Array 1 1628-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATP01000030.1 Streptococcus sp. CM7 ctg7180000005103_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1627 36 100.0 30 .................................... TTTTTATTTGTCTATTACTAATCGTGGAGA 1561 36 100.0 29 .................................... CTCGCCTATCGCATTCTTGATTGAGTGTT 1496 36 100.0 30 .................................... CTCAACTCAACTCTTCTATTCTGTCGTTGC 1430 36 100.0 30 .................................... TGATTTGGAAATCTTAGCAAAAATAGAAAG 1364 36 100.0 30 .................................... TTTACAGGCGGGTGTATTTAGTTATTATAC 1298 36 100.0 30 .................................... ATGACATACTACATTTCAGACTGTTATCTG 1232 36 100.0 30 .................................... TGTTACTGGAATGAGACTAGGCGAAAGCCT 1166 36 100.0 30 .................................... AGGTAGTGGAGATAAGTTTACTGTATCTAA 1100 36 100.0 30 .................................... ATGATAAAAAACGTAGTCGATTTAAAGATT 1034 36 100.0 30 .................................... AAGATAAAGAACTAAAAAAAGCTATGAATT 968 36 100.0 30 .................................... CGCGCTTTTTTGATATAATCATCTCAAAGG 902 36 100.0 30 .................................... TATCCAGATGGTACGACTGTAGAATTTAGC 836 36 100.0 30 .................................... TCCGCGCTGTTCTAAGAATCGAATTTGTTT 770 36 100.0 30 .................................... ACCATGCTATTCCAAGCATTTTGTGCACCT 704 36 100.0 30 .................................... TTAGCCTGATTGAGCTTTTCCTCACCTTTA 638 36 100.0 30 .................................... TATAATAGTGTTGTGAAATTTATAACTAAA 572 36 100.0 30 .................................... TGATTTCCAAAGAGCAAATTGCTCACGATT 506 36 100.0 30 .................................... ATTGTGACACCGAAAGCAAATGCCGTCTAT 440 36 100.0 30 .................................... AAACGAATTACCACCAATTTCTAGTTTTCT 374 36 100.0 30 .................................... ATTCCCGTTTCCTAAACCGCTAAATAGTGA 308 36 100.0 30 .................................... TAAACTGCTGTGATATTCAGTATCTTCGTT 242 36 100.0 30 .................................... TAGTTAGAAAAGGTTAACGTGTTATTGTTT 176 36 100.0 30 .................................... CTATTATCAATTTCCGAGAGCAGATAGCCT 110 36 100.0 30 .................................... ATGACATACTACATTTCAGACTGTTATCTG 44 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCCGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTAAGTGACACTGTTTTTGAGAAAAGTTTAGAGATTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATATGTCATGTTATCTGTCTGAACATGAACTAGCTAAATTGGTAGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : CTTTACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 319644-318948 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATP01000008.1 Streptococcus sp. CM7 ctg7180000005102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 319643 36 100.0 30 .................................... TCACGAAACAACCTGCAGACAAAATAGAAA 319577 36 100.0 30 .................................... AGCACGACCGCATGGAACGACAACGGAAAT 319511 36 100.0 30 .................................... TAACAGCTGCAACCATCAAAGAAGATAAGC 319445 36 100.0 30 .................................... ATCTTATTTGCTAGATTCCATTTACTACCT 319379 36 100.0 30 .................................... CACAAGGTAGCTTAAAACGTAGGCATTGGT 319313 36 100.0 30 .................................... ATGAAATGTATTATGAATTTTATTGAGCAT 319247 36 100.0 30 .................................... GACTGCGATTGAGATGCTTGTTCTAGCTGT 319181 36 100.0 30 .................................... AATACTCGGTTTGCGCGTGGGGAATACATA 319115 36 100.0 30 .................................... ACAAGCGATTGAATCGATTCTCTTAATTTA 319049 36 100.0 30 .................................... TGCCGGCCAACTTTACAAATACAGTTAATG 318983 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AGCTTCTATTGAAATGTGCGAATGTGTTATAAACTGTCAGACATAACAAATACAGGCCAACTCAAAGACGTAGC # Right flank : ACAATACATTTTAATCATAGGGCTTGCAAATTTTTCCAATCGTGTTATAATACTTTTTAGAGACATATCACCTACAGGAAATCTTTCAGAGAGCGTGTGGAGCTGGGAATCACGCAGAGGATGTAGCTGGGACTACTCGATTTATTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTAGGATTGCCGCTTTTTATTTTGTCGGAAGGAGGAAGAGTTATGCTCTATATGATTGGTGGATCGCCTTGCAGTGGGAAGTCAACAATTGCCTCCCTTCTTACTCAGCAGTATGGGCTGCTTCATATCAAGTTAGATGATTTGACAGACCAGATGATGGATCAAGCAAGAGCGAACGCAAAGCCGATTTCCCTTCTGAGACAGGACAGAAGTCCGGATCAAATCTGGCTGAGACATCCAGAGGAGATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //