Array 1 5535-6660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYY01000017.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM N41747 N41747_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5535 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 5596 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 5657 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 5718 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 5779 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 5840 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 5901 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 5962 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 6023 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 6084 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 6145 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 6206 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 6267 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 6328 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 6389 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 6450 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 6511 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6572 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6633 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22919-24780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYYY01000017.1 Salmonella enterica subsp. enterica serovar Braenderup strain CVM N41747 N41747_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22919 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 22980 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 23041 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 23102 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 23164 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 23225 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 23286 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 23347 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 23408 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 23469 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 23530 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 23591 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 23652 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 23713 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 23774 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 23835 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 23897 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 23958 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 24020 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 24081 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 24142 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 24203 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 24264 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 24325 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 24386 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 24447 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 24508 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 24569 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 24630 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 24691 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 24752 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CATTCGCTCAATAGCGGCCCGCGTGGCGGTGAGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //