39150 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 39286 31 78.1 0 ............T........AC..-...TCA | A [39296] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 9 32 94.4 43 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 53007-53573 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000044.1 Alkalihalobacillus clausii strain 7541 contig00044, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 53007 32 100.0 35 ................................ ATAATTGATCTTTGTTTTGTAACTTCCGACTTTAT 53074 32 100.0 34 ................................ TCATTTCCCCAGCAATGGTTAACTCGTCACCCTT 53140 32 100.0 36 ................................ GAGGATGGCGCGGGCGTAACGCGTATAGACGTAGGT 53208 32 100.0 34 ................................ AAATCCATATGCTTTTAGTTTTTGAATTGCTGAT 53274 32 100.0 35 ................................ AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 53341 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 53408 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 53475 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 53542 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.9 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATGCCCCCTTCCCATCTATATAATCAATGTTTAGGATGCCCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGATAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGAGTTTCTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGTATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCCTTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCAT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9935-10302 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000051.1 Alkalihalobacillus clausii strain 7541 contig00051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 9935 32 100.0 34 ................................ TTGTAGTCTTTGCCAGTCGGCGGCAATATCTGCT 10001 32 100.0 36 ................................ CTGCGTGATTAAAGGCAAAGAAAACGACATGGTTTA 10069 32 100.0 35 ................................ AATATAGAGAAAAACCACCAACCAAGGACATTTTC 10136 32 100.0 36 ................................ CAGTCATTGCACTGTCCCAACTGTCGAGGGGTGTCG 10204 32 100.0 35 ................................ ACTTGGGGGAGTAATCCCCCCTCTGGTTGGCATGA 10271 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : AAAAATGCACAAGGTCAAATAGATAAGTTGGTTGTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43-275 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43 32 100.0 33 ................................ CTTGGTGTTACCAATTCCTGTTGCTTTATAAGG 108 32 100.0 36 ................................ ATGAACCTCACAATATCTTTCACGCGTTAGCTTCCC 176 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 244 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CTGAAATTTATGACCGGTATCAGCTGAAGCTTGGGAAAAAGAG # Right flank : TTTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1035-2533 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 1035 32 100.0 34 ................................ ATCACTCTTTAGGATTTCCATTACTTTATGAGTC 1101 32 100.0 35 ................................ CTCACCAAACATGTGCTTCGCTGTCCGGTCAGAGA 1168 32 100.0 35 ................................ ACTTTCTACTACTGCTGTCACTTCTTCAGAAGGGA 1235 32 100.0 35 ................................ GGAGGAGGAAGACAACAAAATACCCCATTTAACTC 1302 32 100.0 34 ................................ GGCGCTATACTAGTCCATTCTTTACCGTCTACAA 1368 32 100.0 34 ................................ TATGTCCTCGATCATACATCCTTTTGATACAAAG 1434 32 100.0 34 ................................ TAGGAAGCACTCTTACAAATTGGAAGGTGCAATC 1500 32 100.0 34 ................................ TCGTCATTCCTCAATCCGTGACCATAGTGGTTCG 1566 32 100.0 38 ................................ GACTCACCCTCTTCAACGTGCTTTAATAATGCTTCCGT 1636 32 100.0 34 ................................ TCCGAACGCGTTTGAGATAACCTTTATCACTAAG 1702 32 100.0 38 ................................ GTATACGTGATCGATTTAGTGCTTACGGTGATGACCAG 1772 32 100.0 35 ................................ AATTCTTTCACATAATTGTTAGCCCCCATAGTGCT 1839 32 100.0 34 ................................ GGCTACAGGGTACTCGAACTCTGAATCGTCTACC 1905 32 100.0 33 ................................ GTTTACAATAATGTCCTAATGGGGGACCCTGAA 1970 32 100.0 34 ................................ GCTACAGAAGAATACGATAGCTCCAACCAATTTG 2036 32 100.0 36 ................................ ACAATCATATCGGTTTCAATTATATTTTCCAGATAG 2104 32 100.0 33 ................................ CAAAATCCACAATCACTCATGCAGTCTTTTAAA 2169 32 100.0 34 ................................ GGGTATTTATGATTTGTTGTACGGACACAACAGC 2235 32 100.0 33 ................................ AACTTTAATTTCTGTAATTTTAACTTGTTTTTT 2300 32 100.0 35 ................................ TTTCATAGTCTAGGTTTCGGACGACTGTAAAAATA 2367 32 100.0 33 ................................ CCCTGTGTCCATTCCTGATGACTGATTGACTGA 2432 32 100.0 35 ................................ ACAATCGTATGTCCGAGACTACCAAAACAAAATTG 2499 32 90.6 0 .......................A..C..C.. | CC,T [2522,2530] ========== ====== ====== ====== ================================ ====================================== ================== 23 32 99.6 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : TTTGTAGAAAAAGTCACCCTCGTTGGGTATGCGTAGATTAAAGTCCCAAAAGACATCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTTCAACATCCACTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCCAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTTCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATGCAACAGGAATATCTACAGCTTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCTGGTCTGGTTTTGGGCGATGATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 12225-12459 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 12225 32 96.9 35 ..........T..................... GAGGATTTATTCGGCAATGAATCGCCTATGATGTA 12292 32 100.0 37 ................................ CAAGCGATGCGGGAGCTGGACGCCGAGGACAGCCTGA 12361 32 100.0 35 ................................ CTCATCGCTGTTTGCGCAATTTGACGCAAATAGTT 12428 32 90.6 0 ..........TT..............G..... | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.9 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : GAAAAGTGCCTCCCACGAGAAATTGATGTGACGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTGAGCTGATGAGGGGAGGGGTATTTTCGAATAAAAGGATTTAGCATTGGTGTTTGAAGAGGGACTACCTTTAAAAATGAGACGAACAAGAACTCCAAACATTGGGTTTTGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATGTGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCGAAAAAGAGTCTGAATATGAGTAAATGAGTATGAAAATGTGAAAATGTGGTTTATGTTCCTTGATATAATGAAGGGAAAGTGCGACTTTCCTATTTTATTTGTGGTTTTATTTCCAGCAAATAGGGGACTTTCGCT # Right flank : TGTGTTTTAAGATCCTTGTACGGTGTGGCTGCGTTTCGCCCTTCTTGTAAGTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTCTTTGTTGCCTATTTTAACGCTGGCCAAAATGCTTTATTCGCCTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGTGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTG # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 18903-19671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 18903 32 100.0 34 ................................ ATATATTTGTTTGTTTCCATGCCGTTGTATTCCG 18969 32 100.0 33 ................................ CCGTCGCTCCGCTCGCTCTTATAAGCCTGCCCC 19034 32 100.0 36 ................................ GCTCCTCTTTGTTATTTGTTATTTATACTGTAACAT 19102 32 100.0 35 ................................ ATTGGTCCTTGTTAGAGGAGCTAAACAAGAGATTT 19169 32 100.0 37 ................................ CAAAAATAAAACCCCAATCACACAAAAGGAGCCAATC 19238 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 19306 32 100.0 34 ................................ TCCTTTTTTATGTTTTTTAGTTGGATAAAGAGGA 19372 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 19440 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 19506 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 19573 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 19640 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : TACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 26958-27586 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 26958 32 100.0 35 ................................ ACTTCCAGACGTAACTTGATTAAATGGGTATCATG 27025 32 100.0 35 ................................ CAATATACGCTCGGAAATCCTTTTTAAGCTTAACG 27092 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 27159 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 27225 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 27292 32 100.0 33 ................................ GTAAGTCTTGCCTGTCTCACGCGCCAGCTCCAT 27357 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 27423 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 27489 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 27555 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.2 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CCTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGT # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 34013-34309 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCF01000080.1 Alkalihalobacillus clausii strain 7541 contig00080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34013 32 100.0 34 ................................ CGTAAACAAACTCTTTCTTGATCGGTATGCAAAC 34079 32 100.0 36 ................................ CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 34147 32 96.9 33 ..........T..................... TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 34212 32 93.8 34 ..........T.A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 34278 32 71.9 0 ..........T............CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 92.5 34 GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Left flank : GTCAAACGATAAACGGAACGGTTCAGGAAACATATTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACTCATAGGGGAGAAGGGATGTTAGTAGGCAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCT # Right flank : TATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGTCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACG # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //