Array 1 149004-148261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTI01000021.1 Salmonella enterica strain CVM 43843 43843_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 149003 28 96.6 32 -............................ AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 148943 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 148882 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 148821 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 148759 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 148656 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 148595 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 148534 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 148473 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 148412 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 148351 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 148290 29 96.6 0 A............................ | A [148263] ========== ====== ====== ====== ============================= ========================================================================== ================== 12 29 99.1 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5588-7201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYTI01000034.1 Salmonella enterica strain CVM 43843 43843_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5588 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5649 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5710 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5771 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5832 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5893 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 5954 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 6015 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 6076 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 6137 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 6198 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 6259 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 6320 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 6381 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 6442 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6503 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6564 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6625 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6686 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6747 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6808 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6869 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6930 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6991 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7052 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7113 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7174 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //