Array 1 637-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZG01000029.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_2791 NODE_29_length_54247_cov_4.39545, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 636 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 575 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 514 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 453 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 392 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 331 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 270 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 209 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 148 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 87 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : A # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 126818-125321 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZG01000010.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_2791 NODE_10_length_143231_cov_4.7951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126817 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 126756 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 126695 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 126634 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 126573 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 126512 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 126451 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 126390 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 126329 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 126267 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 126205 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 126144 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 126083 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 126022 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 125961 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 125900 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 125839 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 125778 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 125716 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 125655 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 125594 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 125533 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 125472 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 125411 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 125350 29 93.1 0 A..............A............. | A [125323] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 143199-142988 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZG01000010.1 Salmonella enterica subsp. enterica serovar Thompson strain BCW_2791 NODE_10_length_143231_cov_4.7951, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 143198 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 143137 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 143076 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 143015 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAAACTGCACCGCCGCTGCCACTGAGTTTGC # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //