Array 1 65455-63476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHM010000004.1 Listeria welshimeri strain FSL W9-1334 NODE_4_length_370106_cov_90.801440, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 65454 29 100.0 37 ............................. AACGCAACAGAGAAAGAATTACAAGAAATTATTAATT 65388 29 100.0 36 ............................. CAATTTGTAGCTGATTGGATAAGTCACTGTAAACAA 65323 29 100.0 36 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACTT 65258 29 100.0 35 ............................. AGACAAGGAAAGGCAGATATTATCTGTGTCATAGA 65194 29 100.0 34 ............................. ATGATAGTTGATGATTACTGGGAAGATGGATTTC 65131 29 96.6 34 ......C...................... TTGTATAGATTAAAGGGGAGTACGCTACAATTAA 65068 29 100.0 38 ............................. AAAGACTTAGAAAGATTCGCGATTGGTTTGGATAAATT 65001 29 100.0 35 ............................. TCCGGCAAATCTTCACGAATGAATGTGTCTTCTAC 64937 29 100.0 37 ............................. TACGGAATAACAAATCATGACTGGGATGTGATTATTC 64871 29 96.6 36 ......C...................... TGTTTCCGCGAAAGAGGTAGGGTCAAAGCCTGTTAA 64806 29 100.0 36 ............................. CTGGTAGTTGATGAATACTGGGACGATGGATTTCGG 64741 29 100.0 37 ............................. CTGGTATATAATTTCTAATAGCCATTATTTAACCCTC 64675 29 100.0 36 ............................. TTTCTCGAGTAAATGGCCTAACATAGACGTGACGTT 64610 29 100.0 36 ............................. AATCAATCAATGCAAATTCATCGCTTTAGTTTTATT 64545 29 100.0 37 ............................. AGAATAAACGGAAATCCCTGCGGTCGTAACACGAATC 64479 29 96.6 35 ..............A.............. TGGTGGCGGCAACACTAGATTTACCGATTGACAAA 64415 29 96.6 36 ..............A.............. AGATATGTCCGGAACTCTGAAAAAGTCATATTTGAC 64350 29 100.0 37 ............................. TTACTTCGTTATTTTGTGTTCCAGCAAATCTACTTTG 64284 29 100.0 37 ............................. TCAATTTCTACTGCATGACCACTTTGATGTTTCAGGC 64218 29 100.0 36 ............................. CTAGTACTTGCCTCGTAAAACTCTTGACATGTAACA 64153 29 100.0 36 ............................. AGCTTTACATTTGCAACTGTAATTCCAGGAATTTTG 64088 29 93.1 36 ............C..........A..... TTTTTAAGATCATCTTTCAACCTTGTTTTATCTAAT 64023 29 100.0 37 ............................. TTATCTAGAAATGAGTGGTAATGGCTCAGTGAAAAAA 63957 29 96.6 35 ................A............ ATTTTTAAAATTTACAAACTTCATTTTCTGATTGC 63893 29 96.6 36 ................A............ AAGTCTGGAAATGCTCAAAGTTTAATGAGTGCTGGT 63828 29 96.6 36 ................A............ ACGCTTAATACAAAGCGTTCTTCTCTTCGATAATTA 63763 29 96.6 36 ................A............ ACTTTCATCGTAACCTTGTCCCAAACCAAGCGCGCT 63698 29 96.6 36 ................A............ ATTTTAGGACTCTAAGTAAAAGGAGATTACACTAAT 63633 29 96.6 36 ................A............ AGCGTAGTATCTTGTGAGTAAATACTTGCTAGTTTC 63568 29 96.6 35 ................A............ GTATTTGTAGAGGAACAACAAAAAGTAATAGACGA 63504 29 82.8 0 AG..............A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 31 29 98.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTTTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGGGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGATGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCGGCGAAAAACAATCCCCACACAAGTCCTGCTGCAAGAAAGCCGTTATAAAGCCCTTGATTCGCGAATAAAGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTATTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.95, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //