Array 1 87799-88232 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEY01000013.1 Salinivibrio sp. ML290 scaffold13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 87799 28 100.0 32 ............................ GTCAGGCTCACGCTCCACCCGCTGAGGCTCAC 87859 28 100.0 32 ............................ TATAACGCTATGGTCAGCGCGGCGGTACTCAA 87919 28 100.0 32 ............................ ATTCGAGCACCGTTTCTGTTTTGATGTGTTCA 87979 28 100.0 32 ............................ TATCGCAATTTGATGCGCTATCCGCATCACGT 88039 28 85.7 137 .....................G...GTG ACACAAGCCCCGGCACGGTGTTGGATATGTACGAATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTTAATGTCGGAGGCGCGCAGTCCGCTTGGGTAATAGATGACTGACATTGCACTGGCGCTT 88204 28 71.4 0 ..C...CTA............G...GTG | G [88208] ========== ====== ====== ====== ============================ ========================================================================================================================================= ================== 6 28 92.9 53 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACTTATTGTCAATATGGTCACTTTTTGGCGGCTTTAAGCTTGTATTGTGTCTTACAATGGCTACGCATCACGCTCCTGGAACGCAGGGCTGTGTGCTTGGTTTTGCGACCACGTGTACGCGCACGCCATACTTTGAAACTACGCGGTTTTAATTCACGTCGCATTAAAGCAATCACATCATCTTGGCGTAGCCCATAGAGTGCTTCAATCGCCTCAAACGGGGTCCTATCTTCCCACGCCATTTCAATGATCCGGTCTACGTCACCAGGTTCAGTCAGTCGCATAGTCTCCTCCTCGCATTGGACTAATAATTACGTATACGTTGAGCAACGCGGATCAATAAGTGGGGATGCCTAAATCCCTTATGACCCTTATTTTTTGGATATTTAAAAATAAACAATAAATACAGCTAGTTAAGAAAGGCCATTTTAAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGAGGCGCGCAGTCCGCTTGGGTAATAGATGGCTGACATTGCACTGGCGCTTGTCCGACCTACGCATAGGCAGCGTAGGTGACACAAGCGCCGGTACGGTGTTGGATAGATAAAAACTGTCAACGGGCGCCTGGCTCGATTGGCGCTTATATCAAACGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATATGTTGTAATTCCTTAAATGACAACTAATATGTTGTATATAGGCTGTAGTACAACATTAAAGTTGTTTGAGGGTGTGATGGTGTCACTAAAAGATATCGCGCGTGCATTGCAAGCGCGTCGCAAGTCACTTGGACTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTACCAGCGAGTAGAGGCGGGGAGT # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-2.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 90322-91189 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEY01000013.1 Salinivibrio sp. ML290 scaffold13.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90322 28 100.0 32 ............................ ACTCAAGCGGCGCATAGTCCATTGCGCCTGTT 90382 28 100.0 32 ............................ CATCGGCGTGATGGTGGAAAGCGTCTTGATGT 90442 28 100.0 32 ............................ TACGGGCGACTGATGATATTGATGATTATTAT 90502 28 100.0 32 ............................ TAGCCCGTTGTTTTTCGGCGTTAGCTCGAGTG 90562 28 100.0 32 ............................ AAGCCCGAACCTGACCAACACGCACTTGCACG 90622 28 100.0 32 ............................ TGTCACGAATCGCCGCTGCATCACTTTGTAGC 90682 28 100.0 32 ............................ ACAAAATATGGTTGCTCTTATGTTGACCCATA 90742 28 100.0 32 ............................ AGACTATGGATACCACACTTGAATTCTCTGAC 90802 28 100.0 32 ............................ TCAGCAGGTGTTGCCGGTGTTGGCGTATATGC 90862 28 100.0 32 ............................ CATCGCAACCGGAACTCTATAAGATGATAACC 90922 28 100.0 32 ............................ TTGGCGTGGCCATTTCCGGCGTCAATGACTCG 90982 28 96.4 32 .............C.............. ACACTGGTCTGGATTATGACATACAAAGGTCT 91042 28 92.9 32 .............C...T.......... TCATCGCGCTCAGACTTGGCCATGTGCCGTTT 91102 28 96.4 32 .............C.............. ATAAACATGGAAAGCAGCGAACAAAGCAGAAT 91162 28 82.1 0 .............C.......G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGGACGATCTGTTACCCCGATCGCATGTTGCCGCGTCTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGCAAGCGTTGGTATGATATTGGTTTGAGCCATTTCGAACGCTGGTCGCAAGATGTGGGTGTGCCGTGGCAAATGATCAAACCGCACCTATTGGATACGATCAACCTGGCGCGAAATATGTGGCCAAATCAACTTAAGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTCACCATCGGTTCATGATCCAGCCAAACCGGGCGCTAAATCGGCGCCTTCTTACCCTTATTTTTTGGCTATTTAAAAATAAACAATAAATACAGATAGTTACGGAATCCCCTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGATTATTAAGTTATTCTATT # Right flank : GACACAAGCCCCAACACTATGTTGGATAGGGGAATTGCCAACGGACGCCTGTCACGATCGAGGTTAATCGTTGGCGCCGATGTCGGATGACGCGCGGCGTAAATCACACCAAGCTTGTACGATCGAGTTGGCGCTTATGCCGACCTACGCACAGGCAGCTTAGATACTGAAATAGTTGCTTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATCGAGGAAGTAGGGAGGGGATGGTTCAATATCGACAAAAGCGTATGACTAGCAATGACCATACACGTCAATTTGACGCATGTTTATAGCCAAAGTTAAGCTTGCAATTGCATGCTTTTGCATAGCTAAGCAGGGTTTTAAGGGTTGGATTACCTTTCCCTTTTTCAAGTCGAGAAATATTGCCTTCTTTCGTCCCCATACGTTCTGCAACCTGCTGTTGAGTTAGCCCGGCCTGCTTACGCATACTGAGTAACATATCGATCAACTCAAACTCAGGCGTCAAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //