Array 1 3948-4507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHJ01000002.1 Bellilinea caldifistulae strain GOMI-1 contig_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3948 36 97.2 41 .................................A.. CTACCATATAAATAACTAATGCCCCGACCAGTATCTCGAAG 4025 36 100.0 41 .................................... ATAAAGGTGCAAGCAATTGTTCATTGCCTCGCAATAGTAAA 4102 36 100.0 39 .................................... GGGATATAAAATCTTATACCCCTTCCATTCTGCCCGTTT 4177 36 100.0 36 .................................... ACCAAAGTCGCCTTGTCTTTGAACGGCACGATGTAA 4249 36 100.0 41 .................................... TTCATCACATCCTCGATATACCCCATCACTTTATCCATTCT 4326 36 100.0 35 .................................... TGTTCTTGCGCTTATTATCGCAAGGGCTCACCCCT 4397 36 100.0 40 .................................... GCTAACTCTTGACGGAAAACATAGCCGTTCAGTTTCCTCG 4472 36 80.6 0 ............C...............T..CGCCT | ========== ====== ====== ====== ==================================== ========================================= ================== 8 36 97.2 39 GTCCGAATCAATAAATGCCCGTAAGGGCATTAAGAC # Left flank : CCCGCTGGATGACGAGGATTTTTACGAGGGCTACCGCGAACGGCTGGAAAGCAAACTGCGCCACAAGCAGACCCAGATCAGCCGCACGGAACGGCTGCTGAACACCCTGCCGCCGGCGCAAAAGCCGGCCTTTGAGGCGCTGCTGGCGCAGGCGGTTGCCGACCGCAACGAGATTCAGGCCGAACTTGACCAGTTGTTGAAAACGCTGGAGGAGTTTAAGAGGCGCCAGCAGCCGCCGGTGCAGCCCGATGCGGGCGGGAGCGGGTGAGGGGAGCGTGCATGGGGGCAAGCATTGCGCATAGATTATGCGTACCCCCCTCCTGAAATCGGTATTTTTTTGGTGGAACCGGCAGGGGGGTACGCAGCAAAGATTAAAATTGTACGCAAAGGCAAATTTTTTGCCAGAAACGGTTGATTTTTGGTGAAGAAAATGATAGAATGATGACAGTAATTTGGACTGATGAGAAAAAACATTGGAGAAAAGCAGGTACGAGTCAGCA # Right flank : TGTTTCCGCACCCCTCCCGCTCAACCGGCAGCGCGGCGCAACTCCCCTTCCCCTCCGCCCTAAAACCGACCGCAAGCCAGCCCGCTCTTGTGTTAGAATCGAACGCGTATGGCACAACCGCGTTTGATTCTGGCTTCCAACTCGCCCCGCCGCAGCCAGCTGCTGGCGTGGAGCGGCTGGGCGTTTGAACTCGACCCCGCCAATCTCAACGAAGACCCCCTGCCCGGCGAGCCGCCGGCGGAGTACGTCCTGCGCCTTGCCGGTGAAAAAGCCCGCGCCGTTGCCGTCCGCTACACCGGCGAGCCGGCAGTGGTGCTGGCCGCCGATACCACCGTCGCCGACGGCGGCAGCATCCTCGGCAAGCCGGCTGACGCCGCCGAGGCGCGCGCCATGCTGCGCCGCCTGCGCGGCCGCACCCATCAGGTCTATACCGCCGTGGCGCTGATGGACGTTTGGCGCGCCCTGCTGGTGCAGGATGTCTGCATTTCCCACGTTCCCAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAATAAATGCCCGTAAGGGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.00,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 42254-41920 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHJ01000028.1 Bellilinea caldifistulae strain GOMI-1 contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 42253 36 100.0 36 .................................... AAAGAGGGGGGTATTTTTTTTGTAAAAATTTTTGAA 42181 36 100.0 38 .................................... TAAATCGCCTGCGGGCGGAACTTGTCCTTGCACGCTTT 42107 36 100.0 38 .................................... GTCTCGATGTTCTCATAAACGTCACAAAATCTGATTTC 42033 36 97.2 42 ................A................... AGAACTAAAAATCCTTTCCACCATCGGTATCATAGAGGAAAG 41955 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 5 36 99.4 39 GTCCGAATCAATAAATGCCCGTAAGGGCATTAAGAC # Left flank : CCGAGTTTGCGCTATTCTCCGGGCTGGGCAGCGGGGCGGCTTACGGGCTGGGGCAGGCGCGCCGTCTGGCTTCCCCCAGCCGCACATCGGATTAAGCGCCCGCATCGCGCCTCTGCACCTTAAAAACTGCATACGTCGTTTGAGGTGATGGACTACAACCCAACCGATTCGGATAATCCGGCTCATCCGGCGCTCCCGTTGCGGGAGATAGCCGCGCCGCCTGCCGCGGAAAAGTACGGGTGGTTGGGCAGGGAAAGCCGCTGCCCCCACCGGAAGTGGTGATCGTTTGAGGGTTTCGTATAGATTATGCGTACCCCCCTCCTCATTCCACCAAAAAATAACCGAATTTTGGAGGGGGGTACGCAAAAAAGATTAAAATTGTACGGAAAAAGCAATTTTTTGCCAGAATTGATTGATTTTTTATAAAACCGGTAATAAAATGTACTTATACTAAACGGACTTCACTGAAAAAACAAGAGAAATGCAGAGATGAATCAGTG # Right flank : ACGCCTTTTTGGCGACTTGGGCTTATTGTTGCTCATCCTGATCTCTTGATCTGCCTCAACGGGCTCGGCCGCTCATCAGCCGGTTGAAACGACACGACAACCGCCTGTTTTGCGCCCTCATCATCATCCATTTGAAGATCAATTACCGGCTGGACTGGAAAGTTTCGGGTATAATTTGCTGGTATAGCAGGGGGAATTTCGACTGAGGCTCAAGCCGTCAGGATAATAAATGACAATATCCGTTTAAATTGATCCGTAAAGGGGAAAAAAGAGATGATCAACGAACTGGAAACCCGAATGATTTCGGTGATCTTGCAATGCGGGGCATGGTACGCCGAGCCGGAAGATTACCATCTCTATCTGCATGTGGTTGCCGATGGCGAAAAAAAGATCCTTGTAACGACGGTTGCGGAGAGTGAAAGCGATGCCAGAAAAGTGATCCTTGAAGATGACAGCAAAAGAAAAATTCTTTTCACAATCTCCCTTTTCGACTTGCTCGA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAATAAATGCCCGTAAGGGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 215664-214880 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHJ01000011.1 Bellilinea caldifistulae strain GOMI-1 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 215663 36 100.0 36 .................................... CTCGCGGATTGCTCCAATCACAGACTTCATTGAACA 215591 36 100.0 39 .................................... GGAGCGCCCCCGACCGACTGTGCTGCGGCCGATTCCGGA 215516 36 100.0 41 .................................... GGAATAACAGTAGTACGGATAACAAGAAGGTTGTTTCGATT 215439 36 97.2 38 ....................A............... CCTGATATAGTCTGTTGAAACGTTCTTCTCCGAATATC 215365 36 100.0 41 .................................... GGACAGCCTTTCAACGGGGGGAGGAGAGGTATCTTAACAAG 215288 36 94.4 42 ........A.......A................... TGACGAATGCGATTAACGCAAAAAAAGCGATAACCCAGTTTG 215210 36 100.0 35 .................................... GTATCCTGGTTCTGTCTCCGTGTGTCTTACCCTGA 215139 36 100.0 38 .................................... CTACCAGTGTTTTGTGGAGCAATAAATCTGCTGACTCC 215065 36 100.0 38 .................................... CTTTGCAAAATCATCAAGTATTTCGTATTCAGCCATAA 214991 36 100.0 40 .................................... GCATTGATTGTTAGGTCAGGGGGTAAAACAATTTTGCTCA 214915 36 97.2 0 ....................A............... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 99.0 39 GTCCGAATCAACAAATGCCCGTAAGGGCATTAAGAC # Left flank : GCGGGATGTGACCGGCGGTTTTCGCCTGTGGCGGCGCGAGACGCTCAAACGCATGCCGCTCGAACGGGTGCGTTCGAACGGCTACATCTTTCAGGTGGAGATGATTTACGCCGCCCATCTGCTCGGCTTCCGCGCCCGCGAGATTCCGATTCACTTTGCCGACCGGCGCTGGGGGCAGTCGAAGATGTCCTTGCGGATTCAGGTGGAAGCCGCCTACCGGACGTGGCTGCTGCTGTGGCTGTACCGTGACCTGCGCCAGAAGCGTCCGCTGGCCAGCCCGTGAGGGGAGTAATTGCGCATAGATTATGTGTACCCCCTCTCCATTCCACCGAAAAAATACCAATTTCAGGAGGGGGGTACGCAACAAAGATTAAAATTGTACGGAAAGGGAAATTTTTTGCCAGAAATGGTTGATTTTTAGCGCAGAAAATGATAGTATGGTGGCATACGGTTCGGATAAGTATCGGAAAAATTCCGAAAAAAGCAGGAGCGAGTCAGCA # Right flank : CGAGGTCGAGTTTTGCTACACCATAGCCCACACCGGCAACAATATCATCGTGGATAAACTGGCGCGCGAACAATCGGGCGCCCGATTTCCGATCGGAAATGGAGGCCGCAAATGACGGAAAACAACCCCTACATCTCCCAGGAAATAATGGACTATTACTTCAAACAGTACGGCTTGTTTCTCCACAAATATGAGAACAGGCTCATTGAGCTTAGGGAACAATTGTCCAACTACCAGTTCATTTTTGCGATGCAGTGGTCTGGCAGGGGCTCGCCAACCATTGATGCAAGAATGATGTGGCCGCAATATTCACGCCTTCTCACCGAATATCACTCCCTGGCGTGCTTATACAACAATTTGCTGGATCGAATCTATCCAAAACAAAGTGAAGTTCCTGCGGAAAAGGAAACAGAAGAGCAAGAACAAAATACACCAGAAGAAGGAGGTACTGAAAATGAAGGAGATTTCATCGACCGACTTATACGAGGTCTTCATCGCCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGAATCAACAAATGCCCGTAAGGGCATTAAGAC # Alternate repeat : GTCCGAATCAACAAATGCCCATAAGGGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 15611-23996 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGHJ01000027.1 Bellilinea caldifistulae strain GOMI-1 contig_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 15611 33 100.0 37 ................................. ATTGAAGCGTTGGAACAAGCAGAGGAAACTAGCCATG 15681 33 100.0 34 ................................. GCCTCTGGTGCGGAATTATCGAGATTGATGACAG 15748 33 100.0 34 ................................. TCGGTGGGAGGGTATTTGTAGACTTTGCTCCTCC 15815 33 100.0 33 ................................. ACTGAGTGGCTCGGCCATTGGTCAACCGCTGGA 15881 33 100.0 36 ................................. AGGTGGTTGGCGAATTTGAGCGCATGTCTGCGACTC 15950 33 100.0 36 ................................. TCCTCAAAGACCTTGGACGGAGACCGGATGCCCAAG 16019 33 100.0 34 ................................. TACATGGCTGATACTCAAGCGGAGTTGGACGCGG 16086 33 100.0 35 ................................. TCAATATATTTGTGACAAAAATAGAGATATTGTCA 16154 33 100.0 36 ................................. GGGGTGACGAAGGGCGGAACAGGGTAAATCTGTAAC 16223 33 100.0 34 ................................. TTACATGTCCGCTAGATGCGGACGGTTTCGTAGC 16290 33 100.0 34 ................................. AAAGAACAATCACTTTGAACCCGAACGGTGCTTT 16357 33 100.0 36 ................................. CAGGCTGCGAGCCGGTCGCGCCAACTGTCTTGGCGC 16426 33 100.0 34 ................................. ACGTGTTCTAGCCATGGTTTTACCTCTTTTGGAT 16493 33 100.0 37 ................................. TCAACGAGAGTAGCGGTGTCGCTTTCCGCCAGCGATC 16563 33 100.0 35 ................................. CAGGCTGCGAGCCGGTCGCGCCAACTGTCTTGGCG 16631 33 100.0 35 ................................. TCAGCTGTAGTTGCGACTACCGTTAGGTTTTCCGG 16699 33 100.0 34 ................................. TACTCTAGCGTGCTTCCTACCTATATGCCTCCGG 16766 33 100.0 35 ................................. AATAATTATATGGTTGAAAGTGTTTACGGTTATTT 16834 33 100.0 36 ................................. TTGGAGCAAACCGACCCAGCCATAAGAGCCGCTCAA 16903 33 100.0 35 ................................. CCAGAAGTAGATTTTGGGATCTCCAACTTTACCTC 16971 33 100.0 34 ................................. AGAAGTTTCTCTTCAATTCTTTCGATGAACCCCA 17038 33 100.0 34 ................................. ACTCCATTAGCCGTTGTAAAATTACCGCCAGCGT 17105 33 100.0 37 ................................. TCGAGGCTTGCAAACGACTTGAAAAGAGGTTGAAATG 17175 33 100.0 34 ................................. ACTTCTTAAACCGCTTTGCCCACTTGCCCTCTTT 17242 33 100.0 35 ................................. CGTGCTGTCAAGTACTTTCTGCAACTTTTTAACTT 17310 33 100.0 34 ................................. AGGTGTGAGCAAATAATTCGCTCAACTTCCATCA 17377 33 100.0 33 ................................. CATGACGTGGTCGCTCACCGATAAAAATGCACT 17443 33 100.0 35 ................................. CCAAACGTCAACGCCGATCGTGGTTTTAGATAAGT 17511 33 100.0 34 ................................. TTGTTCTGCGGTCGTATCCGGTTGTTCGCCTTTG 17578 33 100.0 33 ................................. ACGAGTAATACCAGCACGGAGGATGCAGGGAAA 17644 33 100.0 34 ................................. GATTTGCTCTGGCGTAACAACCTCTCCCGTGCTT 17711 33 100.0 36 ................................. CGGGAAGGAAGGCAAACTCGATTTTATTGGCGGCTT 17780 33 100.0 35 ................................. GCCTGCCTCCAATTCCCACACACCACCTGCAACGT 17848 33 100.0 34 ................................. AGACGCTGTGAGGTATGAGATGGCTATCAAACTA 17915 33 100.0 35 ................................. TGCTTACAACGACCTGGTTGCTGAGAGCCGTGTCG 17983 33 100.0 35 ................................. TGGGTTCAATAGTACTGTCAGGTCTCTCGCAGTCG 18051 33 100.0 35 ................................. ATCAATTAATACGATCGTCTCTACAGCCGAATATT 18119 33 100.0 36 ................................. TGTCACAAATATATTGAAAAGTGTATACTAATAATC 18188 33 100.0 36 ................................. TGAGGGGATACTACCGGAATCGGAGGAAAGAACGGT 18257 33 100.0 34 ................................. TGTCGCCCCGCTGCCGGAGGACGGCGAGCGGTGG 18324 33 100.0 35 ................................. GAGAAAATCAAAGCCGGACTGGTCGGCTCGTCAGA C [18330] 18393 33 100.0 35 ................................. GTGTAGAACGGCTCGAACTCAGCGATGTAATGGCG C [18399] 18462 33 100.0 37 ................................. TTTGAGAAGAACTTTTGCTACAAGACTTTTGACCGCC C [18468] 18533 33 100.0 34 ................................. CTGATGCCCGTGCGCGTACTGTGGAGCGCGCGGG C [18539] 18601 33 100.0 35 ................................. TTTCTTGCGTTTGCGTACACGCCCGATGCCGGGCG C [18607] 18670 33 100.0 34 ................................. AAACTTTTGCGCGAGATAACTACTGGAAAAGCGA C [18676] 18738 33 100.0 34 ................................. TTCTTGCGTTTGCGTACACGCCCGATGCCGGGCG C [18744] 18806 33 100.0 33 ................................. CCGGAAGTTGATCTCAACGAGTACTGGGATTAT C [18812] 18873 33 100.0 34 ................................. GCCCGTGTCGTGGGGCAGGCGTTCGGCCTGTGCG C [18879] 18941 33 100.0 35 ................................. GTCATTGTCATGGCGTTCGTGGTCATCCCGCTGGG C [18947] 19010 33 100.0 34 ................................. ACCGCACGCTCACGGTTATCGCCCATCGCCCAAG C [19016] 19078 33 100.0 34 ................................. GTCAGAAAAGGAACGCTATGCGTTCCTCATGCCG C [19084] 19146 33 100.0 34 ................................. TGAATTACCGGAGGAATTACTGCAAACACGAAGG C [19152] 19214 33 100.0 35 ................................. CGTAAACTCGCGGCTGCTCATGCGCGCCAGTCCGG C [19220] 19283 33 100.0 36 ................................. GCTCATTGCTTGCGCTCGCGGTAACCTCTGCGCGCG C [19289] 19353 33 100.0 36 ................................. TTCCGAAAGTCGCCAGACGGTCGTATCTCGTGCCGG C [19359] 19423 33 100.0 35 ................................. GCATTGATGCAGTGTCCATACCTCGATCCGCGACC C [19429] 19492 33 100.0 34 ................................. ACGGTAGACCGGGTGGACATCGTTGGTGTGGTCA C [19498] 19560 33 100.0 34 ................................. GGTTGCGGGTGGCGTCACAACACGGACGTTCATT C [19566] 19628 33 100.0 34 ................................. ACTAGACCCTCCCGCGATAAAACATAGCCCTCGC C [19634] 19696 33 100.0 34 ................................. GGATGGATAGATACCCATTGTCGTATTCCAATGC C [19702] 19764 33 100.0 33 ................................. ACGTCAAATCAGGAAAGCGAGGCCAGATGCGAT C [19770] 19831 33 100.0 33 ................................. GAGCCGCTGGGTCGCGATACGGACAGCCTGGAC C [19837] 19898 33 100.0 35 ................................. GGCGATATAAAACGACTTGCGGACATAATCCCAGT C [19904] 19967 33 100.0 35 ................................. TGCGCACTGCGTTAATCGTTTTTTTGCGCACGGTT C [19973] 20036 33 100.0 36 ................................. CACCCAATGGGTGGTGCATGACGGATATTCGCGGGT C [20042] 20106 33 100.0 35 ................................. ATCCTCCTGCTGTGCCGCAGCCAGTAGCAGCGACC C [20112] 20175 33 100.0 34 ................................. TGGATCGTCATCTACTGCCTCGTCAATCTCGCGG C [20181] 20243 33 100.0 38 ................................. GTAGGAGTCTATCATTGATAAGGCTTCAACGGCGGTTT C [20249] 20315 33 100.0 34 ................................. TTCGTAGTACCGCCGCGCGTCATCGTAGATTTTC C [20321] 20383 33 100.0 34 ................................. CCCGCCGGATCAACCGCCGCGACCAGGTTGTCCG C [20389] 20451 33 100.0 34 ................................. GTCCAAGGCCAGGTTGGTGGCCATCACGGTCAGC C [20457] 20519 33 100.0 34 ................................. AATTTGATATTGAATCAGACTTTACCCCCCAAAT C [20525] 20587 33 100.0 34 ................................. TACGAAAAGAACATTTAACAATTTCGAGTCATCG C [20593] 20655 33 100.0 32 ................................. CCGTTGTCGCGAAGCAAGATGAGCATGGTCTC C [20661] 20721 33 100.0 34 ................................. GGAAACGGCGCGAGGCGCACGGCGTCAGCCGCTC C [20727] 20789 33 100.0 35 ................................. TGGATGGTAATCGTAATAATCCATCGCCTCGTAAA C [20795] 20858 33 100.0 35 ................................. GGAACGTTGTAATCGAGCATGATTACAACTTCCAC 20926 33 100.0 36 ................................. AGGTATAGCGGTTCGTTGTATTCAATCTTTGTTCGT 20995 33 100.0 33 ................................. GAATCCGAACGGCGCTTTGGCCGCCGGTTCTTT 21061 33 100.0 34 ................................. CAACCTATCCCGCCAGGACAGGCGGGACGCCTGG 21128 33 100.0 34 ................................. ACATCGTTGCTGGTGACTGACGTCACCGAATCGC 21195 33 100.0 35 ................................. TTTTAACTATATTTTTATATCTTTCTGGCAAACGG 21263 33 100.0 35 ................................. AGCCATTGCCAGTCTCCAAGTCAACTTCGTCCAGC 21331 33 97.0 33 .............T................... CATAATGCAAGAAGTTTTACCCGAAAATCTTTT 21397 33 100.0 34 ................................. GTTTCGGTCCCGCTTTGTTGTTCCGGAGATGTCC 21464 33 100.0 35 ................................. TTCGGCAATCTAAAAGAAATGCTTTGGCCAACCCT 21532 33 100.0 34 ................................. GCGAATATGAGAAGATGTATCTCATGCGCTGGGA 21599 33 100.0 36 ................................. GGTCACGAAATAGAAGAGTTTATGACACTCATTGCA 21668 33 100.0 35 ................................. AAGACCTAAACGAACTTGGTCTTATTGGCTCTTAT 21736 33 100.0 34 ................................. AATCTCGAAGTTGGACAGCAGGAAATGTACACCT 21803 33 100.0 35 ................................. AAGTCGCTGAAAGTTGTCGCCGACTTGTATCTTGG 21871 33 100.0 34 ................................. CTCCACCTCACCGAATTCCTCGATCAATTCGGGT 21938 33 100.0 35 ................................. GCTCCCCAATGCTCTTGCGTCAGGCGTCCCGCCAG 22006 33 100.0 38 ................................. CCAGTGGTAGCGAAAACTATAACGAAATTATTACCGGC 22077 33 100.0 33 ................................. AGGATTGCGGCGATGTTGGACGATTGTAGTTTG 22143 33 100.0 34 ................................. GCCTTCGAGCCTTTCCGCGATTGACGACAGGCTG 22210 33 100.0 33 ................................. CAAGATCACGCTGCCCCAGAATCTCACAATTAC 22276 33 100.0 35 ................................. ACAAATAGAACGCTTATAATTGTACTGTAAAATAG 22344 33 100.0 35 ................................. GGTGTTTCGGGCAGTAAGACCGCAGAGGCCCAAAA 22412 33 100.0 35 ................................. CGGCATACTGGTCGGCATACTGGTACTGGTCGGCG 22480 33 100.0 35 ................................. TCCCGCTTTTCGGCAACCTGCATGAGATACCAGTC 22548 33 100.0 34 ................................. ATTGAAAAACCACATTAAAATATCAGATAACTTA 22615 33 100.0 34 ................................. ACCTCACTCAACTCCTCTATCACGAAGGATTCTT 22682 33 97.0 34 .G............................... TCTGTCTGTCTGTCTGGCTGGCTTGCCTGTTGCC 22749 33 100.0 33 ................................. ACTTTCGCTCAGCACGCGGATACACGCGAATAC 22815 33 100.0 34 ................................. CAGTAGGGGTTTTTGTTCCAGTTAAAAATCTCAA 22882 33 100.0 33 ................................. TCCGTTTTCGGCAAAACAGCTTTTTCTCGCGGC 22948 33 100.0 33 ................................. ACTTTCGCTCAGCACGCGGATACACGCGAATAC 23014 33 100.0 34 ................................. CAGTAGGGGTTTTTGTTCCAGTTAAAAATCTCAA 23081 33 100.0 35 ................................. TTCGAGATTGCCAAATTTCAGTTTATCGTAGCTGT 23149 33 100.0 33 ................................. TCATCCTCATTGATGGCAACCAAGCGGCGCGCT 23215 33 100.0 34 ................................. GCTACGCTCATTTATCCTCAAGTCCAGACTGCTT 23282 33 100.0 34 ................................. GAGTAATCTAAGTTTAGATCATTGCAGACTCTAC 23349 33 100.0 34 ................................. GCTCGTAATCGTATGCTCCGCGTCCAGCCGAATG 23416 33 100.0 35 ................................. TTATTTGCTTGTTAAAAATATTGGGCTTAATGATG 23484 33 100.0 35 ................................. TGTTAAGGGGATTCTCACCCCTTTAACATATATTT 23552 33 100.0 34 ................................. TATTTTGTTAATAGTAAAACCTTACAAAACCCTA 23619 33 100.0 35 ................................. CCATATATTTGAAATTACGTGTATCGGGTTGGGGC 23687 33 100.0 38 ................................. AATCATCTTTACGATTATACACCTAGTACACGTTTATC 23758 33 100.0 36 ................................. ATCCCCTCTATCCTTTTTGTAATTCTTTCAATCAGT 23827 33 100.0 34 ................................. GGGCTTGCAGACGCTGGAAATCTCTTTTTCGATG 23894 33 100.0 37 ................................. CCCCCTCTGATACTGAAAATTGTAATCATGCTCAACA 23964 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 124 33 100.0 35 GTCGCTCCCCCCACGGGGAGCGTGGATTGAAAC # Left flank : TTTGGTGATTATGGAAGAGGTATGAAATGTTCGTTCTCATTACCTATGATGTCAACACCGAAACCGAAGCGGGAAAAAAGCGTTTGAGAAAAGTGGCCAAAGCCTGTCAGGATTACGGTCAACGGGTGCAGAATTCGGTTTTTGAATGTGTTATTGACCCGACCCGTTTTCGGTTTTTGCGAGCCAGGCTTGAGAAATTGATTGATAAGGAAAAGGACAGCCTCCGATTTTATTTTTTGGGCGATGAGTGGAAAAATCGGATCGAGCATATTGGAGCTAAGCCAAGCCTTGACATTACCGGAACTCTGATAACCTGAGTATAGGGCAAGTGGTTGCGAACCTGAAGTGCACACGAAAATTCAGGGAGGTTCGCAGGAAAAACAGCACCTTAACAACAGAATATGGTAAAAGATTGATCGTTTTTCGGTAATTATCGGGAAACCGAAAAAGAACGAAGCCAACATCTGGCGTTTTGGGGATTAAAACCGCCAGATGTTGCT # Right flank : CGGGTTTCAAAAACTCTAGGGCCTGTATGCAAACCAATTTATCATTGGTCTCATGGTATATAGATGTGAACTAATGAACGAACAATGGGAACGAATTGAACCATTACTGCCACCGCAGAAACCAAAAGCCAGGTGACCGGCACACGAGCATCGAACTGTTCTCCATGGGATACTCTGGATTGTACGGACTGGAGCGCCCTGGCGAGATTTCCCAGAACGATATGGGAAATGGATAACAGTGTACAGCCGCTTTCAGCGCTGGCGTAAAAAGGGAGTAGGGAAGAAAGTTCTGGCTGAACCGCAAACTCTGGCAGATCAACAGGGTGAACTGAGTTGGCAAATCCATCTGGAACAAGGTGCAGTTTTTCCTAGAACAACTGGACGGAAACCTTTGTATCCCAAACGATTAATTTCCGATAAAGGATACACCAGCCGTAAGTTCCGTTCATCATTTGGGAAAACACCATATTGCAGTGACCATCCCGCACAAGGAAAAAGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCCCACGGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCCCACGGGAGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.10,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //