Array 1 40494-39429 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIJ01000015.1 Escherichia coli isolate 641A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40493 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 40432 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 40371 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 40310 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 40249 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40188 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40127 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 40066 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 40005 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39944 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39883 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39822 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39761 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39701 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39640 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 39579 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39518 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39457 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67259-66193 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIIJ01000015.1 Escherichia coli isolate 641A, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67258 29 100.0 32 ............................. ACGGTCGAATTAACCTGTAATTTATATCTGGT 67197 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 67136 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 67075 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 67014 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 66953 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 66892 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 66831 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 66770 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 66709 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 66648 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 66587 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 66526 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 66465 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 66404 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 66343 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 66282 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 66221 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //