Array 1 16820-18109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOV010000015.1 Streptococcus oralis strain MSK.15.92 LNBIKDDH_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16820 36 100.0 30 .................................... TAGCCAGACTAACGCTGACAAGGCCTATAT 16886 36 100.0 30 .................................... GCAGAAATTAAAAGAAAGGAGGAAGAGCAT 16952 36 100.0 30 .................................... TGCCTTGAGATAGACGATTTTCAATCGCTT 17018 36 100.0 30 .................................... TAGATCCAGGAAGTGCCATTGTCAAAACAC 17084 36 100.0 30 .................................... TAATAATTTTTTTGTAACGGTATCAGGGAC 17150 36 100.0 30 .................................... AGGGAAACTTAACAAATATTCAATCTGGTC 17216 36 100.0 30 .................................... TGTAAATGGTTGTTCCAGTATGTTGACCCT 17282 36 100.0 30 .................................... TAAGAATTTGTTCTATGATGTTCGAAATAC 17348 36 100.0 30 .................................... AGGGAATAAATACGGCCGTCTGACCGTTCT 17414 36 100.0 30 .................................... TTTACTGGATGGATTGGCGCTTGATGAAAA 17480 36 100.0 30 .................................... TTGAAACCATCCTCAGAGCCTTGGATGAAT 17546 36 100.0 30 .................................... TCCCTCTCTTCTACCCATTGGCCACTATCA 17612 36 100.0 30 .................................... CTATTTCGCAAAATCCAATACATTCATGGC 17678 36 100.0 30 .................................... CTGCTTAGCTTTGTCACTCAGCGCATTGTA 17744 36 100.0 30 .................................... CTCACAAAATTCCTTAAAACTCATGGCTTT 17810 36 100.0 30 .................................... TTTTGTCAGTGGATGACTGTACTTTGTTAG 17876 36 100.0 30 .................................... TTTTGTCAGTGGATGACTGTACTTTGTTAG 17942 36 100.0 30 .................................... TTTTGTCAGTGGATGACTGTACTTTGTTAG 18008 36 100.0 30 .................................... GTAAGATGATTGACGGGGTGTTTGTCAAAG 18074 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAACGACAAACCAGAAGTCAAATCCATGATTGAAAAGCTAGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGCTTAGAAAATGAACTAGACCTGGAATACGATGAAATTACTATCCTAGAGTTGATTGATGCGTTAGGAGTCAAAGTTGAAACTCTAAGTGATACGCCTTTTGAAAAGATGCTAGAAATTATCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTTTCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTCTTATTTGTCGAACCTCGAAAAGTCTTTGATTTCCCGCAGTATGTGCTGGATCAAGACTATTTCCTGAACCCCGAAAATATGGTATAATAAGGGTAACAATTGGAACCTAACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAACTTTTCTACGAG # Right flank : AAAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCCCCCTACACATAGGTCATTCCCTTATAGCAAAGGAAAACGGCTAGTGCGATAAAAAGTACGGTTGCCCCGATTCGCTGGCTAGTACTGTACATCCTTCTCTCCCATTTAACTGGGAAGATGACTGCTAGAAAGGAACCGCCTACTGCACCTCCGATATGCCCAGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGAATATAGGGGTTGCGAGTTGCGTAACGCAAAACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGATGCCCCAGCAGCGACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAAGAAGAACTGCTTAGAACCGAAAATTTCCTCCACTTGTCGTCCAAGAAAGTAGAGTGAAATCATATTGACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5249-5413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJFOV010000004.1 Streptococcus oralis strain MSK.15.92 LNBIKDDH_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================== ================== 5249 35 100.0 30 ................................... CCGCCTCCAGAAGATTGTCCACGTTTTGCT 5314 35 100.0 30 ................................... TTATTTGCTGCTGGGTATTCCTTGGATTCT 5379 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================== ================== 3 35 100.0 30 GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Left flank : GAACTGTCGTAAAGACAAATAACTTCTTCTTGGTTACAGGCATGCCAACCTGTCACTCGGATGAAGCCAAATAAAAAGGAGAAACATCATGGCAATCTCAAAAGAGAAAAAAAATGAAATCATCGCACAATATGCACGTCACGAAGGTGATACAGGTTCAGTAGAGGTTCAAGTTGCTGTCCTTACTTGGGAGATCAACCACCTCAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTCGGACTTCGTCGTTAATCTTGCGTCTAAAACGTTTCTATACTTCGTTGCCTTCGCCTCGATGTACCATCAGTACAATCTTCGGCTTGTCGCCTAGTCTATAAACGTTTTATCCAGCAAGACTTGAGCTCTCTGATATTCAGAGAGCTTTTTTATTGCG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTTCCTGAAGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCATAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //