Array 1 3535-4763 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCS01000110.1 Vibrio cholerae strain EDC_688 734_Vc_EDC_688_contigs_EDC688_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3535 28 100.0 32 ............................ TTTCAAGCGGTCGCTGAATTGTGGATGGACAC 3595 28 100.0 32 ............................ TCTCGTTCTCTACAATCATCATTCTGAGATGT 3655 28 100.0 32 ............................ TCGGTATTAATGCTACAAAAGAGCTAACCGAA 3715 28 100.0 32 ............................ GTCAAGACCAACCCAGACCTTGGCGTATTAAC 3775 28 100.0 32 ............................ TTGCAAAACAACATCACAAATCATCTGCTTAA 3835 28 100.0 32 ............................ TTTTGCATGTGCTCGTGAATCTTGCCCACAAA 3895 28 100.0 32 ............................ AGACGCTACGCCAAAGCCAAAAGTCACTGTGA 3955 28 100.0 32 ............................ TGGTGTCGGGATTGCACCCATTGTATTCAGCA 4015 28 100.0 32 ............................ TGATACACCCCAACAATGGACACTCGACCGAC 4075 28 100.0 32 ............................ ATCTTCCGAAGTAGGTGATGTGCGGTTTTTAA 4135 28 100.0 32 ............................ GGTCAGTGAAGTGTAAAGGTTGTTCTTCAGGA 4195 28 100.0 33 ............................ ATCACCGAAGGCGACTTTGACGATTTTTACTGT 4256 28 100.0 32 ............................ AGCAGAATGGAAAGATTGATGAATACATTCGA 4316 28 100.0 32 ............................ CTCAAGCGGTTTAATCATTGATGCCGCGATAG 4376 28 100.0 32 ............................ CAAAGCGTGAAAGTGGCTGGACAGAAGACAAC 4436 28 100.0 32 ............................ TTCAGGAAGATCATGCCAGTCAGGGTCAAAAC 4496 28 100.0 32 ............................ TATTCGACCACATCACCGAAATGGTCAACAAC 4556 28 100.0 32 ............................ TTTCATCGATGTAGTTTTCCGGCAAGCCGCCA 4616 28 100.0 32 ............................ TCGGTCTAGCACTTGCTGTCCCCTTGGCAAAC 4676 28 100.0 32 ............................ TGAATGGGATGATGAAGACGCATTATCCGTTC 4736 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTCGCTGTAAATTTCAGTGTCATTGCCTCATTGAGTTGTTGTGCTCATGCGTGGTGAGTTGGTTTGTCGGAGAGGGTTTCCACATTGGCTGATTTGTAGGATGAAACTCTGCATTGGTCAGTTCATAAGTAAACTTTGATTCAGTTCCAATTCGAGAAACTCTATGGTTTGGCTAATAATTTCAATGGTTTATTTTTGAGTTGTTTCAAGTGTAAAGTGTTGAAGCTTAAGCATAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCAGTGGTTACGGTTGGTGTGTTTGAGTTTAGGTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGTTTCTCTCAGGAAAAATCATCAAAAATTCACGCGCAAAGTTCTGAAAATTCAGCCTTTATCGTTCAAGCTGCACAATTTGGCTTTTGGGTTTTTCCTGATGCTGATTTGGTAGAACGCGTTGAAAGTTCAGCAGTTTCAAAATCGTCGAATAATCGTTGTTATCTGGCTTTCTTTGTCGTGGACTCTTAACGTTTTGGCAGCCAATGTCACAGCTTTTGGCGTTTGACGTGTGTTTGAGTGATGCTTTTGCGTAAAATGACTTTCAAGCAAATGAGTTTAAAAAGTCATTGTTAAACAATAGGCTACGAAACTAACAAACGCCTCAAGAGGGACTGTCAACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32613-34800 **** Predicted by CRISPRDetect 2.4 *** >NZ_WYCS01000072.1 Vibrio cholerae strain EDC_688 734_Vc_EDC_688_contigs_EDC688_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32613 28 100.0 32 ............................ TTAATGGTGACTTTTTGCGAGTGTTCTTGAAG 32673 28 100.0 32 ............................ ATTCGCGATACACCGGACGCGACCAACTGCTG 32733 28 100.0 32 ............................ GCTATCGCATAATACGTATTGGCCGTCTTCGT 32793 28 100.0 32 ............................ TTTAACCATGGCCCTGACGTCACTGGTAGCCT 32853 28 100.0 32 ............................ TCAAGTTCTTCTTCTGATAGCTCTGCTAGCTC 32913 28 100.0 32 ............................ TTGAAACTCTGATTGCATGCTCAAATGCTGGT 32973 28 100.0 32 ............................ TTCTAGAGTTGCATCAAGATCTCTAAAAATAT 33033 28 100.0 32 ............................ TTTGGGATTTCGCGCAGAACGCCGGCGGAGCT 33093 28 100.0 32 ............................ ATTAATTCGCCTTCCTTGTTTCTGCATGGTGC 33153 28 100.0 32 ............................ TTGAGGCTGATAATTTCATATTGCCACCTGCT 33213 28 100.0 32 ............................ ATCAGCTTTAAACGGCTTCCGTCTTTAATCCA 33273 28 100.0 32 ............................ ACAGTGGATACTGTTAGCAACAATAGCGCCGT 33333 28 100.0 32 ............................ TGAATTTTATACGGTGCGCGGCGGGTCGCAGC 33393 28 100.0 32 ............................ TGATACACCCCGACAGTGGACACTCGACCGAC 33453 28 100.0 32 ............................ GTTAGGCGTGGTGTTTGTGGCATTGAGTAATG 33513 28 100.0 32 ............................ TTTGAAGTATTCCTCATCGTATCCTTTGTCGC 33573 28 100.0 32 ............................ TGTTTCTGTGGTTGCTTAGCTGTAACGCTCTC 33633 28 100.0 32 ............................ TTATGCACAGCGATATTAGCAATTATGCAAAC 33693 28 100.0 32 ............................ TACATGCTTGGAGAAATGCAAGAGTGGGATAG 33753 28 100.0 32 ............................ TTTATCGGCATGGCGGTCACTGCTTACATCAA 33813 28 100.0 32 ............................ GTCTTTCATAGAGCTTGAGCTTGTCAGTCTGA 33873 28 100.0 32 ............................ ACTCTCCCGCGCCAGTCTGGAAGGACTCCAGA 33933 28 100.0 32 ............................ TGCGGGCGCTTTGTTATCTCCGCTATGCGCTG 33993 28 100.0 32 ............................ TTGTTGCTCGTTCTTACATTGCCCTGCTCTAT 34053 28 100.0 32 ............................ CTAATGGGAAACGGTGTGCGAATCGTTGTCGC 34113 28 96.4 32 ...........T................ ATTTGATTTGGATGTCTTCATCCTCTGGTGGG 34173 28 96.4 32 ...........T................ TATTTGCGGGAAAGAATTCAAGCAAAGAAACT 34233 28 96.4 32 ...........T................ ACCACTGACAGCGCCATTAGCCACATTATCTG 34293 28 96.4 32 ...........T................ GACCATTTGCGGAACGGAAGGACCAAACAACT 34353 28 96.4 32 ...........T................ TGTTCTCTGCGTCTCTGTGTTTATGACCTAGA 34413 28 96.4 32 ...........T................ CGCATCCAGGAAGAACTCTGAATAATTCGGGC 34473 28 100.0 32 ............................ TATCGCGATCAGTCGGCGTTGTTTCCACCGTC 34533 28 96.4 32 ...........T................ GCTTCCAGCGTCATCGCTGGGTTAGCCAAGGC 34593 28 96.4 32 ...........T................ AGTTTCTTGCGTGTTTTGGTCAGAAGATAATG 34653 28 96.4 32 ...........T................ TGCCAAAGGGTGCAATCATTCTCATTGATGAA 34713 28 96.4 32 ...........T................ TTTGCATTCAAAAGCATCACAAGAAGCGCCAG 34773 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 37 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGCGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGGAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //