Array 1 1084911-1087685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084768.1 Klebsiella quasivariicola strain 08A119 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1084911 29 100.0 32 ............................. CCCCCAGGGTGTCGCATCGTTTGCACTTGTAG 1084972 29 100.0 32 ............................. TATCTGGCGACCTGCCGCACCGAAGAGGGGCG 1085033 29 100.0 32 ............................. GTGGTGCATCCAGAACGGTAGCCAATTCTGTG 1085094 29 100.0 32 ............................. GATGTTGGTCACGGTGTTAGCCCTCTTTACGT 1085155 29 100.0 32 ............................. TGGGAAACGTTTCAGGAATCGTTGTAAACCAC 1085216 29 100.0 32 ............................. ATGTACGTTACTATCAGGATGACGTTTAAAAT 1085277 29 100.0 32 ............................. CATTATGAATCGCTCAATACTTTCTTCACTAT 1085338 29 100.0 32 ............................. AATTATTTTAAACTTCTTGCGTAATTCGTACA 1085399 29 100.0 32 ............................. TTCTATGTGTTGAATTGCTTGTTTACCTGTTT 1085460 29 100.0 32 ............................. AGCCGGGAATAATTCATTACTGATCGCCAGGT 1085521 29 100.0 32 ............................. CCATTTTTCGTATGATTTAGTTCTCAATGTTT 1085582 29 100.0 32 ............................. TCAGAATTGATTAAAACAGATGGTGTTAAAGT 1085643 29 100.0 32 ............................. TTGTCAACTTCACGCCAGTAGTCTTTAGAGAT 1085704 29 100.0 32 ............................. CAAATATTGCTGTGCATCGCGGGAGACAAAAC 1085765 29 100.0 32 ............................. CAGCATTGCTCAAACAGCAGGCAGAGTATAAA 1085826 29 100.0 32 ............................. GTTGCGGTCTGCTGGCGTCGATACCGGGTGAG 1085887 29 100.0 32 ............................. AGTTTTTCAGTTTCATTCGCTGTGGTTTCGAC 1085948 29 100.0 32 ............................. TAATCGAAATCGGTGTTTTTTGGTATGACCAT 1086009 29 100.0 32 ............................. GCCGAGATGTCAGCCGACTCATGGCCTTATAT 1086070 29 100.0 32 ............................. CGCACTCAGCAGATAGTTGGTGAGATTAATGG 1086131 29 100.0 32 ............................. GATAATGACTGACAATATCTTACCCGCTACCG 1086192 29 100.0 32 ............................. CGTACCGCGCATGACCTGCGCCGCGTGGCAAA 1086253 29 100.0 32 ............................. AGCAGCACGAAATACGCATGCGAGCTATGCGT 1086314 29 100.0 32 ............................. CCAGTCCTCGCCAGTCTGCGCCGTTTTCAGGG 1086375 29 100.0 32 ............................. GCACGCCGTAACGCGCGCTGTGGGTAATGTGA 1086436 29 100.0 32 ............................. TCGTGTTATATCGCCCTACCAGTAGCACAAGT 1086497 29 100.0 32 ............................. AGGTATTTGATGATTTGTAATCTGCTGCATAT 1086558 29 100.0 32 ............................. CGGTTATTCTCCACGTTAGTGAACTGGAGCCA 1086619 29 100.0 32 ............................. TTAATGCTTCCGGGGAGGTGGTAGCCAACGTC 1086680 29 100.0 32 ............................. CACGGTATATGCGATCGCGATATTTAATCGCG 1086741 29 100.0 32 ............................. ATCATCAATTTCGGCCAGAATGGTATCGACGA 1086802 29 100.0 32 ............................. CATCACGGGTGAAATGTGCTTACCGATACCAA 1086863 29 96.6 32 ........T.................... GATGTTTCTGTCGGGGTCGATCCGGTTAAGGC 1086924 29 100.0 33 ............................. GATTTCACTCTGAGCGCCATTCCCCTGGAATGC 1086986 29 100.0 32 ............................. CGCAGTAACGAAGTCGCGGGTGTGAAGGTACT 1087047 29 100.0 32 ............................. TCCGAAGACCTTCAGAGCGCCGGACAGGAGTT 1087108 29 100.0 32 ............................. TCTTTTTTCAGGCACATATCCGGTAAATTAGC 1087169 29 100.0 32 ............................. CCAGTTTATTGCTATCTCCAGCCATTAAAAAT 1087230 29 100.0 32 ............................. TGGGGGTAACTGGTGTCAGGCTGGGGGCGCGG 1087291 29 100.0 32 ............................. TATATATGGGCATGAAATAGTTGCAGGAAATA 1087352 29 100.0 32 ............................. GTCAGGCGTGAGTAAAGGATTTTCCTCGCCTC 1087413 29 96.6 32 ................T............ TGGAAAGACATTAAGAGAGGGGGAATTAAAGA 1087474 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 1087535 29 100.0 32 ............................. GAGGGCGCGGAGGGTAACGTCTACGTGCTGCG 1087596 29 100.0 32 ............................. GCGGTTGCCCTGATGGTATGGCGGCTGTGTAG 1087657 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGTTGTCGGCAGGCGAAATCGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATCCCTGAGCCTGAATCAATGGGGGATAGCGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTCCCTCCTCGTCTGCGGGGGCGGCTCGCCATCTGGCTGCTGGAGGTTCGAGCGGGAGTCTACGTTGGCGATACCTCAAAGCGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGTGAATCAGGTTTCGAGTTCCAAACTTGGGGTGAGAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTTCTTCCCATTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGGAATAAAGTTGGTGGATTGTTGTCGCCTCAAAAAGGCATTAAAAAACAGTAATATATGTTTAGT # Right flank : GGGGTTCACTTGGGTGAAACTGAACCAACTGTGCCCGCATTCGCTGGGATAAGCCCGTCACTAATGTTATCGATCCTGAGGGTGGGTACGAAAGCTTGCGGAAAATAAGTGTTGCTACCTGCCGCTCTTTAGCAGAATGCCCCCTTAATTAGCCGATATCACTGCTTTTTCACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGTATGGGGCGCCGTATTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGTCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATCATCTTCAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2278319-2278649 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084768.1 Klebsiella quasivariicola strain 08A119 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2278319 28 100.0 33 ............................ TGGGTTTTCGTTCGAGTTTAGCGCCTGCAGGCG 2278380 28 100.0 33 ............................ TCGAATGGGAAAACCTGTTCGCTTTTTTATCAG 2278441 28 100.0 33 ............................ TGGGATTCAGCCTGGGTTCTCTCTTGATGTGAG 2278502 28 96.4 33 ..........T................. TCATGTAACTTTCAGTGCGCACCTTCTTTCATG 2278563 27 92.9 33 .............A...-.......... TCTCGTGATGGTCTATGACGTCGCCGTCGGTGG 2278623 27 82.1 0 ............C.T..-....C.A... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : GTCAGCGTCGGCCAACCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTGGACGGCGCAGCGCAGGATAACAGTCTCCAGCTCCCGCTGCTGACCAGCATGTATCTTGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGTGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTGCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCCGGGAATGACAAAAGTGTTTTGCGCCTGGCTGCGGCCCGGGGAGGCGAGTAGGGTAGACCGGTCCTGGTCAGCAGCAAGTCAACGGTGGTGAGATGGGGACTTACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAACCCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CAACAAAGCTGGTCAACCGTTGTTATCGTTATCTTGGTTTAGTTTGGCAAACACAGTTTAATATATTTTTCATGTGAATTTAAAATTCATATTCATGTGTTATATTTATTTTTTATTTCGCAATGGTTGTTAAGTCCATTTTTCTGGCGCACCTGAAGTATGATTATTCATACTACTTATTTATAATGTCTGATATTGTCGATTTGATGTCTCACATTAAGCGCAGCGTTTGTGAGTGCTTTTTATTTTATAAAAAATTATTTATAAAGCTTCCTGACTTTAGTATTAATAAAACGCACATGTTTTATTAAGGATGATTTTCATGAGGCGCTTAACCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGCCCGGCGAAAACCCGGATGTTGAGTGATGGTCGCGTGGTGCAGGGACGCTCGGTATTGAGTCATTGTCAGATTGTCGGGGAGATTGCCCGGGCGCTTATAGCGCTGTATC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3226735-3225548 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084768.1 Klebsiella quasivariicola strain 08A119 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3226734 28 100.0 33 ............................ CGGGTGAACTCCCCCCGCAGGTGGAGGTGTTTG 3226673 28 100.0 33 ............................ CTCCCCCCGCAGGTGGAGGTGTTTGGGCAGCTT 3226612 28 100.0 33 ............................ TTTGCTGGTCCGCAGCGCGGTCGCGGTTGGGGG 3226551 28 100.0 33 ............................ CTTTTGATCTTCGCACCATTTTTCAACGGCTTT 3226490 28 100.0 33 ............................ TAACCCCGGTTTGATCCAGTTTTTCAACCAGCC 3226429 28 100.0 33 ............................ CAGACCTCTTCGTCCACCTCGACCGCCCTACAG 3226368 28 100.0 33 ............................ TATCGCCCGGGCTCGCAGGCGCAGGACTATATC 3226307 28 100.0 33 ............................ TACCAGTTACAGAAAGGGGATTGCCTCGAAGTT 3226246 28 100.0 33 ............................ TATATTGGCTATATCCCGATTTATACAGGCATG 3226185 28 100.0 33 ............................ TCTGAGCTGGTGGCCATTAATGCTGGAGCTGTA 3226124 28 100.0 33 ............................ TAGATAACGACCCGGACGACTTCCGGCGGCGGC 3226063 28 100.0 33 ............................ CAGATCCCACCAGATTTCCCGCAGCTCACTAAG 3226002 28 100.0 33 ............................ TGTGGATTCATATGCTTTAGCAGGATATGCGCA 3225941 28 100.0 33 ............................ CATCAGCAGAGAACCCGAGCGTAGACAGGCATT 3225880 28 100.0 33 ............................ TATTGTTCGCGGCAAGTGTCATACGACCTGGTA 3225819 28 100.0 33 ............................ TCATCCTTAACGGGTCGATGATTGAGCCTGTGA 3225758 28 100.0 33 ............................ CCAGCCATCGGCAAAGCATATCGCGCGACCGTG 3225697 28 100.0 33 ............................ CTCGCGCGCCGCTGCGGGCTGATCACGGCCAGC 3225636 28 100.0 33 ............................ CAAAGAGGGGATCTGTTACGAGCTGCGCGACTA 3225575 28 71.4 0 ........T.....T......C.TAGCA | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.6 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : GAAAATTTGTCAGCATACTTCCGCTATCCAACTGATATCCGTAAGGTCATTTACACCACGAATGCGATTGAATCGGTGCATCGTCAGTTCAGGAAACTGACCAAAACCAAAGGCGCTTTCCCGAATGAAAACAGCCTGTTGAAGCTGCTTTATCTGGGGCTGATGAATGCACAGGAGAAATGGACAATGCCCATCCAGAGCTGGAATTTGACATTGTCGCAGTTAGCCATTTATTTTGAAGGACGGCTGAATAAAGTGATGACGCTGTAGAATTTTTAACATGACACAGAATTCTGAACGCTCTCGTACACGCCTGTGGAATCGGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGAACTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAATTCTCGCTCTTTCACAATATGTTGGT # Right flank : ATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATGATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAGTATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACCGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGGCTTTACCAGTCACATGATTTAATACGCCAGTTAAAACCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGTGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAATTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTACGATGAGGTAGAGCACAGGCTACAAATTGGCTGGCTTGTTGGTCTGGATATCTCCAGGTGTTGGAGCAGTGACAGAAATCCATTTTACATCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //