Array 1 2027-3031 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQB01000104.1 Leptospira weilii strain 56674 Contig104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2027 29 100.0 32 ............................. CAAAACAGGAAAGCCTACAATCTCCTTATCAT 2088 29 100.0 32 ............................. AAACATCGCAATAAGTGATGAAATGATTGATC 2149 29 100.0 32 ............................. CAAAACACGAGAACGACATTTATCTTCATGAA 2210 29 100.0 31 ............................. TAAAATATCTTCGATTTCGGATGGGACTTTT 2270 29 100.0 32 ............................. CGCCAAAGCTTTAGTTACAGAACTAAAAAAAC 2331 29 96.6 32 ............................A AAGGTCTTTCCTTCAACAGATATTGTACAAAA 2392 29 96.6 32 ............................A GCGAGAGGAAGGCTTTCCCTTTCCCGCCTGAA 2453 29 100.0 32 ............................. TTCCCAGAGAAAGGTTCATTCGGCCTGGATCA 2514 29 100.0 32 ............................. AGATTTCCGCCCGCGAATCAGAAATCTTATCC 2575 29 100.0 32 ............................. ATCACAAACAATCCTACGTTAAAGGAAATTGC 2636 29 100.0 31 ............................. ACTTCCTGCGAGGAACACACGATCGACATCC 2696 29 100.0 32 ............................. TCCGAAAGATTTTGTGGAATCATCTCGGTCTT 2757 29 100.0 33 ............................. GAAAAATCCCCTTCCTTTAACGTTTCCGCGGAG 2819 29 100.0 32 ............................. TTCTTCAACAACCAATTGTCTGTTTTAAAGCC 2880 29 100.0 32 ............................. TAATCTTTTTTTACCTGCATCTGATAAACGAT 2941 29 100.0 32 ............................. ATTAGATTTGTTTGTAATAACTTGCGCTTTGC 3002 29 79.3 0 .....................GG..CATA | T [3022] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.4 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : CAAATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCCGTGAAACGATCGGCCCCACAACGCGCCCCTTAGGAAGCGTTGTGTTGAGTTCCTTCAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGAAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCGAGCGTTGTGCCTGAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGGGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : ACAGAAAGATCCAGCGTATTTATCCAGATGCGAAAAAACTCGTGCAACCTCGGATTGCCGCTTTGGAAAAAGAATGGTTTTTGGAATTGAAAAAGTTGGAAAAAAATTCAAATCCCGCTCAGGCATTGGATCTTTTAAGTGAAAGAGCCGTTAAACGGCTCTACAAGAATATAGGTTTTGGGATGAGAATTTGTTAACCGAACTGAGAAAAAATCGACCCAAAAAAACATTCGCGCCCTTCTATAGACTGCAGTGGACTTACTGAAATCGAAAAGCGGGCGTCATTGTCACTTAGCGTTTGCCTTGCGAATTCTCATATTGATCAATTCCACACCAAGTGAAAAGGCCATGGAAAAATACACGTATCCTTTCGGAATGTGAAAGTGAAGTCCGTCCGCAAATAACATCGCGCCTATCATGATCAGAAATGAAAGCGCCAAAACTTTCATCGTAGGATGTTCGTTGATGAAATCGCTGACCGTTCCGGAAAAAACAAGCAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25743-26013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQB01000166.1 Leptospira weilii strain 56674 Contig166, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25743 29 100.0 32 ............................. GAGCGGGAAGCGATGCGTCTTAACGGAGAGCT 25804 29 100.0 32 ............................. ATGATCCTGGTAACGAGTTAAAGCGGCCGCGT 25865 29 100.0 31 ............................. GAGCAGTTATTTTACTTTTTATTCATAGTGA 25925 29 100.0 31 ............................. ACATTGCCGCCCTGGGGATGGTTTATTTTAA 25985 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAATCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATTGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22183-20691 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQQB01000062.1 Leptospira weilii strain 56674 Contig062, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22182 29 100.0 32 ............................. CATCTGATTTAATTAAATCAATCGGTGGACCT 22121 29 96.6 33 ............................A GATGGGCCTTTGTCAGGTTTTAAACCACACTGA 22059 29 100.0 31 ............................. TATTAGAATGGAAACGGAATTTACATACGAC 21999 29 100.0 31 ............................. TATTAGAATGGAAACGGAATTTACATACGAC 21939 29 100.0 32 ............................. TTGCAACAAACCGTCTGAGATTTTCCAGTTTT 21878 29 100.0 32 ............................. TATCCCGGTGACTTAGGGTTAAATCAATGAAA 21817 29 100.0 32 ............................. CGCGCGTGCGGTGCTTGGAGTCGGGAGCATCG 21756 29 100.0 32 ............................. AAGAAGGTCAAGCCTTAACTTTTACCATTCAT 21695 29 100.0 32 ............................. GAGAAGCCAAGCTCGCGACTCTGCTAACCGCG 21634 29 100.0 32 ............................. AAAGTGCAAAGCTAAACGAAGAAAGAACGAAA 21573 29 100.0 32 ............................. AGATCGAACGCACTCCCCAGGAAGATGAGCAC 21512 29 100.0 32 ............................. GCTGAAGGATCGGCCCTATGGAAACATGTCCA 21451 29 100.0 32 ............................. TTTTTTCCCTTCCGTGTTCCACATAGCGAGCC 21390 29 100.0 32 ............................. ACGTGAAACGAGTTCCGATTTTCCATGCCTTG 21329 29 100.0 32 ............................. ATACAAAAGGTTTCGAGTGGTTTCTAAACCTC 21268 29 100.0 32 ............................. GAAGCAAAATGAATACAATCAAAAATTGGTTA 21207 29 100.0 32 ............................. TAGCTAACAAAGCACGAATTAAAAGTGTCTTA 21146 29 100.0 32 ............................. TGGAGACTTTGACGATACTATAGAACAGATCA 21085 29 79.3 32 .....................ACTTTT.. GGATGTGATCTTGTCTTCCATCGTAAGTCTCT 21024 29 79.3 32 .....................ACTTTT.. CGGTTTGGCCGATTTTTGGGAAGGTCGATAAA 20963 29 79.3 32 .....................ACTTTT.. ATACATTGAAAAGAACTTAGACAGCGATTCGG 20902 29 79.3 32 .....................ACTTTT.. TAAAGCCCATCTACAAAAATGCAAAAACAGAA 20841 29 79.3 32 .....................ACTTTT.. CGATCACCGCGCTGAACCGAGTCATAGAACTC 20780 29 100.0 32 ............................. AGATAGAAAGAGAATATCGCGACCGGAAAAAA 20719 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 25 29 94.9 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAACTTCTGGTAAAGTCCAGGAAATCCATGACTCAGATCTCAAAAGATTTGGGAGTCTCTGTGAATACCTTGATAAATTGGAAGAAGAGGTATCTGACGGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAG # Right flank : TTCAGTCAAAACAAATAAAGGCGAAATAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAACTTTCAACGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGAGGTATAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATTAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAGCTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //