Array 1 90641-89613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMT010000003.1 Anaerostipes hadrus strain DFI.4.141 IDAEDEHK_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 90640 32 100.0 33 ................................ ATCTAACAGATATTTGCTTTCTCCTCCAGCAAG 90575 32 100.0 36 ................................ AGAAGATGTCAGAAAGTCCATGGAAGATGAAACAAC 90507 32 100.0 33 ................................ TCAATCAACGGAAGTGATGCACCACCAGGATTT 90442 32 100.0 33 ................................ AACATCTCGTAGCTTTCCGTACTGACCTCTTAC 90377 32 100.0 34 ................................ TGCCATTGTTTCCTCCTAACTTATCGTAATTGTT 90311 32 100.0 34 ................................ CTATCCTCCTATCATTTTTAACAGTGTTTTATAA 90245 32 100.0 35 ................................ TTCTTAATTGGATCAATAAATGGTCGTTTTGCCAT 90178 32 100.0 33 ................................ ACTTTTCCTCCGGATTTCATAATTTTGAATGCA 90113 32 100.0 34 ................................ AAGTGAGGTTGTAAGATTAAGGTTCCCCAAATTT 90047 32 100.0 35 ................................ AATGTGTGGACTTACAATAGATTCAAGGCTGAAAG 89980 32 100.0 35 ................................ CTGTCACAAGTTTTGCAAAATCTTCTACAGATTCC 89913 32 100.0 35 ................................ TATACAACGCATCGGTTGTACCTTGCTAAATACCC 89846 32 100.0 37 ................................ AATGTAATGAGCAGGAATCCATGTTGCACCAAGTTGT 89777 32 96.9 35 ........T....................... AAATCATACAAAGTAAAAGTAACTGCTTCTGCTCT 89710 32 100.0 34 ................................ AATTTTAAGACATAATCCGACCAATTCCCCACTT 89644 32 75.0 0 .............CAA..A..CA....C..T. | ========== ====== ====== ====== ================================ ===================================== ================== 16 32 98.2 34 GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Left flank : ATCCAGCATTTTTGTGGAAATGAGGTGATAAAATCAAATGTTAGTATTAATTACTTATGATGTAAATACAGAAACAGCAGCAGGGAAAAAGAGACTGAGAAAAGTGGCAAAGCAATGTGAAAATTATGGAAGGCGAGTACAAAATTCTGTATTTGAATGCATTGTTGATAATGCACAGTGTGTGATGCTAAAAGCACTCTTAAATGATATCATAGATGAAAATGTGGATAGCTTGCGTTTATATTATTTAGGGAATAAATATCAGACTAAAGTAGAACATTTTGGTGTAGACAGAGGAATACAAGTTGATCAACCATTGATTTTATAGTGATGCGAGGATATAGCAAACATAAAAAGAGTGGGAGATTCGCACTTAAAATATGAAGTAAAAAATAAATTTGTATCTAAAAATAAATAGTATTTGAATGATTTGTAGATATAAGATAAAATTTATTAGTGATATTGAACAAAAAATTAGAAAATTATTGGTTAATATTGCT # Right flank : ATATTTTACTTGGTGTGGGTTATATTAATATTTATAAATTGTCATCAATATTGTAGTAACGATAAGCGGATATACATACAATGGAAGCACAAGAAAGGAAGAAATCAATGAAACGATGTAAAATTACCGCAGTACGGAAAACAGAATATAAAGATCTAATGGAAAAGTATGAAAATCCAATCCAGCATGCCTGCGATATAGAAGAAGGACAAGTATTTATCACAGAAGGATGGAAACGACCAGAAGGATTTTGTGAAAGCGCATGGGAGAGTATTTCACCATTTGTTATGACATTAGCATATGGAGGCAGTGATATTTATGAAGGCTGGATGAAAAACAAAAACTCAGCGATGATCAGTTGCAATGACGGGTTTAGACCGGTAAGTTTTTACATTGAAGTGTTAGATGAGAAAATATATTAACGAGGAGATAAGAAATTTAATATCAACTCATAAATTTCCTAATATCTTCCAAAATAAAAGTAAATTCGATAACATGAG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCGTGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1104-475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMT010000057.1 Anaerostipes hadrus strain DFI.4.141 IDAEDEHK_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1103 30 93.3 36 C.....G....................... CAAGCTTTCAAGAACTAAATCTAATAAACTTAACTG TAA [1085] 1034 30 100.0 36 .............................. ATTAGTTCGCATCGTTTTGACTGCTCCCGTTGCAAG 968 30 100.0 34 .............................. CACTTAGGAAACTACAGGACAGCCTGATTCCAAT 904 30 100.0 35 .............................. AAATAAGAATTTATCGAACAGATCTGTTTTGACAG 839 30 100.0 38 .............................. TGGCGGAACTGTATAATGTTTAGAAAGGGGTGTAGATA 771 30 100.0 37 .............................. ATGCACCCAGTTTTGTATCATGAATTTCTAAACCATC 704 30 100.0 38 .............................. TGCTTTGAAAAGCTCTGGAAACAGTACCCGAATAAACG 636 30 100.0 36 .............................. CCGATGGCTCTTTCCTTCCATGCGGATCACATTCAC 570 30 100.0 36 .............................. GTAAATGCAAAACATTGCACTGACACTTTTGAAGTT 504 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 36 ATTTAAATTCCATTATGATTCTATTAATTC # Left flank : CTGATGCGAAATTGCAGATTTTGTTACCCCAAGTAGCACTGCAAGATCACATACACACATCTCACTCTGTTCTAGAGCGTGTAAGATTTGTACTCTAGTTCCATCTCCAAATAGCTTAAACAAAGAAGCCAACTGGATATAATCATCTTTTGGCTGCATCTTGGATTTCACATCATTCACAATATCCTCATGAATTACATTGCAATTACAAATATAAGACGTTTTTGGCATATATTCACCTCCAAATAATAATAGTTGAACAACTACTCAACTATTATTATACTTATTTTTAAATTTATGTCAATAAGCTGATGTTAGTTCCCCATAAATTTTACAATTAAAACCAGCTCTTTATTCTTTTCTTTATCACATCTCATTTCTGGATTAAACGCTTATTTTAATTATCAGATTTTTCCTTCTAATCTATATTCTTAAGGTTCCAGTTGACTCATTTGGTCCCAAGTGCCTTAAGATTTCCAACCTGTTACATTGAAATCCAT # Right flank : CCCGTCCCAAAATCATCCCCTTATTTAAGCCAAAAAACGTCTCTATTTTGTCGACCTCTTCAAAATTCAACATTTCTTTCTTGTCCCTAATCATATATTTCTGCAACACCTCCTATTTTAGGCGTTTCCGCCTTCTGTCGATCCCCTATATTTTTTGCACTATCAGGGGTCGACAGAAACCCCTAATTTTTCAAGTTGATTTTGTTCGACACATTCTATTATGAAACTTATTTGCTAAATATGCAAGTTAAATACACGCATTCATTATATATACTTTTCGAGCAAACACTATACAGTCATATATGCATCAAATATCACCGTCTGAATAATCCAATTTATCGTCATTTTTATAAAAGTCATGCCCACGCGAGAAAATTTCCGTGGGCATGACGTGGGCACAGCTATTTTTAGGCTTATTTTCAATCAAAACCACCGGCTTAGCCGGTGGTTTGTACTAGCCCTATAAGGGCTTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCCATTATGATTCTATTAATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //