Array 1 301005-302422 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASZX01000001.1 Clostridium autoethanogenum DSM 10061 seq1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 301005 30 100.0 36 .............................. AGGAACAACTGGGTGGAGTGCTGATGCTGTAGATAA 301071 30 100.0 36 .............................. GCTATCAAGAATTTGTTCTTCAAGCTTTTTAATTTC 301137 30 100.0 37 .............................. TTTCTTCTGCTGCTTGTACATCCCTGCGCATTGAATT 301204 30 100.0 37 .............................. TAATGGAAGATGTAAATGAAGAATTAAGTATTCAAAC 301271 30 100.0 36 .............................. CTAACAGAAAATAAAGCCGGATTTTAAAGGAGGGAC 301337 30 100.0 35 .............................. AATTAAATCTTCTATTTCTTTATCTGTATTGTTTA 301402 30 100.0 36 .............................. TTAACATAGTACCTGATGCGTATTATTTTGCAAACT 301468 30 100.0 36 .............................. CACAATGTGCAAACGGAGGAATTGTTTCTTCTGATA 301534 30 100.0 37 .............................. TTAAAACCCTCGGTATATTGTGCATCGCCTAAAGCTA 301601 30 100.0 36 .............................. ACCCAATAAAATATACGTTGGTATACCTGTAGACAT 301667 30 100.0 36 .............................. AGAAAAAGCCTGAACATATACGTATTATATTTAAAG 301733 30 100.0 36 .............................. GGAATTAAAAAGTTATAAGATAGACGACATATCATA 301799 30 100.0 36 .............................. TTAGTTATTCCAGTTCCGAGATTGGTATCTGTATTC 301865 30 100.0 36 .............................. GTAATTCTCTACATATTCAAGCCCGGCGTTTATATC 301931 30 100.0 36 .............................. TTATATGGCAAGTCTTTTGGTGTACTTGGATCTGCA 301997 30 100.0 36 .............................. GCATCAACTTCAGGTATAATTTGAAGCTTTTGAAAT 302063 30 100.0 36 .............................. CCAAATGCCTTTCAGGAACAGGCATAACCTTAATTT 302129 30 100.0 34 .............................. ACAACCACTACAAAGAATACTCCTACAAAGAAAC 302193 30 100.0 36 .............................. GGCCATTAGTGCATTAGGCGTTGACGAGTTTTGGCA 302259 30 100.0 36 .............................. AAGTATATTTAAACAAATTATAGAAGGATGGAGCAA 302325 30 100.0 38 .............................. GGGAAGCTTTATATTTAAATTTAAGTCTTTAGCAGGAA 302393 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 100.0 36 ATTTAAATACATCTCATGTTGAGGTTCAAC # Left flank : CTTATAAGCAAACTCCATCTGAACCTAAGAATCACTTGATAGTCCAATTCCGTGCTCCTCCTAATATATATTTTTAGGATTGTGCAGAGGCTATTTGTATTTGTGCAATAGCCCCTGCTATGCACACACAATCAATGTTAACACAAAAATGCTCCTTTCTTTAAGCTCTTATATATAGTATATGTATCCATTTTTACTCACTTATTATTCTTTTTTGTTCTTTTTGCAATACCAATTAGATAGCATTATATAAAAATCCTGTTCTTCTTTTATTTTTGCATTTTTAAATAATTCTTTTAAGTCCCAATACGAATATTTTAAGAATTGTTCATATAAATTATTTTGTTTATTTGTTTTCTCTATACTAATTCCTCTAACAAATAATGCTTTTATTATATTATATCCTAATACACCTCTTATATAAATAATTCTCTGGAAGTGTACATCTTATGTTAAGGTTCAATTAAAGAGACTGTTAAAAAATGCATACAGAGAAATTT # Right flank : CCACAGTAAAATAGCCATTCCTTATTTTCATTATAACCCTAAAACCCTTAATAATAAAGGCATCAACTGAAAATTTTCCAACCGTTTTTCAATTTTCATAAACTCAGCCAAAAAAGTGCCTCAATTCATTACATATCAATGCATTGAAGCACCTTCTATCTTCAAAGAGGTTGGAAAAATCAAAGTATTAAATCTTCAGTATTATTTTCATTTATCCCTAAAGTATCCTCCTCAAAACAGCTGTCATTCATAAGCTTTATTATTGTGACAAAATCCTTATCCTTTATAATCTTATTTAATTCACTCTTCAACTTTATCATTTTAGAAGTCGTTATAGCCCCTCTAAAAACAGAATTCTGATGGTGGTGGAAATATTTTTTGCATACCTTAAATACCTTATTTACCCTTTTCTCATTTACATCATAAAATACAAAAGCATAGTTGAAATTAAAATTTTTTCCCATAAAGCTCCTCCAATTATTACATCATATTTTTCAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACATCTCATGTTGAGGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 314398-311598 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASZX01000001.1 Clostridium autoethanogenum DSM 10061 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 314397 30 100.0 36 .............................. GCGAATAGTACCTTTGGTTTTTGCTCCTGGAGCTGC 314331 30 100.0 36 .............................. TATTCTACAATTTGGTTTGTTTCTTTATTTATACAT 314265 30 100.0 36 .............................. TATATGCCTGTAATTAATAAAATTACTGCTATTATT 314199 30 100.0 36 .............................. CCAACTTGATAAGGTGTAAAACATATGTTTTCATTT 314133 30 100.0 36 .............................. ACTTCGCTAAATTATGTTTTAACGAAGTTGTGCAAA 314067 30 100.0 36 .............................. AAGGACAAAACGCTAGGAATTTTGAGCCTAACCAAT 314001 30 100.0 36 .............................. AAAAAATGACTAATATAATATTATCTTATCCATTAT 313935 30 100.0 36 .............................. CAGGTAAAATTCGATTATTCTGTAGTAGAGAATGTA 313869 30 100.0 36 .............................. TGTTTGGAGTAATAAATTATACACAAAATAGTGGGC 313803 30 100.0 36 .............................. TGATGTAATTATTCCTAATCCAGTATCTTTAGCACC 313737 30 100.0 35 .............................. CCTTTTTTAACTCTATATTTTTTATTAAGTTATCA 313672 30 100.0 35 .............................. TTTTCTAGTAATAGAGGTTCCTTTTCTCCACCAAC 313607 30 100.0 34 .............................. CAGTCTACTCGATACAATGGCTTAAACTGCTTAA 313543 30 100.0 36 .............................. CAGTATAAAGCTCCAACTTTTATATGCCGAAGCTTT 313477 30 100.0 38 .............................. GTAATAACTGTTGGAACTGCTATAAGTAGTAAGCCAAA 313409 30 100.0 36 .............................. TAGCATCCCATACAGTTTTGAGTGTGTCTTTTATCG 313343 30 100.0 36 .............................. TAATCATTTTGTTGCTTAGTTATACTATCTTTAAAA 313277 30 100.0 36 .............................. CGAGCAAATTCTAACATTGCATTTAATTGTGGTCTA 313211 30 100.0 36 .............................. GGGATTAGATCAGGATGAAATTGAACTGCTATAGAG 313145 30 100.0 35 .............................. GACATTGCAGATGTATATTTAAAGTTTGGCCAATA 313080 30 100.0 36 .............................. TTTATACATTCCTCCATTTTTATACTAATTATTTAA 313014 30 100.0 36 .............................. TGGAAAGGAAGTATAATATGATAGATGAGATATTAA 312948 30 100.0 36 .............................. CTTACTATTTTGAGTTGGGTTATCTCCTTCTTTTCA 312882 30 100.0 38 .............................. TTTGTAAGCAGAAAAATCCATATCTCTACCTTGTCCTA 312814 30 100.0 36 .............................. CTTACAGGCGTATGTCCAAGATCATTTACTGCCTCC 312748 30 100.0 35 .............................. TTTTTTACCTTCTTAAAATTGCTGAAGCCTAGACT 312683 30 100.0 36 .............................. CAATAATATGGAGCAAAATAATACCAGTACCTAAAA 312617 30 100.0 35 .............................. CTTACATAACCAGATATAGCATCTAAGAAATGTTT 312552 30 100.0 35 .............................. TAAATAGTAGACCATCCAGTCTGATTGCACGGCAT 312487 30 100.0 36 .............................. TAAATCGAATAAAGGATAAGAGCTTTCAATAATGAT 312421 30 100.0 37 .............................. CTGGGAGATTATCCATTCAATAGGTTTATTTGATTTT 312354 30 100.0 36 .............................. TTCTTGCCCAAGGGAATCCTTCTTCTTTGTATCTGC 312288 30 100.0 37 .............................. TTCATCTACAATTTTTTCTATTTCTTCTTTTGTGACG 312221 30 100.0 36 .............................. ATTTCATTTGCTGTTAAAAGTCTTATTTCTTCCATA 312155 30 100.0 35 .............................. AAGTCAATGCAAATACTGATAAAGTAAACAATAAA 312090 30 100.0 35 .............................. TGAAATATAGTAATGTAGAATTGGCGAAAATTAAA 312025 30 100.0 37 .............................. GTGGATTTAGGATCTTTTGTGAAGTTTCTATTTATAA 311958 30 100.0 37 .............................. AAACTTCCATCATTAGGATACATATCAAGTATTTCAA 311891 30 100.0 34 .............................. AACTTAATTACCCTTCCAAGTGGCTCTATAGTTG 311827 30 93.3 37 .........T......G............. TGAAAATCTTTTAAAGAAGTATATGGTCTATTTTTTA 311760 30 90.0 37 A........T......G............. TAATAATCTCTGGCATTTTCCTCGTCTGGAGCTATAA 311693 30 90.0 36 .......T..............GA...... AAATAATAATTGTAAATAATACATTATAAAGGAATT 311627 30 80.0 0 A.......AT..T....A....T....... | ========== ====== ====== ====== ============================== ====================================== ================== 43 30 98.9 36 GTTGAACCTCAACATGAGATGTATTTAAAT # Left flank : TTATTTGCTTCCAAAACACCAATTATTTGTCGTCAAGTTTATTTTATACTGAATTCATAGAGCTAAGCATGTTATCTATTTTGACAGTAGTATTGATATTCTTATTTCGAAAAAATCTTTTTTATGATAAGTCTTTTTCAACCAATTTACGAAGTAAAGGTGCTTAAAGTTATTTGAATTTAATGGCTTAGGGCACTTTTTTATTGAGTTTATGAAAATGAAGTTGAATCTTAAAGGTGCTTTTTTATTTGAAATAAAAAAATGGTTAGAGAATTTTGGTAAAAACTTATTGTGTGTTTCAAACTAAATATCATGGGTAGATTTTTTCCAACCTCTTTGAAGGTAAAGTGTGCTTAAGTGCATTGATATGTAATGGATTGAGGCATTTTTTTGGCTGAGTTTATGAAAAGTGAAAAACGGTTGGAAAATTTTCAGCGAATGCCTTTATTGTTAAGGGTTTTAGGGTTATAATGAAAATAAAGAATGGCTATTTTACTGTG # Right flank : ACTTTATTGGTATAACTTTGAATTATCGTCAAAGTGATGATAGTTGAACCGTAACAAATGTTGTATGAAACAGATTTGTTTAAATTAATTCTAAATATTTCTCAATACTTCAACTTTATTGGTTTTACTATGAATATAAATTTGATTTAAGTACAATAATATAAATGTAAACAGAATTTACTCTATAGATGATATAAACATCAGAAAATATTGGATTATGGTTATCGTCTTTTTTATCATCTGCTTAGTAAAATCAACAATATGTATAGATGCAAAGCTAACCATAAAAAGATAATCCTGTTATACTAAATTTATCTAAAAAGCTCCTCATATTTGCAGGACTTTCCATAAATTAATCGAATAATAACATATATGGAAGACAAATCTTTGTAATATACAAATGAATGGAGGGTGATTATGGAAATAAATCAAATAAACATTAAAGTATACATTCTAGAGAATATTTCTATAGAACAGGCATTGGAAGATCTAAGCAAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 3 318373-316166 **** Predicted by CRISPRDetect 2.4 *** >NZ_ASZX01000001.1 Clostridium autoethanogenum DSM 10061 seq1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 318372 30 100.0 36 .............................. TGTGTTATACTTACGTGCTCCCATCCTTTTCCGTTA 318306 30 100.0 36 .............................. GTGTCTAATATAATAGCACCTGTCACACTATCATAC 318240 30 100.0 36 .............................. TTGTCTTTGTTGCTACATACACTCCAATAACAAATA 318174 30 100.0 36 .............................. TGAAAGAGGCTGATTTAATATTTGTGGATCCGCCTT 318108 30 100.0 36 .............................. GGAGGTATAAAATTTATGAATATTTTAGGAGTTGAT 318042 30 100.0 35 .............................. TATATATCTATACCTTTTAACAATTTAAATACCTC 317977 30 100.0 36 .............................. TTTCTCTTATAGATCCTTTAATTCTTCTATAGCTTC 317911 30 100.0 35 .............................. CCTCATATTCTTTTAATAATTTATAAAATGTATTT 317846 30 100.0 36 .............................. AATATATGTGAAATTCTTTCTCTTGTTGCTGTCAAA 317780 30 100.0 37 .............................. AATACATCTATATGCTTAATGCATGTAGTATCTATAC 317713 30 100.0 36 .............................. TCATCTGCTTATTAGCAATTTTATACTCCTTCTCAA 317647 30 100.0 35 .............................. GTACCTCCTGCACACATAGCAGCAACAAAAGCCAT 317582 30 100.0 36 .............................. TAATTTCTAATTCTATTGTATTCGCTAATAAGGCAA 317516 30 100.0 36 .............................. GTAAAAAACAATTTATTGCACTGATCTATGGTTATG 317450 30 100.0 36 .............................. CTCTAAAGCAAAAATGTGTTACATAGTGCGTGGAAG 317384 30 100.0 36 .............................. ATGGTTGCACTTGGAACTTTATTTTCATTTTCTTTT 317318 30 100.0 35 .............................. TCTTTTGATATGGCCCCTGCATGAGAAAGTTGTTG 317253 30 100.0 36 .............................. GATGTTGTTGTTCCACTTAAATTATTTACGTATATA 317187 30 100.0 36 .............................. TTTTTTTCTTCCATCTCACTTTTTTCTTTCTGCAGC 317121 30 100.0 36 .............................. ATTTAACTGTAAGGTATCTTTTAAACAGCCTAATAT 317055 30 100.0 36 .............................. AAATAAGTACAGAGATCTAGGAGAAGATATATTTCC 316989 30 100.0 35 .............................. TTTGTTAGCCGCCTTGGTGTATCCCAAGTAACCAC 316924 30 100.0 35 .............................. TTTTTGGGAATTACTATTTAAAATGGGTGAGCAAT 316859 30 100.0 37 .............................. TGAGAGATATTAATAGAGATATTAATTGCTGGGATAG 316792 30 100.0 36 .............................. TAATGCTAGTGGACTTAATTTTCTTAAGGTAATAGA 316726 30 100.0 36 .............................. ATTCATGGAATATATTTCTTTTTATATTTAATGCCC 316660 30 100.0 36 .............................. GCACCTAAGTAATCTATAAGTAAAGTATCAACTCTT 316594 30 100.0 36 .............................. GAATTTATATAAACCCAATCAGAATATATATAATTA 316528 30 100.0 37 .............................. TAAATTAATATTCAAGATAGCAGAGCCAAGTACAAAT 316461 30 100.0 37 .............................. ACGCTATAGCTGTTAGCAAACATACTTTATAATCATC 316394 30 100.0 36 .............................. AGAGTACGTTCCCCAAAAGTGGGGAGAGTTGATATA 316328 30 100.0 37 .............................. CGGTGTGGCTTGATAACTATTTTGAAAATAACCACCT 316261 30 93.3 36 .........T......G............. AGTAATTGGAATGTTAATATTTGATCATTAGCTACT 316195 30 86.7 0 .........T.....G........C...T. | ========== ====== ====== ====== ============================== ===================================== ================== 34 30 99.4 36 GTTGAACCTCAACATAAGATGTATTTAAAT # Left flank : TTTTTATTAGTCATGTCAAATTCATATCGCTCATAAGGCTTTTTTAAAGTAATGTTAAATTTAGTAGGAAAATTATTTTTTGTATATTCTGTAAAAGAGTTTCCATCTTCTGAAACATCAATTTTACTTAAATCGCTTCGCCACTCATATTTATTGTTGTTTGTAACTACGTCCCATACTTTTTTAATATCTGATTTAAATGTAGTTGTAATGGTCGATTCCTTCATAATACACATTCTCCCTCATAAATTTACTATTTATCTGTATATTGTACAAATAAATTATACTATTTTATACAATATATTACTACATTTTGTTGAGTATTTTCCAACTAATTTGGAGGATAGAGATGTCTTAAGTCATTTGAATTCAATGGATGAGGGTACTTTTTTTATTGAGTTTGTGAAAAGTGAAAAACGGTTGGAAAATTTTCTGTTGATGCCTTTATTATTAAGGGTTTTAGGACTATAATGAAAATAAGAAATGGCTATTTTACTGTG # Right flank : TGAAAAATTAGGAATATAGTAGACTCTATTATAACGTGAGATTGATGAAAGTCTATAGTCTTAAAACTATTGAAATTACTAAGGTTTTTCTCTGAATTTATATTAATATAACAGGAAGGGTGGTATTTTTGATAAAAAAATTGCATGGGTATCTAATAAATTTATCCATATTTAAGTTTATTTTAATTACATCAATAATACCGTTCTTTATATCATATATTGCTAGTTTAGTAATAAAAAATTATGTAAGGCAATTTCCTAATGACATTCTTAAGGTAAATAATTCATTAATAACAAATGTATCATTTACTATTAATGGCATTTTTATTGCACCATTAGTTGAAACATTTATATTTGTAATAATAATAAGTATATTTTTATATTATTCATATTCCCAAACCATACAAATAATTGCAGTAATTGTAGCTGCAATATGTTTTGGAATTCCTCACTTTTTTAACACCAATGATATGATATGGGGATTATATTGGGCAATACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //