Array 1 50032-51360 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRH01000001.1 Listeria monocytogenes strain ICDC-LM3062 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50032 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 50098 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 50163 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 50227 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 50293 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [50305] 50361 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50426 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50491 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50557 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50621 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50686 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50751 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50816 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50879 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50942 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 51008 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 51071 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 51136 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 51202 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 51267 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 51331 29 93.1 0 .......................A....C | C [51354] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 510259-512476 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRH01000002.1 Listeria monocytogenes strain ICDC-LM3062 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 510259 36 100.0 30 .................................... TATTTAGAAACGCTTGTCTCTGTGCGGGGA 510325 36 100.0 30 .................................... AAAAATCTTCTGTACTTTTGATGATAGGTT 510391 36 100.0 30 .................................... AGGGACTAAGAGTTATAAAACTGGATTAGG 510457 36 100.0 30 .................................... ACATCACAGAAAGAACAAGATTAGGTGACA 510523 36 100.0 30 .................................... TAGTGATCTCGCAATACTACCTGTTCCTGC 510589 36 100.0 30 .................................... ATGGTACAAAAGAAGCTCTTGCAGAGGTAG 510655 36 100.0 30 .................................... AGACGATCAGTTCAATCAACGAAAAGTATG 510721 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510787 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510853 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510919 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510985 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 511051 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 511117 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 511183 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 511249 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 511315 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 511381 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 511447 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 511513 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 511579 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 511645 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 511711 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 511777 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 511843 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 511909 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 511975 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512041 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512107 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512173 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512240 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512306 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512372 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512438 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512463,512469,512472] ========== ====== ====== ====== ==================================== =============================== ================== 34 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //