Array 1 107598-106060 **** Predicted by CRISPRDetect 2.4 *** >NZ_DAATES010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SGSC 2182 SAMN02367645-rid5170423.denovo.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107597 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107536 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107475 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107414 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107353 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107291 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107230 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107169 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107108 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107047 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106986 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106925 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106864 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106803 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106742 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106681 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106620 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106558 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106455 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106394 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106333 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106272 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106211 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106150 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106089 29 96.6 0 A............................ | A [106062] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125711-123730 **** Predicted by CRISPRDetect 2.4 *** >NZ_DAATES010000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SGSC 2182 SAMN02367645-rid5170423.denovo.09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125710 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125649 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125588 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125527 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125466 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125405 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125344 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125283 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125222 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125161 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125100 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125039 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124978 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124917 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124856 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124795 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124734 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124673 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124612 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124551 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124490 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124429 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124368 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124307 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124245 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124184 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124123 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124062 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124001 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123940 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123879 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123818 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123757 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //