Array 1 4505-4841 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLV01000275.1 Streptomyces sp. ST5x T5_R1_mto_contig_275_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4505 29 86.2 32 GCCA......................... ATCCTCCCCAACCGCGTCTGGCGCGGGATCCG 4566 29 100.0 32 ............................. TCGATGGGCGCGTGCTGGACCAGGCGGACATC 4627 29 100.0 32 ............................. CAGTACAGGGCGCGGGTGCATTTCGGCACGTC 4688 29 100.0 32 ............................. GCAGGCGCGATGGGCATCGTGATGGAGGCGCT 4749 29 89.7 34 .........................GGT. CGGCGACGAGCCCCAGTTGCCGGCACAGCCAGAC 4812 29 86.2 0 ........T.............C...T.G | C [4837] ========== ====== ====== ====== ============================= ================================== ================== 6 29 93.7 33 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCAGCGACTTCGGCGGCGGAGACTTCGGCGGAGGCGGCGGTTTCGGCGGCGGGGACTTCGGCGGCGGAGGCTTCTGAGGTGCCCCCGCCCCCGGCGGCGGCCCAGGTGCGGGAGACCGCCCGCGCCTGGGCCGCCGCCATCGTCGCCAACGACCCGGCCCGCATCGCCGCACACATGGCCGACGACTGGATCATCGTCTCCGACACCGGCCCCACCAGCCGCGATCAGTTCCTCGCCCTGATCACCTCCGGCCGCCTCACCCACTCCGCCATGGACACCGTCACCGCCCCCCGCGTCCGCGTCCACGGCGACACCGCCGTCCTCACCGCCCGCGTCACCAACACCGCCCACTACGAGGGCGAGACCTACCCCGCCGACGAATGGACCACCGACGTCTTCGTCCGCCAGGGAGACGGCCGCTGGCTCTGCGTCCTGAGCCACATCACGACGGCGACGGGGGAGTGAGGCGGGTCGGCGCCGGTGGGCGGGGGCCGGTGGCG # Right flank : GTCCTCAAGCCGTCGGACACGGCGGAGGCGGCCCGTACCATCGCGGACGGATCTCTGTCGGCGAGGCGGCCGGGGAGGCAGCGGCCGTAAGGGCGACAGTGGTCTGCCCACCGGTTGGCTGTCGTGTGTGAGCCCCGACTCCCGGACCGACGACCGGGGTCCTCCCCGGCCGGCCCGGAGCCAGCCGCTCCAACTGCCGTACTACGCCGCCGAGGGCACCGTCAGGAACGCGGACCAGGCGGTGGGGGAGACGGTGAGCATGGGACCGGCCGGGACTTTCGAGTCGCGGACGTGCACGGCGCCCGGGTGCGCGGCGACCTCGACGCAGTTGCCGCCTTCGTCGCTGCTGTGGCTGGACTTGTGCCAGTCGTAGGCGACCTCGATGCAGTTGCCGCCCTCGTCGCCGCTGTAGCTGGACTTGAACCACGAAAGTGCGGGTGTCATGCCTCTCCTGCCAGGTCGTCCAGCAGGTCCTTGCTGTCCTCGGTGTTCAGGGCCTG # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2233-4152 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLV01000147.1 Streptomyces sp. ST5x T5_R1_mto_contig_147_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2233 29 100.0 32 ............................. AGACCGCGCTGCGCCGTGCGATCCACGCCCTC 2294 29 100.0 32 ............................. CCGCCTTAGAAGCGGAATTCGCTCCGCGAATT 2355 29 100.0 32 ............................. CCGGACGGTTCGACGCCGGGGTCGGGCAAGCC 2416 29 100.0 32 ............................. ACGGGGAGAGCTATCTGCGGTTGCCGCCGCTT 2477 29 100.0 32 ............................. GCGGCCTGACCATGGGAGCAGCACTGCATCTC 2538 29 100.0 32 ............................. TCGTCGTCTCCGGCGGGCCCCACCCCGGCACT 2599 29 100.0 32 ............................. CACTGTCGAACATCGCCCCGGGCGATGTCGTC 2660 29 100.0 32 ............................. TCTTCCGGGCCGGCGAGAGCTTCGATGACGTC 2721 29 100.0 32 ............................. TTGATCTACGCCTCGCAGGGCTGGAAAGCGTG 2782 29 100.0 32 ............................. CGCAGGCGGAGGCCCTGGCGGAGGTCGCGCGG 2843 29 100.0 32 ............................. GCATCGACCCCGGCGCCATCCCCGCCGCCTGG 2904 29 100.0 32 ............................. ACGCCCCTCCCGGCCGTAGCCAGGAGGGGCGT 2965 29 100.0 32 ............................. GCGGCCATGGCCGCCCGGTACCCGGTGAGGCT 3026 29 100.0 32 ............................. ACAGAATCGCGGCCCTCGCGCGGGCGATAAGG 3087 29 100.0 32 ............................. AGCCTCGACGCCCCAGGGCTGTCGACGCGGGT 3148 29 100.0 32 ............................. CATCTCACCGACTCCGAGGCGTCCGCCGAGGC 3209 29 100.0 32 ............................. TCAGGCCGAATGGGCGCCGACTCCTGGGGGCA 3270 29 100.0 32 ............................. GTCCGCATGCACGCAGGCCTGAGCACCACCGA 3331 29 100.0 32 ............................. ATGGTCCAGGCCGGCATCCTTCCCGCGGATGG 3392 29 100.0 32 ............................. CCGCTGCCGGAGCAGGCGACGGCGGTCGTGCT 3453 29 100.0 32 ............................. ATCCACTCCGTCCTGCTGGCCGCCAAAAGGCC 3514 29 100.0 32 ............................. CCACCGAGGCGGACCTGCAAGCCGCCATCGGC 3575 29 100.0 32 ............................. ACCATCACCGGCGGCACCATCACCGGCACCGA 3636 29 100.0 32 ............................. CTCTACACCCGCGCCGGCTACAGCGAGTCCCG 3697 29 100.0 32 ............................. ACCCGCAACCTGCGCGGCTTCGTCAACGCCCC 3758 29 100.0 32 ............................. GCCGAGCAGCGCGAAGGCCTGGAGTACGAGTT 3819 29 96.6 32 .......T..................... CTAGAACCCGGCTACGTCCACGCCCTGGTCAC 3880 29 96.6 32 .......T..................... CTAGAACCCGGCTACGTCCACGCCCTGGTCAC 3941 29 100.0 32 ............................. GTCTTCGGTGCCGCGCCGATGCGGCAGTGGCG 4002 29 96.6 32 ........T.................... TCACCACCGTCCAGGGCACCGTCACCCCGGCC 4063 29 100.0 32 ............................. TCCACCACGATCACGGTGAACTACGTGGTCTG 4124 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Left flank : ACAAACCCTCCTCACCCCACCCGCAGCCACCTCAGACGGGCAACCCGGCGACGACGAGACCGACGACGAACCCACTGAGCGCCGAGACGTGCACATGGTCCATCTCTGGGACCCCAAGACAGGCGCACTGCCCGCCGGCGTCAACTACGCCACCGGGAGCGACTGATGCCCTCCATGGTCGTCATCGCCACCACCGCCGTCCCCGACCACCTCAGAGGCGCCCTCAGCCGATGGACCAGCGAAGTCACCCCCGGCATCTTCGTCGGCAGCGTCTCCGCCCGCGTCCGAGACGAACTCTGGCGCGCCGTCACCGAAACCGTCGGCAACGGAGCAGCACTCCTCATCCACCCGGCCCCCACAGAGCAGGGCTACGCCATCCGCACCGCCGGCACCCGCCGGAGACTACCCGTCGACTTCGACGGGCTGACACTCATTCGCATGGCCGGCGCACCGAAGGCAAAGGAAGTGTAAAGGGCTCCTGAAGCCGCAGGTCAACAAGA # Right flank : GCCGATCACTCGCTTTTCTCGGTCGGGTTCGCGGCGCGCCCGCGGCGCGGGGGACCGGCGAGGTACGAAGGTGGCTCAGCCGTCCCCTCGCTCGCGCCCGTCGTCTGAGCCGCCTGGTTATCGAGGCCAGTTGTGATGGGCTGGCAGGAGCTGGTGGCTTTCGCGGCCGAGTACGCGTGAACGTGAACGGCCGGCACCCTCAGTCCGCCGGAGCGGGTGGCACGGGTGCCGGCCAACCCAAGAACACATTCCCCGAGGGGTCCGCGTCTCGTGGTGGCGAGTGTAGCGGCCGGGCGGGCCGGTAGGGTGAGCCGATACCGTTTTCTTGAGTGGTTCGGTTGCTGCTGCTGAGGAGTTCTTCTCGTGATCCGTGTAGGACGTGGTGTGCGTACGCTGGCTGATCTGGCGAAGCAGCAGGGAGTGGCTCTCCAGACGTACCGCAACTCCCGGCGCCACCTGGCCGAGGGGTTCCCGGCGCCGGTCACCTCCGGCAGGGTCCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-5737 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLV01000086.1 Streptomyces sp. ST5x T5_R1_mto_contig_86_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================= ================== 1 33 84.8 28 ........................C....AATC CGCAGATCTGGTACCTGGGGTCGGCCGG 62 33 93.9 27 ........................C.....C.. CAAGCGCGGCGGGCCCTCGCCCACCAC G [91] 123 33 87.9 28 ........................C.....CTT TCCCCACCGCCCCGCCGTTCCCCGGCAG 184 33 87.9 28 .............................TCCA CGATCTACGTGTACGACGAGAACGGGAA 245 33 93.9 28 .............................TC.. AGGTGAGCCAGTACGCGGTTCCGGGCGG 306 33 93.9 27 ..............................CC. CGTGGCCGAGGCGCAGCAGTCGACGCG G [335] 367 33 90.9 28 .............................G.CC CGGCGGGGGTGACCGGGCTGGAGCTGTG 428 33 93.9 27 ..............................CA. GTTGCGCGCCACGGCTACCGGCCGGTG G [457] 489 33 87.9 28 .............................TCCT CCACGATCTTGCGGGCCTCGAACTCGTC 550 33 87.9 28 .............................TGCC GCCACGTGGTGCGGAGCATGTTGACGTC 611 33 93.9 28 .............................G..C CGTCGGGGTAGGGGCCCTTGGCGTCGTA 672 33 93.9 28 ..............................G.T TCGCGCAGCCGCTGGTGGTGCTGGCCGG 733 33 90.9 28 .............................GA.A TGGCCTCCCGCTGGAAGGTGGCAGTGGC 794 33 87.9 28 .............................GACC CTTCCGATGTCCCAAGATCAGCGCGTTG 855 33 87.9 28 .C............................CCA GCGCGGCCAGGTGCTTGTTCTCGTGCTG 916 32 87.9 27 ......T...............-......GG.. GGGGGCTTCGTCGCCGTGTGCGGGCCG G [929] 977 33 84.8 26 ...T..............A.....A.....CC. TCTGAGGATTTCCGAAGCTTCGGAAA A [1006] 1038 33 87.9 27 ...........T............A.....CC. CAGGGTGACCCTGGCGACCCGTCACGA G [1067] 1099 33 84.8 28 ........T.......A......T......G.T CACCCCCGCCGCCACTCCGGGATGCGCG 1160 33 93.9 28 .......................A......G.. CCGATGCTGTTCAGGTCCGGGCGCATCC 1221 33 87.9 28 .C......................A.....A.C CACAGCCACTGCGCGGGTGTCGCGGCTG 1282 33 87.9 28 ....A...................A.....C.A CGATGTGCCGGACCTGCTGGAGCTGTGG 1343 33 90.9 19 ....A.............A...........A.. TGCCGGACGCTGCCGAGGA AGCCG [1367] Deletion [1395] 1401 33 81.8 28 ...G...A.C...C..........A.....C.. GGCGGGGGGTGAGGGAGGAGTTCATCGC 1462 33 87.9 28 ....A...................A.....G.C TCGGGGAGCGGCACTGCACCGCGCTGGC 1523 33 90.9 27 ....A...................A.....C.. GACGCTCAGTGCCACTCAGGTCCCGCT A [1552] 1584 33 78.8 28 ....A...................A...AGCCC CCCGACAACTGGGTTGTTGCCGGGGGGC 1645 33 97.0 28 ........................A........ GTCGTTTCCGGCCGCTCGGCTGGTACGG 1706 33 87.9 28 ........................A....GA.C ACCAGGAGCCGATGCTGGACGTGTCCCA 1767 33 84.8 28 ...A....................C....GCC. AGGAAGCGCTGCTCGGGGCGATGCTGCA 1828 33 97.0 26 ........................C........ CCGCTCTTGGCCGCGTCCGCCAGCCA TC [1857] 1889 33 84.8 28 ........................A....GACA TCATCACGACCGTCGAGGCTGCCATCCC 1950 33 84.8 27 .C................A.....A....T.C. AAGGCGACTTCGACCCGGCGAAGTTTG 2011 33 90.9 28 ........................A....TC.. CCGGGGTCATGCAGGGGGGCAGGTGGCC 2072 33 97.0 25 .............................T... CGGCGCCGTCGGCGAGCGACTCGGC ACC [2101] 2133 33 90.9 29 .C...........................T..T CGACCGCGGGCATGCCGTGCCGGCGGGAG 2195 33 93.9 28 ........................A......C. GGACGAACTGATGGACGCGCTCACCGAC 2256 33 90.9 28 .............................AG.A ACTCGGGGAGGAGGGCCTCCTCGAACGC 2317 33 90.9 28 ....................A.........C.A GCAGGGCGTCGAGCATGTCCTGCTCCAA 2378 33 87.9 28 ........................A....TG.T CATCGAGCGGGTTGCCGACCAGGCCCCG 2439 33 84.8 28 .C......................A....TCC. TAGTCGAGCGCGCCCTGAAGGAACTGTC 2500 33 90.9 28 .............................T.CA ACCCGGGCTTGTCGCCGTCGGCCACGTA 2561 33 93.9 28 ..............................A.A TCTGGACCCACGTCCACGACGCGAACCG 2622 33 87.9 28 .............................AACA GCAGCAGGTACTCGTCGCCGTCCCAGTC 2683 33 97.0 28 ..............................C.. CCCTGGCTGCGGCGGGTCTCATGGCGCC 2744 33 100.0 28 ................................. AGCCGACGAAAAACGACGGGTCGACCCG 2805 33 100.0 28 ................................. AGCCGACGAAAAACGACGGGTCGACCCG 2866 33 87.9 28 .............................ACCC TGTCCAACGCCCTGACCGCCCTGGTCAA 2927 33 87.9 28 ........T....................AG.C GCTGCGCGGCCTGACGGAGGTGCGGTCG 2988 33 93.9 28 ........T.....................C.. TGTAGGGCTCCCCGCCGCGCAGGGTGAC 3049 33 97.0 28 ........T........................ AGATCGCCCGGCAGGCCGCCCTGCGCGA 3110 33 90.9 28 ........T......................CA AGGCCCGGCTCGGAGTCGAGGAGAAGAC 3171 33 87.9 28 ........T....................TCC. CTAGCTCGCTAGGGTTCATGCTGGTGAA 3232 33 90.9 28 ........T....................G..C CGAAGCCCTTGCGGACCGCCAGGTCCCG 3293 33 84.8 28 ........T....................GACA GCGCGGGCGAGTCCACTCCGGCCGGGCC 3354 33 90.9 28 ........T....................G..C CGAAGCCCTTGCGGACCGCCAGGTCCCG 3415 33 90.9 28 ........T....................GC.. AACAGGCACCGCAGCCGGAGCCGGAGGA 3476 33 93.9 28 ........T.......................C TGCGGGTGTACCCCGTACGGGACTCGTC 3537 33 93.9 25 ........T.....................C.. CGGCCGACCACCGATGGGCCATCGA GCC [3566] 3598 33 87.9 28 ........T....................T.CT TCACCGTCTGCGGCATGCCGAGATCCGC 3659 33 87.9 28 ........T....................G.TC CCGTCGGAGTCTCAACGCCGCCGTACTA 3720 33 97.0 28 .............................G... CCGCGATCGTGGCGGCCGCCGACGCCCG 3781 33 90.9 28 ........................A.....C.A GGCAATCCGCGCACAGGTCCTGCGCCAC 3842 33 93.9 34 ...T..........................A.. CGCGGTCCCGGCGGCGTTCGTCGCGTTCGTCCTC 3909 33 93.9 28 ...T.........................G... ACGCCATCCTGCCGAACGGCGTGCGGGT 3970 33 90.9 26 ...T....................A.......C CGCTGGATCAGATCCGGCAGGAAGTG AC [3999] 4031 33 87.9 29 ........................A....ACC. CAGTACCAGCCGCCCCCCCGGACCCTGCG 4093 33 87.9 28 ........................A.....CCC GCGTCAGCGGGTCGTCCCGCACTGTGTC 4154 33 90.9 28 ........................A.....CC. CGCCCACCTCCACGGCCAGCCCATCCCC 4215 33 87.9 28 ........................A....GA.A TGGAGCAGTACGAGACCGGGCCCGAGGG 4276 33 84.8 28 ........................A....TGCA CCAACCCGGAGTGCCCCGGCCGGTGCAG 4337 33 87.9 28 ........................A.....CCC CGCCGGCCTCTCGGCAGGCGGGGGCTTT 4398 31 84.8 28 ....................--..A....TC.. TGACGGTGAGGTTGCCGCCGCTCACCGT 4457 33 87.9 28 .............................TCCC CCAGGAGCCAGGTTGCGAGGTAGGACCC 4518 33 87.9 28 ........................A....GA.T TCGAGGTCGTCATCCGTGTCTCGGGCAC 4579 33 90.9 26 ........................A.....CA. GACTCCCTCATCACCTCGCGCGCCCA GC [4608] 4640 33 90.9 29 ........................A.....AC. AGGCGCACGGCACCCACGTGTCGATGCGG 4702 33 90.9 27 .....T..................A......A. ACGCGAGTGCGGGACCGTCGTTGACGC G [4732] 4763 33 93.9 28 .....................A........G.. CGTCGGTGAGCCGCTGTACCTCGCTGGC 4824 32 90.9 28 ..-...........................CC. TCTGCTGCACGGTCACTGTCGCTCCTGG 4884 33 87.9 28 .............G................GCA TGCCGTCACCGTCCTCGATCGTGAGGAC 4945 33 93.9 28 .............................G.C. CTGCCGACGAAGCGTCGGCCGGCGTCCC 5006 33 90.9 27 ........T....................G.C. TGCGGCACGGGCGGTTTGGTCCCGGGC G [5036] 5067 33 90.9 28 .............................A.CC TCGGCGCGGCCGCCGGCGTGGAGGGTGC 5128 33 90.9 28 .C...........................T..C GCAGCGCGGGCCCGGCGGCGCCCGCCAT 5189 33 90.9 28 ........................A....G..T AGGCGAAGTACTTGTAGGCGACGAGCAG 5250 33 87.9 28 ..T...........................CCA GCGCGGCCAGGTGCTTGTTCTCGTGCTG 5311 32 90.9 27 ......................-......GG.. GGGGGCTCCGCCGCCGTGTGCGGGCCG G [5324] 5372 33 84.8 26 ...T..............A.....A.....CC. TTCTGAGGATTTCCGAAGCTTCGGAA A [5401] 5433 33 87.9 28 ........................A.....CCT CACCGCCGACGACGTCAGCCTGCAGGCC 5494 33 84.8 28 ........................A....ACCC CATGGTTCCGCACCGCCTGGAGCTGGGC 5555 33 93.9 55 ........................A.....A.. CCGTGCTGGCCGCGCTGGCGGCCGAACCAGTGGTCCATGCGCGGCGCGGTGTCCA 5643 33 93.9 30 ..............T...............G.. TCCAGCCCAGCCCGGAGTACGGCCGCCGGT 5706 32 78.8 0 T................-......CT....GCA | ========== ====== ====== ====== ================================= ======================================================= ================== 94 33 90.0 28 GTCCTCCCCGCCGACGCGGGGGTGTGCCGCTGG # Left flank : | # Right flank : ATGGAGCACGAGCTGTAGCCGGGTGGCGGCCGGTCGCTCCGGAACAGCGTGAACCAGGCGCCGGTGCCTAGCCTGAATGTGCAGCCCGGAGTGCGACGAGGACCATCGGTGGGCTAACGGGGGTGAGCCGGGCGGCCGTGCTCACGGCCCCGGTGGCGGGGCGCGCCTACCCGGTTCCGGGTACTTCCAGCCATTGACGCGTTATCGGGTGAAGCGCCGAGGTGCCAGGTGCGCGCCCCGGGTGGTGTGGGCCTGGCACGCCTGCGTCCCGTCAGCTTCGAAGCTGTGCGGGGGCGTTGGGGGCGGGTACCGTCCTGAGTGTCGAGGTCAGCACGGACTATCCGGAGACCGGTTTGCCCATGAGCACGAGTGAGTCCATCGGCGCGCGGGTGCGAATCGCGCGGAATGCGGCCGGGATGACGCAGCGGGAGCTCGCCGAGCAACTCGGGCGCACCGAGTCGTGGTTGGCGAACGTGGAGAGCGAGCGGCAGCCGCTGGAT # Questionable array : NO Score: 4.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.03, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [47-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 11109-11810 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVLV01000086.1 Streptomyces sp. ST5x T5_R1_mto_contig_86_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 11109 33 81.8 28 .........A..............A.G..T.TC CTTCGCGTGCACGACCCGGCTTGCCCAT 11170 33 87.9 27 .C.........T.....A..............G CGAGATGCTCCGCCGCGTCCGGGTCCG C [11199] 11231 33 84.8 27 ....................AA..A....TA.. TCCGCACCGGGCCCCCGGGCGCCCTCT 11291 33 97.0 27 ........................A........ CGCCGGGAACGTGGTGCGGGACGGCAG A [11320] 11352 33 93.9 28 ...............................GG CCGCGTCCGTCGCGGGTACCGCCTACAC 11413 33 90.9 28 ........T....................T..C AACGGATTGCGCTGTGGCCCCGGTTCGA 11474 33 84.8 27 .C................A.....C.....GT. GAACGCCTTGCCGGCCAGGGCCATCGG C [11503] 11535 33 90.9 28 .............................TT.T GCCAGTCCTGCACGTACCAGCCGGTGCG 11596 33 93.9 28 ..T............................G. CGGCGGTCCGGGCGCGGGCCCGCCGCGG 11657 33 100.0 27 ................................. GGGGTCTGCGTACGGGTCCGGGGTAGC 11717 33 87.9 28 ........................A.....TTC CTGCGGCCCCGCGGGTCCGGATCGGTCG 11778 33 78.8 0 ......................CC...G.CATC | ========== ====== ====== ====== ================================= ============================ ================== 12 33 89.4 28 GTCCTCCCCGCCGACGCGGGGGTGTGCCGGCCA # Left flank : GAGCAGTGGTCCGGGACCGGCGCCGACTTCGTCTGTGGGGAAGTGCTGGACGTCCTGGCCACGGACGAGGAGACCTACGACGCCGCGTACTCCATCTTCGGGGCCGCCTGGTTCGTGGACCCTGCCAAGCTGCTCCCCCTCGTCGCCCGCAGGCTCCGGCCGGGGGGCACGTTCGCGTTCTCCCACCCGCCGGCCATCCCGGGCGCGTACGGGCCGCAAGGCATGTACAAGGGCGGCTTCGCGGGCAAGGCCATGTTCACCTACCGGTACAGCTATACGCCGCAACGCTGGAAGGGCCTTCTCGAGCGGGCCGGATTCCACGACGTGCAGGCACGCGTCCTTGAGGCCCCGACGGCCGGGCACATCGGGACCCTGCTGGTGACCGCCCGGCGGTGACCGAGGGCGGGTGCCGCACTGTGACGCATCCGCATAGCGGAGGGGCGGGCTGATGCTCAAGACGATGAAAAGGACCGACCACGCGATCCAGCGATGCGGGGCGA # Right flank : CATACCGGCTGCTCCGTAGCGAGGTGCCGCCGGGATGCACCAAGCGACCGGCCGGATCGTGCAGGGGCGGCCGTGGGCGGCACGGGTCGGGAGGGGGATGCGGCCCGGCCGCCTCCAGCGGGGCGCGCGGCGGCGACCGGCCGGGGGATCGTCGCGGCGGGGCGGGCGGTGCTGGGG # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.47, 5:-1.5, 6:0.25, 7:-0.04, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTGCCGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //