Array 1 51920-52356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWY010000012.1 Pantoea agglomerans strain Pa39-14 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51920 29 100.0 32 ............................. CCCCTTCTGTGTAGAGCCAGGGCGGTCCTGTT 51981 29 100.0 32 ............................. TCTGACAGCCGAGGGCCAGGACATAACCCGCA 52042 29 65.5 13 ..............TAGT.A.TGGC...T CTCTGCCAGCGGC Deletion [52084] 52084 29 100.0 32 ............................. TGACTGAACTCGCGGAACTGTCGGGATTTTCC 52145 29 100.0 32 ............................. GTGGGGTGTCGTTGGCATAATTGAGCAGCAGC 52206 29 100.0 32 ............................. GTTCGTGCAGTTCTCGACGGCAGAAAGACGCA 52267 29 86.2 32 ...C.......ACT............... TTAGAGGCAGTCTCTCGCAAGCTGGCCGCCGC 52328 29 79.3 0 .........A..CC.A....T.......T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 91.4 29 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : AGGGCATCAGCTACGAGACCTCCACCTTCCCGTGGGCAGCCTCAGGCCGTGCTATCGCTTCTGATTGTGCAGACGGTATGACCAAACTGATTTTCGACAAAGAGACGCACCGGATTATTGGTGGCGCGATTGTCGGTACTAACGGCGGCGAGCTGTTAGGCGAAATCGGTCTGGCGATTGAGATGGGTTGTGATGCGGAAGATATTGCGCTGACCATCCACGCTCACCCGACCCTGCATGAGTCAGTCGGTCTGGCGGCAGAAATCTTCGAAGGCAGCATCACCGATCTGCCTAACGCGAAAGCGAAGAAGAAATAAGTTTCTGCTATTAAAGGAAAAAGCTCCCGTTATGGGGGCTTTTTTTTCGCCTGGAGTTTGGTGCTGTACATGCCGGATTCTGTCCTGAATATTAAGTGTGCATTCAGGTTAAGTCAGGGTGTAAAATCTGGTGGAATTATCTAGCCTAGAAAAATTCAGTTTAATCAGCAACATAGTTTTAGA # Right flank : TAAATAAGCCAAATATCTGATCACTAAAAATTGATATAGCCTGATTATCACCCAGGAAAAATAACCCTAATTCCTCTTAAAATGTTGTCTTGCGGAGTTATTGGAGTTATCTTTATTTCATGGGAATGCGATAGGACACAGGGATGGAGAGCAGCAAGTTAATTGCAGAAATCAGGGCTGATGGCTGGATTTTGATCAGGGTAAACGGTAGCCATCACCATTTTACACATCCTACGAAACCGGGGCTGGTTACAGTACCCCATCCCAAAAAAGACTTACCGATCGGTACGGTAAAGAGCATCAGGAAACAAGCGAGGATTTAATTCCGCTTGCCCGGAGAGGTTTGAATATGTTTTATCCAATTGCAATTGAAGCTGGTGACCACGAACACGCATACGGCGTAACCGTTCCCGATTTGCCAGGGTGTTTCTCAGCTGGTAATACTCTGGATGAAGCCATCAAAAACGCAAAAGAGGCCATTACAGGGCATATCGAATTAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53438-54504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWY010000012.1 Pantoea agglomerans strain Pa39-14 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53438 29 100.0 32 ............................. ACGGCCCGCCCTTTATCACTCTGCGGGCACCG 53499 29 100.0 32 ............................. GCGTTAGAGGCTGGCTGGTTATATATCAATTA 53560 29 100.0 32 ............................. CTGGACGAAATGGATCCGCGAATGGATGATTA 53621 29 100.0 32 ............................. ATTGAAGCAAGCGCGATTGCCAGTAAAACACC 53682 29 100.0 32 ............................. GCTGATCGCGCTGTGCTGATAAAATTCTCTGT 53743 29 96.6 32 .....T....................... CCGTTGTGTAACGCGGGATGAGGACGACGGTA 53804 29 100.0 32 ............................. ACTTTCACGCCGGTCATTTCACCGTTGAGAAA 53865 29 100.0 32 ............................. CGCACATCATACACAACCGTAATCGAAACATT 53926 29 96.6 32 ............................C GCCAGATAGTCACCAAAGGCGCTGAAGTAGGC 53987 29 100.0 32 ............................. CGCATCCGCCGGAGATTTAATAAACGGCATGA 54048 29 100.0 32 ............................. CCCCGCACTGGCGGGGCTTTTTTCTATAACAT 54109 29 100.0 32 ............................. GCAGAACGCCACACGCCCGTTAGAACGAACCG 54170 29 100.0 33 ............................. GACGCAGGCGCAGCGGCAGCAGAGTGGCCATAT 54232 29 96.6 32 ....................T........ GCCCGGCAATTTCCGCCAGGCGCAGCGGTTGA 54293 29 96.6 32 ............T................ GGCGGTCACGATGGCGATCGGCAGACCTGCTA 54354 29 96.6 32 .....T....................... ACCTGGTCGTTACGCAACATGGGATACGTGAG 54415 29 100.0 32 ............................. CACTGTGATGTGCTCTCATACCTGTCACGCAG 54476 29 86.2 0 ..........T.TG...A........... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GGCGCTGGTTGAGATAGATGTCATTCGCTTGCTGGGCGGCTCTGAAAAAATCAATGTCACTTTACCCAGATCGTTAATTGATCGGATTGATCGTTGTGTGGCTTCACACCCGGAATACAAAAGTCGCTCGGGCTTTCTGGCTCAGGTAGCGCTTGAGCGTATTACTGCTCCGATTAACAGGCCTCAAAAGTAAGTCCGCGTGATAGCTAAATTTATTGGTGGTAGAAGAATCAAAAGGCACAGTTTATGAGTTTTTTACCCCTTAAGCCCCTGCCATGATCTTTCTCCAGTATGGTCAGGTTGATTTCTTTGATGATGCTTTTATCCAGATTGATAAAACCGGCGTAAGAACACATATTCCGGTGAATCTGGATGGACTGCGGCTGATTCCCTTTCTGACTCTTATAAATCAGTGAGTTACTGATCTTTTAAAAACCTGAATTTTTGGTGATTTTTTATGCGGGTAAAATCACCATATTTTACATCTACATACGTTTAGA # Right flank : GCATTGATGATGGAGGTGGTCAGACATCTGGCCTGTGATCCCCTACGAATGTGAATATCAGAGTCAGGCCCGATGAAAAAAAAGAACAGCACTCCCACACCTCACGATGCCACTTTCCGGCAGTTTCTCTCACAGCCGGACATTGCCCGCGACTTCATGGAACTGCATCTGCCCGCCGAACTGCGCGCTATATGCGACCTCAGTACCCTGAAGCTGGAATCCGGTTCGTTCGTTGAAGACGATCTTCGCCAGTATTTCAGCGATATCCTCTACAGCCTGAAGACCAGTAACGGGGATGGGTACATACACGTCCTGGTTGAGCATCAGTCTACGCCGGACAGGCATATGGCATTCAGGCTGATGCGATACGCTGTGGCGGCTATGCACCGCCACCTTGAAGCGGGCCATAAGCAGCTGCCGCTGGTTATACCGGTACTGTTCTATACCGGCAAACGCAGCCCTTATCCGTATTCAACACGCTGGCTCGACGAATTTGAAGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 64740-67027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSWY010000012.1 Pantoea agglomerans strain Pa39-14 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 64740 29 100.0 32 ............................. CGCGTGTCGCCGTCGAGTGTCGGCTTGTCCGA 64801 29 100.0 32 ............................. ATGGGTTCTTCGTTTTCAGTTGCCGGGGTGTT 64862 29 100.0 32 ............................. CTCCGGCACATATCAGCATCACGCAGCACACG 64923 29 96.6 32 ............................A GCACATGCATCCCTATAGCTGATGGGTTCAAT 64984 29 100.0 32 ............................. CCAGCCAATCGCCACGGCCAGCTGCGCGCCTC 65045 29 100.0 32 ............................. AAAACACCGATTTAGAAACAGCAATTAACGAC 65106 29 96.6 33 ............................A GGGGGGGTGTAGGGGGGGGTATGCTCAGATCGG 65168 29 100.0 32 ............................. ATTCTATTCAGGATGCCATGTTGCCCTATGTC 65229 29 100.0 32 ............................. CACCCACAGGCGATCACCTTTCAAACCGAACG 65290 29 100.0 32 ............................. TTTATACGGACGGCGATATTAACGATGAACTC 65351 29 100.0 32 ............................. ACGATTTTACGCGCCTCAGAATCATTTCCAGT 65412 29 100.0 32 ............................. CAAATCATGCTGGCGACGTATGGCGAGCTATT 65473 29 100.0 32 ............................. TTGCGACGGGAGACGGGGTATTTTTACGGCGC 65534 29 100.0 32 ............................. CGCCGGCACATATCAGCATCACGCAGCACACG 65595 29 100.0 32 ............................. CCAGATGCAATAGGGGCCGTCCTCGGTATCGT 65656 29 100.0 32 ............................. GGCAGCAGGTCACAGTGCCGCGTATGTCACGC 65717 29 100.0 32 ............................. CTCGTTGGATTCTCCGGACGGCGGATACATGA 65778 29 100.0 32 ............................. TTTTCTGTGCTTCAGAAAAGTGAAAGCGCCGG 65839 29 100.0 32 ............................. GCTTGAGATGTCCTGATGGTTTGCCCCCATAG 65900 29 100.0 32 ............................. GGAGCTGTAGCCCTGGGGACGTATGCCAGCGC 65961 29 100.0 32 ............................. CTGGAGGCTGATGGCTGGCTGAACAGTACGCC 66022 29 100.0 32 ............................. GCCGGGAGTAATGTCGAAATAGCCAGGCGGCG 66083 29 100.0 32 ............................. GATCAATCATGGCCGTCAATATTGCATCAATT 66144 29 100.0 32 ............................. GCCTGTTCAAATTATGCACGATTACGCGTGGG 66205 29 100.0 32 ............................. GATGGTGAGTGATGGTTACGCCAGAAAAATTC 66266 29 100.0 32 ............................. TAAAGAGTTAGTAGTGAACTAGCAGCAGCAAG 66327 29 100.0 32 ............................. CAGCCAGACGTTTTTATCCTCTACCCCAACAC 66388 29 100.0 32 ............................. TTGCGGTGAAATCCCCGTCATCGTCATCCCTC 66449 29 96.6 32 ....C........................ TTCAGTTTTAACGGGTTGAGGTGCTTCAGGTT 66510 29 100.0 32 ............................. CTAACGAATATTTAACCTAAATCAATCCAGTT 66571 29 100.0 32 ............................. CACCCAGTGACGATGTAGCAAGAAAGCACCTC 66632 29 100.0 32 ............................. AAATTCAACCGGGAGAAATCCACCGCAGCGCG 66693 29 96.6 32 .............T............... ACGGTGATCTGCTTGTAATGCCACGTAAAAAA 66754 29 96.6 32 .......T..................... GCGGCGATGGGTGAGGATATGGCCGCGACAGA 66815 29 100.0 32 ............................. TTGCAACGCTGTTGTAGTGCGGCTCTTCCTGG 66876 29 96.6 32 ..........T.................. CACAGCTGGAGATGATCGGGCAGGAAATCGGC 66937 29 96.6 32 .............T............... CCGTGGTGTTGGCGTTCTGCTGTGACATGTTG 66998 29 86.2 0 ......A..A......A.......C.... | A [67019] ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTAATTGAGGATGTGCTTTCTGCTGGTGGTATTACACCTCCACCACCACCTAAGGACGCTCAGCCGATTGCAATCCCTGAACCTGCCCCTTTTGGTGATGCCGGACACCGGAGTGCGTGATCATGAGCATGTTGATGGTCGTCACTGAGAATGTACCCCCCAGGCTAAGGGGCCGGCTAGCTATCTGGTTACTTGAGGTCCGCGCCGGGGTTTATGTTGGTGATGTATCTCGTCGTAGCAGAGAGATGATCTGGCAACAGATTAGCAGGCTATCCGAAACGGGCAATGTCGTAATGGCATGGGCGAGTAATAATGAATCTGGTTTTGAGTTTCAGACTTTAGGTGACAATCGGCGTTTGCCGGTGGAGATGGACGGTATCCGGTTAGTCTCTTTCCGACCTGTTGATAATCAATGAGTTAGCGATCTTTAAAAAATCAGATATTTTGGTAGAATTGGCAGTGGCAAAAAAACTGTTATAATTCAGTTGGCTACGTTTAGA # Right flank : GGCAGTTCCCCGCCGATATTATTTTCCAATGCCCGGTCTATCCTTCACAAACCACGACTAACCCTTCATCTAACCACGCATCTCCCATGCAGCCACTCGTTCAATAAACATTTGTGCCAGGGCAGTAATGGCGCTGTTGCCGGGTAGTCTCTCTTCATTGATATACATCACCAGCGAACTACTGCGTCGGCGGCCCTGCAGCAGCGGCAGGGGACGGAGCTCACCGCTCTCTAACAGCGCTGCGATATTCTGTTCCGGCAGCCAGCCATAACCTAACTGATGCTGGACCGCTTCAATGGCTGCCGACAGCGTCGTGAATGACCAGTTCTCCGCCTGATCGCCATTGACCTCTGACTGCTGCTGCTGCTGACGATCCAGAATGGTAATGCAGGGCCAGCGTGCCAGCGTAGCAGCATTAAGCGGGGCGGATTCGCGGTGCAGCGGGTGGTCGCGATGGGCGACGGCGACGAAATCGACACTCATCAGGCTTTCGCCTGCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //