Array 1 192103-192682 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 192103 30 93.3 31 ............................TC AAAGCGCCCCCAGTGTTCCTGAGCCTGTTGA 192164 30 96.7 31 ............................T. CCCGACGCTCGTATTCTCCCGTGGTGTTCTA 192225 30 96.7 31 .............................C AGGGGTTCAAGGCAACGACGGCAATACTCAA 192286 30 100.0 31 .............................. CCAACAGGTCGGCGCCGCTGATGAGCTCCTC 192347 30 93.3 31 ............................TG CTGCGGTTGAGATGGTTGCGCAGCTCCTCCA 192408 30 96.7 31 .............................A CGCCGAGGCGAATCAACTTCTCGCGGTACAT 192469 30 96.7 31 ............................A. CCGGCCCGATCTCGCCCCACCGGGTGCCGAC 192530 30 93.3 31 ............................GG CGTCCTGCGGTTCGAGCGGCTAGACTTCCGC 192591 30 90.0 31 ....C.........C..............G CAGCCATCAAACCCTCGCTCACCCCGGCCTC 192652 30 83.3 0 ........T.....C..........G..GG | G [192675] ========== ====== ====== ====== ============================== =============================== ================== 10 30 94.0 31 GTGCTCCCCGCGCATGCGGGGATGGACCCT # Left flank : CGGCGGCCAACGAGGCGCTCGTGGACGAGGCCGCCACCAGCGAGGTCAAGGGCCGGATCAGCACCGCCGTGGAGAAGCTGTTCTCCTACGACTACTCGAACGTGGAGAAGACGGACAAGGCCGCCGAGAAGTTCCTGACCGACGAGGCCGTCGAGCAGTACGAGACCATGTTCGAAACGGTGCGCGAGCAGGCCCCCGAACAGAAGATGGTGCTCACCAGCACCGTCACCAACGCCGGGGTCACCCTGTTGCAGGACGACCGTGCCGAGGTGCTGCTGTTCGTCAACCAGGACGCCACCAGCACGGCCAACGGAAAGAGCGGGGTGTACCCCGCCCAGCTCACGGTGCGGGCGCAGAAACGCGACGGCACGTGGAAGATCACCGACATGTCGCAGTTCTCCGGGTGAGCCCGTTTTCCGAGCGGGTCCGCCTCCGACCGCGCCGAACCAAAAGTGATTCCCACAGCGGGAAAGTACTGTTAAGATCGCAGGTCACGAAGT # Right flank : GGGTGGGCCGGTTTCAGGCAAAATCGGGCCACCTACCCCGTCCCCAGACTGGGCATGCCACGAAAAAGCGCCCCCGGGGACCACTTCAGAAGTCTCGGGGGCGCCGTGCTGTCGTTACGGACTCACTCGAAGCGGTTGTTCTTGACCGCCTCCAGGAACGCGGTCCACTGGCCGCGAGTGGTGGTGAAGTACCCGGCCGAGCGGTTCTTGGTGTCGCGTATGGCGGCGCCGTCACCGACGCGGCCGACCTCGACGCAGTTGGTGCGCTGGCCCGAGCGGCTCGACTTGCGCCAGCCCTTAGGGTGTACCGTCACTGTCGGTCTCCTTTTCGTCTGCACAGTTGGCGATGAACTCTGCCGACGCCTCGGGACTCATCGCCACGTCGTGCAGGTTAGTAACCGCATCTTGGTAGGCCTTCGCGGTGCCCGGGTTGTGCAGGGACACCGATGAGTGGTAGTGCTCCATGTGCACGATCGGCGTGGCCTTCGGGAACTCGAACA # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 197277-197854 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 197277 29 96.6 32 ............................T GACGTTCTTGGACTTCCGGCCTTGCTGGTCAC 197338 29 96.6 32 ............................T GGCCCAGATGACAATCCCGATCGAGTACCACA 197399 29 100.0 32 ............................. CATCATGGCCGCCGTGGAATCCTACGTCGCAG 197460 29 100.0 32 ............................. GTCAGCGGAAACACCAGCGGGAACTGGAGCCC 197521 29 93.1 32 .....................G......T CGCTTCCCGAATCTGGCGCAGCCCCGCCAGGA 197582 29 96.6 32 ............................A TCCGCTGTCGAGATACGTGCGGACGCCGCGAC 197643 29 100.0 32 ............................. CCTGAATCCCACATATCCCCGGATGAATTCGG 197704 29 96.6 32 ............................G AGTAATTCATTTTCCCGACGTTGAGGATCACC 197765 29 100.0 32 ............................. TCATCAACCTGTTTGGCGTCACCTGGCCGCAC 197826 29 93.1 0 .....................G......T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 GTGTTCCCCGCAGGCGCGGGGATGGACCC # Left flank : TGAGTACCACGCTGCCCACACCCTGGTGGGACAACACCGTGGTCTGGCTGTTGGCCCAACTCCACGGGCTGCCCGCCGGGGTCACGGTCGGGATGCGCCTCGATCCGGACACCGGTCAACCGGCGGCGGCCACGATGAGTGCCCCCGACGGGTCGGCTGTCGAGATCAGCCTCACCGCCTCCGACGACGGTCGTTATGGGGTCACCGGGACCGGACCCACCGACCTGTGGGCTCCGGTCGAGGAGGCCCACCGGAGCTGGTTGACCCACGGCAAACCCGGCTGGTCGCGGCTGGGGCTGACCGTTGCCGAACACCGGCAGTGGCTCTGGATCGACCACCCCGACAGCCCCAGCCGCTGGAGACTGTGACCACGTACGAAACGCCCCGGACTCCGCCGGGGAGGCGGTGGTGCTGGCCGATGTGGACTGTCTAGGATGTGTGTACTTCCCACGAGAGATCACAACTGGATAACGGTGCTACGGAGTCGCAGGTCACTACGT # Right flank : TGACGACGAAGGGGTGGTCGCCGCGATTGAGTGGTACGTCGAGCACCTGCAGCAGGGCGAGACGCGGCTAGCCCGCGGGATGCGGTCCGAGGTCTGGGAAGAACCGGGAGAAGTGAAACGCGAGCGCGTACAGCTGCTGGTCGCAGCATCGAAGACGAGTATGTACTCGGCACCTGGAGCTGGCTGCGTCAGCAGCCTGACCAGCTGTTACGTTCGAACTTTCCCGGCTCCTCCGTAAATCCTTGCTGCAGCCGAATCAACGACTCACGACACTAGACCGGTGTCGACATGGCACGCGGAGTGTTTTCGGGGAGGTTTCCCCGAAAGTCCGCAGCTCCGCTGTTGTGCCGTGCGAACACCAGCGTGAGAGCTCCCATCGTGAGTGCGCCTAGCGGTATCAACGGCAACAGTAGGATGCACAACATACTCGACGGAACACCACCGAGCAGTATCGAGACTGCCAGGACAAGCAGCCCTGTCAGCAGTGCGGCACCGAGGAA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGGACCC # Alternate repeat : GTGTTCCCCGCAGGCGCGGGGGTGGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1332157-1333100 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1332157 28 100.0 33 ............................ CGGCTGCGACGTGCTGACGCTGCCGAACATGTG 1332218 28 100.0 33 ............................ CAAGCTCGGCGCGGCGCGCGGAGCTCCGTTTCC 1332279 28 100.0 33 ............................ AACAGGTGCATCACGCCGAACTTCTTCTTGTAG 1332340 28 100.0 33 ............................ AAATTCCCTCACACAGCTCCCGACGCGAACGGG 1332401 28 100.0 34 ............................ TGACCAAATGGCCTTCGTGAGCGGTGAGTGGGGT 1332463 28 100.0 33 ............................ CCGGTCCTGAGTCGCTGCTCAGCGACATGGGCG 1332524 28 100.0 33 ............................ GTGCGATCTCCAGCCCCGAGGTTTGGCTCATGG 1332585 28 100.0 33 ............................ GTTTCGCACAGTCACGCTAGTTCGTACGCGTGA 1332646 28 100.0 33 ............................ CCACAGCCACTCCCACATCAGACCTCCCGGCCG 1332707 28 100.0 33 ............................ CGGGGACCAGATATCGGCGTGGGCCTACCAGAA 1332768 28 100.0 32 ............................ ACGGATCCAATGCATCGACGATGGCCACGATC 1332828 28 100.0 33 ............................ GTAGCGTTTTTGTTCCACTCCCTGTAGGACCTG T [1332830] 1332890 28 100.0 33 ............................ CCGGTTTCAATGGTTTCAACGAGATCGGGTGAC 1332951 28 100.0 33 ............................ CCTCCAACACCTCGCTGACGAGGTTCCCAGCGC 1333012 28 100.0 33 ............................ TCGCAGCAGGACAGCACGAGCAGCGAAGGCGAG 1333073 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 16 28 100.0 33 GGCTCACCCCCGCGTGAGCGGGGAAACC # Left flank : GGAGACCCCGAGGTTGCTGCCGTGCCTACCGTGCCACGCACTCTTAGCGCCGGTCGGGCCGTGGGCGGCCCACCAGCCGGGAAGCCCGTCCGGGCGGGGTTCGGTGAGCCGCACGAGATAGGCCAGCACGTCCCGCAGCAGCGGACCTTCCCCGTAGCGGCGCAGCAGATACGTCCCGAATCCGGTCAGCCCGGCCATGAGGTCGTACTCGCCCTTGTCGGGCAGGTCGCCGTGATCGATGCGGCGGTGGGCCGTGGCGAGGCGGACGCGGGTGATCGTCTCGATGTGCCCGTCCACGGTGGCCAGGACACGGGTCGGTTCGATCGCGGCCAGCGTGAACGCCACGGCGGGAGCGCCCTGTGGAACAGGGTCGCCTGGTTGGGGTGAGTCATCACTGGGGCGGCGAGCATCGCTCGAATCCCGTCCATCCAGGGCGCGCCCTGTTCCCGGTGCAGCAGCACGGACCCGGCCGGGCCGTCCGCGAGCGACTGTGCCCGCCG # Right flank : CACTTTTTGTGCTGGGAAAATAAGTGCGATTTACCGTTTTGTGATCTCCGGTTCGGAATCGTTGTCAGGGGTCAGTGTCCAGGAGACGAGTGAGAGGCCGTCGAGGTCGACGATCGTTCGGCCTCTGGTTCCGGGGCCGTGGGTGTGGATGTTGTAGCCTTGTTCGTTGTCGGCGTTGCAGATGAGCGCGGCCCAGCCTTCCTGGTCGTCGATGCTCTCGCAGACGGCTTGCCACAGGTATTCTCGGACGCGGTTGGTCAGTGTGCCGACGTAGACTCCCGGAGCAGGTTCGAGCATCCAGCGGGTCAGGGCTCCGCGAGTGCCGTCCGCGACGGCGCTGGTGGTGATAACGGCGAAGGTGCTCATCAGAATTCCGGATCATCGTTGTTGTCGTCCAGGCTGGCGTAGTTGACCCCGGCGGGCACGTTGGTCTCTGGATCCCACAGGTCGACCACTCCGGTGGGGGCGTCTTTCTCGGGTGCGGCGCCACCGTTGAGGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTCACCCCCGCGTGAGCGGGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 1343695-1342268 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1343694 28 100.0 33 ............................ CTGAGGCTCTTGCGATAGCCACCGAGGAGTTCG 1343633 28 100.0 33 ............................ GCTCGGCCTTTTCTTTCAATCGTGGCATTATCC 1343572 28 100.0 33 ............................ CACGACGCTAGCTGGGCGAGGAGGATGCTCTTA 1343511 28 100.0 33 ............................ TCCCGGCCGCCCGAAACGCCGCGGTCAGCTGCC 1343450 28 100.0 33 ............................ CGAAGACTACGGGGTGGTCTGCGAGCTGGTTCG 1343389 28 100.0 33 ............................ CCAGGCCTACGAGCACATCTCCACGTACATGGA 1343328 28 100.0 33 ............................ CAGGCTGGGCACCCCACGCTTGCAGGCGTTGAC 1343267 28 100.0 32 ............................ GACCTCCGCCACGTCTATGTCGGAGCCCGAGG 1343207 28 100.0 33 ............................ GTGGACGACTCTCTCGCGTTCCACCGCAAGACC 1343146 28 100.0 33 ............................ CGTCGTGAGACCTGGCGTAAAACTCTGACATGT 1343085 28 100.0 33 ............................ GGCTGTATGACCTGCGGTTTTCTTCCACGTGTA 1343024 28 100.0 33 ............................ TCAATGGTACCCGTTCCTGACCGGTATGTACCC 1342963 28 100.0 33 ............................ GCAGGATGGGACCCTTGGTCAGTATCTGACATT 1342902 28 100.0 33 ............................ CGGAGCTGTTCGTACACCCCTACGACGCGTGAT 1342841 28 100.0 33 ............................ GATATTCGCGCGCCTCGCGGTCAGCCTCGTCTA 1342780 28 100.0 33 ............................ CGCCAGCGAGAGCGCCCGGACTTTCCTGCGACG 1342719 28 100.0 33 ............................ TCTGCCCGTAGGTTGGCCCGCTGAGTGCGGCGC 1342658 28 100.0 33 ............................ GCAGCTGCGGGTCTGTGACATGACCGACCCGCA 1342597 28 100.0 33 ............................ GGCGCCGGTGCGGCGGCGTTTCCGGCGGCGGTC 1342536 28 100.0 33 ............................ GTCGGCGGCTGCCGTCGGCGTGGCCTTCGCGTG 1342475 28 100.0 33 ............................ CCGTGGATCTGTCATCCCTGGTCGAGGCGGCCA 1342414 28 100.0 33 ............................ CTCCGCGTCCAACCCCGCCGCCGTCGCCAACGC 1342353 28 89.3 30 .TT..........G.............. TTGGACACGTTGCTCGCCGCCGAGGCCGTC 1342295 27 78.6 0 .A.C.....A...G.....T.-...... | A [1342270] ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.7 33 GGATTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCTGCCAACAGACAGGCCCGAAACCGTCGTTGCTCGCTCAAGAGCGTAAGGAGGCCGTTCGTGTGATCCACCGGCATCCAGAGAGATGAGCTGTGCAGAAGCTGTGGTTCGGGCCGAGCTAAACATGCCGAGCGGGGCGACTGTTCTCAACATCACGGCCTTTCCCACCTCCGCATAGAAAGGGCGGCTCGATAACCGTTCCCTTCGCGGTCAAGCGAGACACAACCGGATCGAAGTATCACCTGATCTACAACGACGTCAGTGTTTCCTTGACAAAGATGCTTATTGACGACACTCGTCCGGTCCGGTCACCAGCCCGCGTAGCAGCCAGAGTTCACACGCTGCTCGAGGCAAACACGACCATGCGGCTACACGAACTACGCCTTCGATGACAGACTGATCGTCGATGCCCCTCCCCACACCTTCCGACATCGCGGCAAGCGAGCACACCACAAGATCACAAAACGGTAACCCACTCTGATTTTCCCAGCACAAAAAGG # Right flank : GAAGATGCTCTGAGTCACCGATAAATAGCAGGAAGACCCGGCCTCTGACGGTGGCGGCACGCTGAGGTACTACCACCGTCAGAGGTCGCTTCCACTCTTGTTAACCGTGGCCTCCCCCCACTAGCGAACAGAGTTCTGATCAGGTAATTCGGTCCGTGATCAGGCCCTGCTACGTGGTCGTGGGGAACTGCGACAAGACACCTCTCGTCGAACAGCCAACCGGTACACCCCCACCGTGTGGGGATCTCCCCTAAGGGTAGTCGAACAGTACACCAGTAAGTGTCTCCGTCCCCTCAATGGGCGCATACCGTGCTGCTTGTGGAGCGACAAGAAGACAACCTCGTTGCACTGAACTCTTCGGATAGAGCTAGCAGATCAGGTCAGCGTCGACCCCCTTGTTCACCCCAAGTCCCCAGCCAGTTACAGTAACCTTCACAAAGGTTGGCTGTTCTACCAAAGAACTTTGGGGTCCAATGCATTTATACGTGTGGGGCAAGTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2616568-2617042 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2616568 37 97.3 35 ........................G............ TACCGGCACCACCAGGTACTGGACGAACTCGGCGT 2616640 37 97.3 35 ........................G............ TCGACGACCTCAGGAACGTGCTGTTCGGAGTCGCG 2616712 37 100.0 35 ..................................... TCCATTCGCCAGAGCAGTTCGCGGACGGTACAACC 2616784 37 100.0 37 ..................................... ATCCCCGTGCACACCCTCTACCAATGGCGCAGCCGCG 2616858 37 100.0 35 ..................................... CCGTCCAGCAGCCGCACCCGCACCGAGTCCCAACA 2616930 37 100.0 39 ..................................... ATGCGTTGGCCTTCTTCAAAACCCTGGCCGACACTCCCG 2617006 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 99.2 36 GTTGCGATCCTCGCCAGCCCCGAAAGGCTGGCGCCAC # Left flank : GTTTCCTCCCGCCCGGGAGAACACGGTGGACGGAGGGTCCCCTCGTCGGAGACACAAGAACCGTCCGGAAATCTGCGAGGAGCACGAGCACAAGCGGCGGATCACCACGCCGTGAAACCAGAATCGGGCAAAACCGTCTTCGAACAGCTGTGAACCCGGCCGGAAAGGGACAGGTGTGGGGAGGATCGTGGTCCGATCCTGGTTAGGCCGCGCCCTCGGTTGGGTCCCGTCGGGCGTGGTTGGTTGTCGTTGTGGGGAGGGGTGCTGCCCGCCGCCCGACCTCGTCGTGCCCGTCGTCCATCAGAGGCGCGTACCGCTCGGTCGTCTGGTGACTGGCGTGGCCGAGCAGCTTACGCCCCTCCGGCGAGATCCCCGTCGCAACAGCCACGACGCGTACGTGTTCCGGAGGTCGTGGGGGCGGACATGGCCAATCCCGGTGTACTTCAGCGCCCACGCCCACTCACTGCGACCCCGTCCACCTCCTGTTCGGACGGGAAGTC # Right flank : CGGCAGATGAGCAGGGATGTCCGGGATATCCACACTGGCGCTGTGACCATCCCGTGACCGACACGCCGAGCAGAGGCTTGGGAACCTCCCGGCGTGTCGACACACACTTCCCCTCCCCAACCACCGAGTCCCCGCCTGCGCGGGGGTACATGTCCCGATTTTGCCTAAAACCGGCCCACCACGGCCCGTACTTCTCGCTGCGGACACAGCACTGTCGTACCCGGACAGGGAGCGGTCAGTACCACTGGCCAGGCTGCCATACCACCAACGTGGCCCCTTGGGGCAGGATCGCGGTCACGGCGGCCTCACAGTTCCGTTCACCGGGACACATACGATTGTTCAGCACGATGAGGTCGCGGGCACGCCCGGAGACCTCCTCGCGCCCGCTGGTTTCGGTGAGTTCGGTGCCGTCCTGGTCGTAGACCAGCCCGGTGGTTTGTCCGCCGGTGTAGTCGGGCAGCCGTGAGCGCACCCGTTCGACCCAGCGGTGGTCTCCGGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCTCGCCAGCCCCGAAAGGCTGGCGCCAC # Alternate repeat : GTTGCGATCCTCGCCAGCCCCGAAGGGCTGGCGCCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 6 2756709-2756378 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2756708 37 100.0 37 ..................................... GCACTTTTGCCGAGCATGTCGGCGACGACTTGGTCGG 2756634 37 100.0 38 ..................................... GAGCCCGACCCGGTATCCCGAACGGCCCCCGGATACGG 2756559 37 100.0 36 ..................................... CAGCGGCTGGGCAGGATCTTCCGGAAGCTGCGGCAG 2756486 37 100.0 36 ..................................... GACGCCGAGCCCGAGCTGTCGGACGTGATCGCGGCC 2756413 36 91.9 0 ...........................A.....-..G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 98.4 37 GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Left flank : CGCAGGCGCGGGGATGGTCCCAACTTGTGAGAACAGGTATGAAATCTGCTAATGTGCTTCCCGCAGGCGCGGGGATGGTCCGGCATATTCCCTAATTAATCGTATTAAGGGTGAGTGCTCCCCGCAGGCGCGGGGATGGTCCCCATCGTAGCCATTTAACACCTCACGTGTAATCGTGCTCCCCGCAGGCGCGGGGATGGTCCCCATGATGTGCGGAGTGCCAGCTAGCCTGAACAGTGCTCCCTGCAGGCGCGGGGATGGTCCGTACTGGATGTCTCCGTCAATCATGACGATGACGTGCTCCCCGCAGGCGCGGGGCCGTGCTGGGCCGGTTTTAGGCAAAATCGGGTCACGCACCCCCGCGTAGGCGGGGCTCGGTGGTTGGGGAGGGGAAGTGTGTGGCGACACGCCGGGAGGTTCCCAAGCCTCTGCTCGGCGTGTCGGTCACGGATCGGTCACAGCCGGGGTGTGGATATCCCGGACATCCCTGCTCATCTGCC # Right flank : GGGTTCGTGTCGAACACGCTGGTTCGGGAAGTCGTTGACTCCGTGGACGAGCTCCCTGCCCGGGGACAACAGTGATTCTCACAGCGGGAAAGTGCTGTTAAGATCGCAGGTCACCGTGCTCCCCGCAGGCGTGGGGATGGATCTCTCCGAAGGGACCGGTGGAACCCGGCGGTTCAGGCCGCCGGACTCGACGGCCTGACTCCGCATGACCCACGTCACGCGTATGTCTCGTGGCTGCTCCGGCGGGGTGTGACGGTCGAGCAGGTTTCGGAGCTGCTCGGGCACTCGACGATCACGATGACCCAGCGGTACGCCCACCTCGCCGACACCCAGTGGGACGCCGTTCGTGGGGCACTGAGTGGGGCAGGATTCGAAGGGGAGGGGCACTCGCACCACGATGGTGCCCCACATCTGCCCCACGTGGCCGATGACGACGATCACGGCAAGGTCGTCGATCTGGCCTCCCGTCGCAGGTCAACGGGATAATGGTGGTGGCGCCC # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-18.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 2757217-2756883 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2757216 29 96.6 32 .....T....................... AACTTGTGAGAACAGGTATGAAATCTGCTAAT 2757155 29 93.1 32 .....T......................G GCATATTCCCTAATTAATCGTATTAAGGGTGA 2757094 29 100.0 32 ............................. CATCGTAGCCATTTAACACCTCACGTGTAATC 2757033 29 100.0 32 ............................. CATGATGTGCGGAGTGCCAGCTAGCCTGAACA 2756972 29 93.1 32 ........T...................G TACTGGATGTCTCCGTCAATCATGACGATGAC 2756911 29 79.3 0 .....................CC.TG.TG | ========== ====== ====== ====== ============================= ================================ ================== 6 29 93.7 32 GTGCTCCCCGCAGGCGCGGGGATGGTCCC # Left flank : ATACGCCTCGGGCAACAAGGCCGAGATCAAACAGGTCGAGAAGGACAACGGAAAGATGATTTCCGACGCTATCCGCCAACGTCTCTCGGCGGATGAATCCACTTCGACTTCTGCTGCTCCTGCAGCTTCCCAGCCGAGCAGCGATCCGTATGAGCAGCTGAAAAAGCTTGGGGAGCTGCGCGAGCAGGGCGTGCTCTCCGAAGAGGAGTTCGCCGCCAAGAAGAGCGAGATCATGAACCGCCTGTGACGTGCGAAAGCGCTGGTCTGGACCGAGAGGCGCTGCGAGCGTACACGTATCCTTGTCGGTGATCATTATTCCGCACAACGAACAGCCGGTTGTCCGACTATGATGCGCGTGGCGCCAGCTCTGCGGGGCTGGCGAGGACCGCAACCGGCTCGCTGGTCAGCGATCCGGCTACTGGTACTGACTGCCGCTGCTTTCCGAACCAAAAGTGATTCCCACAGCGGGAAAGTATTGTTAAGATCGCAGGTCACGAAGT # Right flank : GGCCGGTTTTAGGCAAAATCGGGTCACGCACCCCCGCGTAGGCGGGGCTCGGTGGTTGGGGAGGGGAAGTGTGTGGCGACACGCCGGGAGGTTCCCAAGCCTCTGCTCGGCGTGTCGGTCACGGATCGGTCACAGCCGGGGTGTGGATATCCCGGACATCCCTGCTCATCTGCCGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACGCACTTTTGCCGAGCATGTCGGCGACGACTTGGTCGGGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACGAGCCCGACCCGGTATCCCGAACGGCCCCCGGATACGGGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACCAGCGGCTGGGCAGGATCTTCCGGAAGCTGCGGCAGGTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAACGACGCCGAGCCCGAGCTGTCGGACGTGATCGCGGCCGTGGCGCCAGCCCTTCGGGGCTGGCGAAGAT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGGTCCC # Alternate repeat : GTGCTTCCCGCAGGCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 2766166-2766335 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================= ================== 2766166 27 100.0 45 ........................... CAGATACCGGGCCAGCGGTCGGCGGCCCACCGGATGTTGCGATCC 2766238 27 100.0 44 ........................... TCCGTTCAACTCGCAGATGTGGCGCGAGTATCGAGTTGCGATCC 2766309 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================= ================== 3 27 100.0 45 TCGCCAGCCCCGCAGGGCTGGCGCCAC # Left flank : CCGTTTTCCTCGCTCCAGAGTGACCACCGTCCAGTGGCTGGCACGTAGGGCTGGCCTTCCCGTCGCGCGATCGGCCGGATCAAGCGCCCGCGGCACGAGACCGGCTGGTCGTAGACCGGGGTGAGGGCCTCGTCGCCGTCCGGGCAGTCGTGGCTCTGGTGGCACTCCGGAGCCGGCTGGGAGATCCCGTCGCGACGTTGCCACATCGGACAGTAAATACACAGGTTGATCCGATCGGCCACCCGATCGGATCAAGCGGGCGAGTTCGCCTACACCCCTCTCGCTCCCACTGCCGGAACCTAGGTCTGATCGGTCCCGCCGCATCCGCGCTACGCACCGATACCTACTGGTCACAGGATGGCGTTGTGGCACGGTTCATGGTCGAAACTGGTGGTTCGATCTCGCATATATGTCGAACTGCTGTTCGAATGGCCGTATGTGCGGTGGTCAGGGTGATCAGCAGGAGCAATCGAACTCGGGGCCGGTGGTGCCGGCCGGGT # Right flank : CGGCAGATGAGCAGGGACGTCCCGAACAGCCACCTCGCCGCTGTGACCATCCCGTGACCGACACGCCGAACAAACGCTTCGGAACCCCCCGGTGTGTCGGCACACGCTTCCACCTCCGAAGCCGGCGCGGTCGTCGTTCCGTTCGCCCGAGATGACCTCGAAATCACATCCCCTCTCTGTTCACCACGCGATCAATATTGGCACACCCCACCACCTTCTTGGCGCCTCAACCTCCAAGCACCGGCTCTCCCACCAGATCCGGCAATCCACTTGGGAACCTCCCGGGGTTTCGGGACACGCTTGGGGTTCCCAAGTGACTCGACGGCTTTTCGGTACCCCCGGATCGGGGCCGGGTAATAGCTGTCGGTTGCTCGCGATACGTTCCTGACCGATTCCGGTGAGTGATGTAACCGACTGGGGTGAGAGGTGTACGCACACAGCGTCAACGTCAACGGCGACAGGCACGGCTTCTCGGAACACGCGCGTGCCACCGCGGAGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCCAGCCCCGCAGGGCTGGCGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 9 2774458-2774792 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2774458 37 97.3 36 ..........T.......................... CCACGAGGACGTAGCGGGGTCGAGCCACGCGAAGCA 2774531 37 100.0 36 ..................................... CTGCAGGACTCGACAGCGCACCTGCTCACCGAGGCC 2774604 37 100.0 37 ..................................... AGGCCCGGACGGACGTGGTGCTTGATGTGCTTGCCGA 2774678 37 94.6 37 ..........T...T...................... ACCGTCCACGGGTGGGCGGCTTCGCCGCCTCCGCGGA 2774752 36 86.5 0 ..............C............-CT.....C. | A,CC,GT [2774771,2774779,2774788] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 95.7 37 GTGGCGCCAGCCCTGCGGGGCTGGCGAGGATCGCAAC # Left flank : GCTACCTGCGCGGGGACCAACCGAGCTACACCCCGTGGATTGCGAGCTGACCGTGGAGCTGTTGATCACCTACGACGTGGACACCACTACCCCGGAGGGACGTCGCCGGCTCAGGCACGTGGCCAAGGCGTGTGAGGCATACGGAATCCGCGTGCAGAAGTCCGTGTTCGAGGTCGTCTGCCGCCGTTCCGACTGGATGTACATGAAACAACGACTCAACGAGATCATCGATCCGACCGAGGACAGCATCCGCGTCTACGCTCTCGACCATGGGAGCTTCGCGGCGGCCGAGCACATGGGACAGTCACCGCCCGCGCCGCACGACACTCCGCTGGTGTTCTGAGTTTCCGGCAAGAACGTGATCGAGTGTCGTTGTACGACTTCGGAGGTGCAAGCGTGTCTCGACACGCCGCGAGGTTCCCAAGCAGCTGCTCGGCGTGTCGGTCACGGGATGGTCACAGTGGCGAGGTGGCTACCCTGGAAATCCCTGCTCAATCGCC # Right flank : CTCGGCTGCAGGAACTCGGTGGTTGCCGTGTTCCAGTCGAAGGTGGCCAGGCCGTCGGTGCCGCGGCTGGTGAAGGCATCCGAGTCGAGCAGGCGGAGCCCGGCATCAGTCAGCAGGCGCGTGTTGGCCGAATAGGCGGGGTGCTGGCGCAGCACGGGTTTCACGCAGGGAACGGCGGTGGTGGGCACACCGCTGACCAGCAGTTCGTTGACCAGGCTGACCGCCAGGGTGTCGCTGATACCGGCCGCGATCTTGTTGAGGCTGTTGAACGTCACCGGCGCGGCCAGCACGGCATCGGCCCGGGGCAACGGATCCCGCTCACTGGGCAGCCGGGGCCGCACACGAACAGGGTGGCCGGTCCGATCGGCCAACACGTCGACCTCGACCCAGCTCGCGGCGGTCGGGCTCAGCACCACGCACACCTCCCACCCGGCCTCGTGCAGCAGCCCGACCGGTTCGGCCAGCTCCCGCACCGGCGGTGCGGCCGTACCGATCAGATA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTGCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-19.50,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 10 2830231-2829591 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 2830230 30 93.3 31 ............................CA AGCTTGTACAGGGTTTGATAAAGCAGTTCGA 2830169 30 96.7 31 ............................C. ATCTCGTACTCGCCAGCACCCTCGTCAACCA 2830108 30 93.3 31 ............................TC CCACTGGGACCGAGTCGAAGCCCACGCACGG 2830047 30 100.0 31 .............................. TGACCTTTTCGTATATCTTGCTCCGCACCGG 2829986 30 93.3 31 ...T.........................T GCCTCGCCCAGGTCCGAGCGGGCCGTTTTCA 2829925 30 96.7 31 ...T.......................... GCCCCACCGCTGGGGTAGTCCAGAGCCTCGG 2829864 30 96.7 31 ............................T. GCGATTCCTGGTCTCAAAATGTGTGGTAGCG 2829803 30 90.0 31 ...T........................AC CCCGAGCGCTTGCTCGCCACGCTCTGGCTGT 2829742 30 93.3 31 ............................TA GTCTCTTTCTATCTCTACCAACTCCAGCCTC 2829681 30 90.0 31 ...T........................AT CCCACCGGTGGCCCCGGCACCGCACAGCCCG 2829620 30 93.3 0 .........................G...T | ========== ====== ====== ====== ============================== =============================== ================== 11 30 94.2 31 GTGCTCCCCGCAGGCGCGGGGATGGACCGG # Left flank : CGGGCCGGTTCCGATCCGTCCGAGCTGGATCTCGTGGAAATCAACGAGGCCTTCGCCGCCGTGGGCATCGCCTCCACCAGGGCGCTCGGCCTGGACGAGGACAAGGTGAACGTCAACGGGGGCGCCATCGCGCTGGGGCATCCGATCGGGATGTCCGGGGCGCGGTTGGCTCTGCACCTGGCGTTGGAACTGCGACGGCGCGGCGGCGGTGACGGCGCGGCGGCCCTGTGCGGCGGCGGTGGCCAGGGAGACGCGCTGTTGCTGCACGTCCCGCGTGGCTGAGTTTCCTCGCGCGGTGTCTGGCGGGTCCCGGTCGATGGTCCTCGGCCGGGGCCCGTGTGCGGGGCGGAGGGCGCTGCCGGAGGTGAGGAGCTCGCTCGCCGCTGCCGCGAGTGCGGGGAAGGCGTTGTGGCCGCCGGATCGAGATGGCTAGGATGCGTGCGTTCCCCACCAGAGATCACAACTGGATAACGCTGCTACGAAGTCGCAGGTCAGTACGT # Right flank : GGTGGCCCGGTTTTAGGGGCCTTTCAGACTGCGGGGTGTTTGCGGGCGAGGATCATGCAGTGGTCGAGTGGGAGCAGGGCCTTGTGCATGTCGTCGCGGGTCTCCCACTGGATGTGGAGTGTGCGGGCTCCGTGGAGTCAGGCGAGGGCGGCTTCGACGACCCGGCGCAGCCTGCCGAGTCCGGACCCGTGGACACGTGTGCGGTTCCCGAGCCGGGGTGTGATGCCCTGACTGGTCAGGGCGTCACGGCAGGTGTGGGAGTCGTAGGCCGTGTCACCGAGCAGTTCGTCCGGTGTGGCCACCACAGCCGACAGGGTCTGCACCATCCCGGGCAGCTGTGTCAGATCGTGCCGACCGGCCCGGGGGAGCGCACTGCCCCCGGTGTGCCGACCGCCTCGGTGAGCACATGGTGTTTCGAGCCCGGTCGGCCTCGGTCAACCGGGCTCGGCCCCACTTGTGGGCTAGCACGTCCCCGCTTGGCCGGAACGGAGGACGAGTCC # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.20, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGGACCGG # Alternate repeat : GTGTTCCCCGCAGGCGCGGGGATGGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 2876272-2875573 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2876271 28 100.0 33 ............................ GGATCATTGTCGCAGGTCACCAACCGCGAGCGG 2876210 28 100.0 33 ............................ TTCTCGCCGTAAGTCTGCCAAGACATCTCAGTC 2876149 28 100.0 33 ............................ GCGCACGCGCACGCAAAGTGAAAACGTTGATGA 2876088 28 100.0 33 ............................ TATTGTGGGAGATTGATAAAAGGAATAGTTTGG 2876027 28 100.0 33 ............................ CAAATAAACGTCGGCGTCCCTGGCCAAATCAGT 2875966 28 100.0 33 ............................ CTCGTGGGGGTCACTGACGTACAGGTGTAGATA 2875905 28 100.0 33 ............................ CAAATAAACGTCGGCGTCCCTGGCCAAATCAGT 2875844 28 100.0 33 ............................ CTCGTGGGGGTCACTGACGTACAGGTGTAGATA 2875783 28 96.4 33 .........................A.. TGCGCGGTACGCAGATAGCCCACCGCAGCTTCG 2875722 28 78.6 33 ...T.......AGGC..........A.. AGGATCGGTCATGAGCAGTGACGCGGGGTCTGC 2875661 28 82.1 33 ...T.......AGGC............. TGCGGTGTTCAGTCTGGAGGACACGGCCGGGAC 2875600 28 92.9 0 ..............C..........C.. | ========== ====== ====== ====== ============================ ================================= ================== 12 28 95.8 33 GTGCTCCCCGCGCATGCGGGGATGGTCC # Left flank : GCGTCACGATCGGCACGCGCCTCGACCCGCACGCCCGGCAACCGGCGGCGGCCACGATGAGTGCCCCCGACGGGTCGGCTGTCGAGATCAGCCTCACCGCCTCCGACGACGGTCGTTATGGGGTTACCGGGACCGGCCCCACCGACCTGTGGGCTCCGGTCGAGGAGGCCCACCGGAGCTGGTTGACCCACGGCAAACCCGGGTGGTCGCGGCTGGGGCTGACCGTTGCCGAACACCGGCAACGGCTCTGGATCGACCACCCCGACAGCGCCGCCCGCTGGTCCCTGTAACCAGGAAAGAAGCACCCCCGACTCCGACAGAGTCCGGGACGGTGCGGAGTGTCCGCACCCGGCAGTGCGGCAAGCATCCGGTGTCACACCGGAACCCGCCCCACCCGCATCGCATGGCAACCCGGATACTGGTACCGAGCTCCGTTGTTTTTCGAATCAAAAGTGATTCCCACAGCGGGAAAGTGCTGTTAAGATCGCAGGTCACCAAGT # Right flank : ACACCACGAAGGATCCCGGATTGCTCCGAGTAGCACCGCGCCGAGTGCCCTGACCAGCCAGTGTGTCCCGTCCTTCTGGCCGCGCTGTGCTACTCGGGTTTCCTGTTCCCGCTGCGCCGTGGAGGACACAGTGGGCAGACCGTGTCGTCGTACGTGGTGGTGATCACCTCGGCGGCGGTGGCATCAGTGGTGCTGGGAACCGTGTGGCGGGGCGTCGATCTCGCTCCGGGCTGGGCAGCGCTGGGATGGCTGTTACTCGTGGCCGTGTGCGGCCAGGTTCTGGGCTGGCTGCTCCTCGCGGTGTGCCTACCTCAGTTACCCAGCCATGCCGGCGCGCTGCTGCTCCTGTTGACACCGGTCGGTGCCCTCGTTCTCGGAGCTGTCTTCCTCAGTGAACGTCCGACGCTGTTGCAGCTCCTCGGCTGTGCGCTCATCCTCGGCAACATCGTACTCGCCGCCGGAGGCCGCGCTTCTCAATCGCGAAGATCCGGATGAGCCGT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 3245884-3245327 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 3245883 29 96.6 32 ............................T AAACGACCTAGCGGATGAGACACCGTTTGAGT 3245822 29 100.0 32 ............................. CCAGACAGGCTAGGGACTACGGACACCCATGC 3245761 29 96.6 32 ............................G GCCACCGGCTCGTACATTGAGGTGGTTTCTTC 3245700 29 93.1 32 .........................G..T ACGAACCGATCTGTTCCACGGCGGTGCACCCG 3245639 29 100.0 32 ............................. GTCTACTCGTAGAGACTCCCATCGTTGGATGC 3245578 29 100.0 32 ............................. CGGGACGAGATGCCGATCTCGGAAGCGTGGGA 3245517 29 93.1 133 .........................G..A GTTTTAGGCAAAATTGGACAACGTACTCCCCGTACACGCGGGGTATGACACGAGAAAGCGCCCCCGGCGTGCCGGGGGCGCTGCTGTGTCAGCGGCTCACTCGAAGCGGTTGTTCTTGACCGCCTCGAGGAAC 3245355 28 65.5 0 ...G...A.T-..TG..........TGAA | T [3245336] ========== ====== ====== ====== ============================= ===================================================================================================================================== ================== 8 29 93.1 47 GTGTTCCCCGCGCGAGCGGGGGTGGACCC # Left flank : GCGGTTCGGTTCCGGGGGCGTGCAGCGTGAGGCGGGTACCCTCCTCGTCGATCTCCGGAGTGAGCACGGCCATCCGGGGGGTGTTGCGTTGGCTGCGGAACCCGCCGTGCGCGTCGGTGATCATGAGGCTGCGGTCGTGACGCAGTCCGGCGTGGGTGAGAAAACCGCCGCGTAAGGTGATTCCGGCGCATCCCTTGACCGGATAGCAGACGAGTTGGGTGATCTCGGCCATGCGCCGAGCCTAGTAGGAGACCGGGTTCCGGCGGGGCCTCGTGTGAGGTGTTCGTCCCGGCGTCGCGGAGCGAGATCGCGGGATTCCGTCCACAGGGGACTTCCACGGAAGAGTTGCCACGCACGGGAGCCTCCACTGTGTCCAACGAGGAGTGGGCTCGGGTTCCCGGCCGGTGTTGTGGTTCTTCGGCGGGTGCGCCTAGGATGCGGGCGTCATCACGAGAGATCACAACTGGATAACGGGGCTGCGAAACCGCAGGTCAATACGT # Right flank : GTACCCGAGGTCGCGGTTCTTGGTGTCGCGCACCGCCGCACCGTCGCCGACGCGGCCAACCTCGACGCAGCTGGTCTGTTGTTGGGAGCGCGTCGACTTGCGCCAGCCTTCGGGGTGTACTGTCATGCTCGTCCTTCCAGGTCGTCCCGTATTGTGGCGATGAGTTCGGTCGATTCCTCTGGGCTCATCGCCAACTGTCGCAGGGTAGTCGCCGCCTTTTCGTAGGCGATCACGTCCTTGCGTTTGTGCAGGAAAGCATTGGACTGGAAGTGTTCGATGTGCACGATCGGTGCTGACTTCGGGAAGTTGAACAGGATGAACGACCCAGCGTGAGCGGGGTGCCAACGGGTGCTTCCCGCTGGAAGGACCTGAACGGTGATGTTGGGGCGTTCGGCCATCGCCATGATGTGGTGGAGTTGGTCGGCCATCGTCCTGTACCCACCGAGTGGTTCGCGAAGTGCGACTTCCCAGATCAGAGCCACGAACTCGGGGGCGTTACG # Questionable array : NO Score: 4.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.41, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.60,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 3335445-3335233 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3335444 29 100.0 32 ............................. TACGGCGCCGTGGCTTCGCAGGAGGAGGTCAA 3335383 29 100.0 32 ............................. CACACGGTGCTGTGGGACAGCAGGTGGCGTCC 3335322 29 96.6 32 ............................C CCATCGCCCGATGAGCAACAGCTTCTCACTGC 3335261 29 93.1 0 .........................T..T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCAGGCGCGGGGATGGACCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNTCCGCGTTGTCCGCCGACGATCCGATCAACATCCAGTACACCTCCGGAACCACGGGTTTTCCCAAGGGGGCGACGTTGTCGCACCACAACATCCTGAACAACGGGTTCTTCGTCGGCGAGCTGTGCGGTTACACCGAGCGGGACCGGGTGGCGATCGCGCCGCCCTTCTACCACTGCTTCGGTATGGTGATTTCGGGAACTAGCGAGAACTGACGTCGGCTAGTTGTTCCTGCGCACAAGGGGTTTCGTGGGTATGTGGACTAGCCGCTACTAGCTCTGGCTAGCGGGTTCTGCCCCACATGTGCCCCACGTTCAGTCTCTTGTGGACAGAAATGTCCACTGTGTTTCGATTGTGGGGGAGAGGGCTCGGAGCGCGAGGTCAGTGTTGTGGCTTTCGGGTGGGTATGCCTAGGATGCGGGTGCCATCGTGAGAGATCACAAAAGAATAACGGAGCTACGGAGTCGCAGGTCAGTACGT # Right flank : TCGGCCTGCTCCTTCGGTGTGAGCGTGTGGCCGTGCTCGCGGCAGGTGTGGGGGTAGTAGTCCGGGTGCCCCTGTCGTGTGGGAGGGGCGTGCACGTGTCCGTGTGGTCCCCGTGTGTGGGGAAGAGTGCGGGCCCCGGCCAGGGGTGGCCGGGGCCCGGTGTGTGGGGTGGGGTTAGCGTCCCTGGTTGGTGGAGGGGCCGGTGCGGAGTTTGCCGGTCACTCGCGGGAACTCCTCACCGTCGTTGTGTTTGCGTTCCAGGCGCTCGACCTCGCGTCGCAGTGCGTGCTCCACGAGGTCGGACATGCTGGCGGTGTGGGCCACGTGGCCGCCGAGGGCGGCCACCGCGGCCTTGGCGCGCTCGATCACGTCCTCGGAGACGTACGGGGTCATGGCGCGGCGGGTCATCGTGTCACCTTCATGCGTACTATTTCGAGTGCTATGGAGCCTACGGCGAGCATGCCCATGATCCACAGCACCCATGTCCACGTGCCCAGCAC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 3759922-3759368 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3759921 37 100.0 36 ..................................... GCGGGAGGCCCAGGAGCGGTCGCGGCCGTGCAGCTC 3759848 37 100.0 39 ..................................... CGTGGCGGTGTCCCAGTCCCCGGCAAGCCAGGCGTCCCG 3759772 37 100.0 37 ..................................... CGCACCCCCACAGGGGTCCTCGCGAACACCCCCACAG 3759698 37 100.0 35 ..................................... GCGTTGGTGGCGCTGGGGCTGGTGCTGCTGTCCCG 3759626 37 100.0 36 ..................................... CAGCTTTTGCGTGCTGACCTGGGAAAACTCGACCTT 3759553 37 97.3 38 ..............G...................... GGGGAAGCGACGCTGTACGAGTACAAGAAGTGCACCGA 3759478 37 100.0 37 ..................................... GGGTTCAGCCCGACCGTTTCCCACTTGGCGCCGCCCT 3759404 37 91.9 0 ..........................C..G......T | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 98.6 37 GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Left flank : CACTGCGGACACCCCGGCTTTGTTGTTCGACCCCGAGGGCGACCTGTGGTTCCCCGCCTCGGCCTCCCTGCCGCTCGACCAGGCACGCCAGGCCATCACCGAGTACTGCCGCACCGGACAACGCCCGAGCTGTGTGCAATGGCAACCCGGCTACTGGTACTGACCGCCGCTGCTTTCCGAACCAACAGTGATTCCCACAGCGGGAAAGTATTGTTAAGATCGCAGGTCACCAAGAGTGCTCCCCGCAGGCGCGGGGATGGACCTTGTTCGAGGGCTTCGCCGACGGTTTTCAGTTCGTGCTCCCCGCAGGCGCGGGGCCGTGGTGGGCCGGTTTTAGGCAAAATCGGGACATGTACCCCGCGTAGACGGGGGACTCGGTGGTTGGGGAGGGGAAGTGTGTGGCGACACGCCGGGAGGTTCCCAAGCCTCTGCTCGGCGTGTCGGTCACGGATCGGTCACAGCCGGGATGTGGATATCCCGGACATCCCTGCTCATCTGCC # Right flank : CGGCCCGCTGGTCAGTGACCCCGGCTGGCCGGACTCACCCGGTGGGGCTGGGCTCGGTGACCCGTTCCACGACCCCTTTCTCCAGGGTGACCCGCACGCAGGCGGCGGCCAGTCGGGCCAGCTGGGAGTCGTCGACCAGCTCCGCCAGCCGCGCCGCCTCGGTGGGCAGCCCCACCCGTCCGGCACCGGTCAGCGCCTTCTTGTCGAAGTAGGGACGCAGCTCCGGCCACACCTCCTGCGCCTCGCGGCAGAAGATCTCGGCCCCCACCGGCCCCAGCCGGGGGAACTCCCGCAGTCCGGCGCGCAGCTCGCGGACGTCGCCGTCGGCCTGCCGCCGCAGCCGCCGCAGATCGCCCCCGTACTTGGTGCGCAGCAGCTCGGCCCCCTCACCCAGGGCGGTGGCGGTGCTCTCGTCGTAGCGCACGTAGTGCCCCCTGCCCAGGGCGTCCACCCGTTGCTGCCACCCGGCGGCCAGCATCCGCTCGGCAGTGCCGAACTCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGCCAGCCCTTCGGGGCTGGCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-17.40,-18.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 15 4153057-4152844 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB913024.1 Actinopolyspora mortivallis DSM 44261 strain HS-1 ActmoDRAFT_scaffold1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4153056 29 100.0 32 ............................. CGGCTCATAGCCGAACTGCGGGTCACCCTCCC 4152995 29 100.0 32 ............................. AGGCGGGCTGCGCGCTCGTCTACGGAGCTACA 4152934 29 100.0 32 ............................. ACGAACCTCGCGGGCATTCGTCGAACACCCAA 4152873 29 96.6 0 ...........................T. | A [4152848] ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCCCCGCAGGCGCGGGGATGGTCCC # Left flank : GTCACCGCTGTGCTCGACAGGACGTTCCACTACGCCTACGACCCCACGGAGCTCGATCAGCTCATCACGCGAGTGATCGAGGCACCAACACACGAAGTCGGTCTGTGCTACTCCTGGGACCGCCCGTGCCGATCATGGCGCGCCCCCGAAGGAGAGGCCTTCCCCGAACACTCCCTTCGTGTCGCGACCGACCCCGACCGCGAGATCGGCGCGCTCAGCTATCACCACTACCAGCACGAGCTCCTCGACTCCCACAACCCCGCAGCCGGCGAGGAGACACCCCCGCTGCTGTTCGACCCCGAAGGTGACCTGTGGTTCCCCGCCTCAGCCTCGATCCCCCTGGAGCAAGCACGCCAAGCCATCACCGAATACTGCCGCACCGGAACCCGCCCCACCAGCGTCGAATGGCAACCCGGCCAGTAGTACTGACCACGCCCTGCCCCGAACCAACAGTGATTCCCACAGCGGGAAAGTATTGTTAAGATCGCAGGTCACCAAGA # Right flank : TCCGAAGGGACCGGTGGAACCCGGTGGTTCAGGAGGCCGGACTCGACGGCCTGACTCCGCATGACCTCCGCCACACCTACGCCTCGTGGCTGCTCCGGCGGGGTGTGACGGTCGAGCAGGTCTCGGAGCTGCTCGGGCACTCGACGATCACGATGACCCAGCGGTACGCCCACCTCGCCGACACCCAGTGGGAGGCCGTGCGGGCAGCGCTCGATGGCAACGAGGACAACGTGCGTGGCGAGGCTGCCACGCACGGACACCGATCCCGACCAAGCCTCGGTGATCGACCTGGCCTCCCGTCGCGGGTCAACGGGACGATGACGGTGGCTTCCCCGGCAGGACTCGAACCTGCGACCTAGAGATCAGAAGTCCACCATGCCGCCGATTGCTCCCGGCCGTTTCCTCCTGAACGACCGAGGACCCACCCGTTCAGGAGGTCCTCCGGGTGACCGGGGCGGCGAGCTGTTCACCGGCGACCTCGCGATGGCCACGCGGCGCCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //