Array 1 5361-4554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMR010000223.1 Serratia marcescens strain A9 Contig_223_57.0915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5360 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 5300 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 5240 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 5180 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 5120 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 5060 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 5000 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 4940 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 4880 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 4819 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 4760 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 4700 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 4640 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 4580 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15133-13842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMR010000223.1 Serratia marcescens strain A9 Contig_223_57.0915, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15132 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 15072 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 15012 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 14952 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 14892 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 14832 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 14772 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 14712 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 14652 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 14592 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 14532 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 14472 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 14412 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 14352 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 14292 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 14232 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 14172 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 14112 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 14052 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 13992 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 13932 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 13872 28 96.4 0 ....................A....... | G,A,A [13845,13849,13851] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //