Array 1 106134-109594 **** Predicted by CRISPRDetect 2.4 *** >NC_020386.1 Dehalococcoides mccartyi DCMB5, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 106134 32 100.0 35 ................................ AGCGAGGGCTATTAATAGTGTGCATACGAGTATAG 106201 32 100.0 30 ................................ TTTTATATTTGGGGAGGCATAACAATAGCC 106263 32 100.0 32 ................................ ACGCCCGATACTGCACACCTAATAGGTACTTA 106327 32 100.0 37 ................................ AAGAAATGGCAGGACAGGCTAGAACTAAATGACTGGC 106396 32 100.0 35 ................................ CTAAAAGTATCTATGAAGATGGGTATAGGGATAAT 106463 32 100.0 34 ................................ AAGCTACTAATAGATGAATTGCCTCAGATAGATT 106529 32 100.0 35 ................................ AGGACACTACCGGTCTCTACCTCGTACCTGAACAG 106596 32 100.0 36 ................................ TGCCAAATACTCCGCAGGGTTAAAGGAGATATTGCC 106664 32 100.0 35 ................................ TAACTAATGGTGGAGGTTATAATAAATGTTAGTAG 106731 32 100.0 36 ................................ GTTAGGTAATTATGCTAAAAAGGCGGAGCTATCCGC 106799 32 100.0 31 ................................ GACCGAGTGTAATGGCAAGGTCAATCTCTAC 106862 32 100.0 32 ................................ ACTCCTACGGTAATAACAGCAGTTAACACTGC 106926 32 100.0 33 ................................ TCAGATTATATTCTGCCTGCCTCTTAGCATTTA 106991 32 100.0 32 ................................ CCCCGCATAGCCGATAACAGGCATATGTGCTG 107055 32 100.0 34 ................................ GTTGCTATACTCTTTACTGCATTGCAGGCACTTC 107121 32 100.0 35 ................................ TACATTAGGGGGGCATGGAATGAGCAGTCTTACCA 107188 32 100.0 35 ................................ ACCAGAGAGCACAACAGGCAATAGGAGTATAGAAG 107255 32 100.0 32 ................................ ATTGTATTAAGAGTTTAATTATTATAGGCGAT 107319 32 100.0 34 ................................ ATTGAAGTTACAGGTATTGCTAAAGAACAAATAG 107385 32 100.0 35 ................................ GTTTACAGCGGAAAACCATATAGTATATCTCATAA 107452 32 100.0 36 ................................ CGATAATAAATACGATGATGAAGAAGATAAGCTAGT 107520 32 100.0 35 ................................ AAAAAACTGAATGCCCCTATCAATACAGTCACGGT 107587 32 100.0 34 ................................ CTCTTTCCATTGCCCAGCTCCGCGTGGGTTGCAG 107653 32 100.0 35 ................................ CGTATAGCTCAAGTGCTTTGCGGATTGTGGGACAC 107720 32 100.0 33 ................................ AAAACCCATATGTTATATCCCGTAGATGAGCCA 107785 32 100.0 36 ................................ CCTCCGATAGGAAATACTTGTGGTCGGGATGCTGTT 107853 32 100.0 34 ................................ ACACCCGATATTGACCAACTGATATAACTGGTGG 107919 32 100.0 34 ................................ TGCTACGATGGGCTAGACGCATTATTTGACTATC 107985 32 100.0 34 ................................ TGCCACTTCCAGTTGAAGGCAAATCCCAGAGCAA 108051 32 100.0 32 ................................ AGGAGTACATATTTGTGGGCAAAGGGTCATAA 108115 32 100.0 26 ................................ CAAATCATAATAATACCTAATGTTAT Deletion [108173] 108173 32 87.5 33 A..TA.A......................... GCAAGCCTCAAAAGGGCACTCAAGGCATGAAGA 108238 32 100.0 33 ................................ CCTCCTCGTATACTACTTCGCCCTTTCCACCAG 108303 32 100.0 36 ................................ CCCTGGTACAGCCGGTATGAGCGTTGTTGATTCCGC 108371 32 100.0 37 ................................ TCCAATTAAGTGCGTCTCGCACGGTCTTGCATTCCTT 108440 32 100.0 36 ................................ ATTTCCAATAGACTAATAAATTTTTTCATTGACGTC 108508 32 100.0 37 ................................ GGACTCTAGTACCTCACAACACTAACAGGATGAGCCC 108577 32 100.0 35 ................................ GACGATGGAGTATAATTATTAGGTGAGGATATACG 108644 32 100.0 34 ................................ ACTCCTGATGTACACCAATATCTAAGCTATCCTT 108710 32 100.0 34 ................................ TCGTACTCAGCGTATTCACAGCATAACGACACAA 108776 32 100.0 34 ................................ TGCTACGATGGGCTAGACGCATTATTTGACTATC 108842 32 100.0 30 ................................ ACTTTAGCAACGTATAGCTCATCCAGATGA 108904 32 100.0 32 ................................ TGACTCTCCCTATGCGTGCCATCTGGCTCTAA 108968 32 100.0 35 ................................ CCATAAAGACATAACCGGTGTAAAACGCGTAAATA 109035 32 100.0 35 ................................ TTTACCTCTGGTAAAGAAAGTCTCTGCCGGAGTAC 109102 32 100.0 35 ................................ TTTAATTAATTGGCTGTCCCTGGCTACAATAACTA 109169 32 100.0 32 ................................ CTGCCTTCTTATGCCATTCTACAGCCTCTGGA 109233 32 100.0 34 ................................ GCTAGCGGGGGTTGTGACCTGCCATTTCTCCATG 109299 32 100.0 34 ................................ TATATACTCGCTGAAACCAACTGAAATACACTGG 109365 32 100.0 34 ................................ CGTACCGGATACCTGGCATTGCGAGGGTGTGGGC 109431 32 100.0 33 ................................ CCTCCTCGTATACTACTTCGCCCTTTCCACCAG 109496 32 100.0 35 ................................ TGGTCACTGCGTTACCCATTGTCTTATATCTTTGT 109563 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 53 32 99.8 34 GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Left flank : TGCCTACCCGGCATTCATATATCGCTAAAGCAAGACTGTACCTTAACAACCAAATAAACGATAAAAACAAAACGGAGCAAAACATGCTGGTATTAATAACTTATGATGTAAGTACAGAGACACCCCAAGGGCAAAAACGCCTCCGTCAGGTAGCCAAAATATGCAAAAACTTTGGACAGAGAGTCCAAAAATCTGTTTTTGAATGTCTTCTAGACCCCTTACAGCTGGCCAATATACGCTTCAAACTTCAAGTAACCATAAACCAAGAAGAAGACAGCCTGCGCATATACCATCTAGGCAGCAACTGGAGACCCCGTATAGAACACATGGGTATAAACCGTCCATATGACCCGGAAGGCCCGCTAATCCGCTAAGCCCAAGTGCATAGCTATTCAAACCTTGAGTTAGCGAGCTTTAAATACCTATATAAAAAACTCTTCAAAGCTATGCTAGAAAGATCATATTAAACAACTCTAGCATTATTTAGCTTTGGGTATACT # Right flank : CTAGGTATACTAAAGAAGCATATGTTAAAATTATTATAAATATGCTTAACCATAAAACTATGAGGAGAATAAATAGGAGTGCAAAAAATAACTAGTAACCTGCCTCTATCTTACTATATGGAACTAAAGTACCAGATTATTTTAATACCTGACCCCTCTGGCGGATACGTGGCAACAATAGAAGAACTGCCCGGATGTCTCTCTCAAGGAGACAGTATAGAAGAAGCACTCGATAATATAGCCGAAGCAAAAGAACTATGGCTAGAATGCACATATGAAAATAAACAAGAAATAGAATTGCCCCGCACCAGTGGAAACTTTGAGCGCTATATTATTAGGTATATTTAAAAGGGAAGGGCATATATTGTTCTCCTTGGGAGTGTGAATAAAACTGGTATCTCTAATTAATTAAGGAAAAAGTGGTAAAAAAAGTTCTACCTATTGATACCCTGGCTCCACCATAAAGCTAAAAGCGCTGTCGGTAGCTCGAAATGGCGCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1320714-1318974 **** Predicted by CRISPRDetect 2.4 *** >NC_020386.1 Dehalococcoides mccartyi DCMB5, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1320713 29 100.0 32 ............................. CCACCCTCAATATGCGGATAGCCCCCCTGTAC 1320652 29 96.6 32 ............................C CCATCTGTAGTATCCCCTGTATTACCCGCCTG 1320591 29 100.0 32 ............................. TATACCGCTACGTGGAAAGAAAAACGGCTCAT 1320530 29 100.0 32 ............................. ATAAGCCGGGCACGTAATTCAGAAGAAGATGG 1320469 29 96.6 32 ............................A GCTGGTAAATGTCATATTGTGGCAACTTGTAC 1320408 29 100.0 32 ............................. TTGCTTTTTAACCACAACGCCAATGAGCCAAT 1320347 29 100.0 33 ............................. TCCTGCCCTGAAAAGTAAGGGTTAGGGTTGGCC 1320285 29 96.6 33 ............................T TCTAATGGGGAGTTCAAACGTATAGAAGCTACC 1320223 29 100.0 33 ............................. TGTCAGTTCCTTGTCTTCTTCAGTTTCACCAGG 1320161 29 100.0 32 ............................. GCACCTGTACTGGCGGTACGCAATAGATGCAC 1320100 29 100.0 32 ............................. AACGCGGGCCAAGACGGGATATCCTCTACTGC 1320039 29 100.0 32 ............................. AAATCAAGGCCAGCGGTGATATGTCCAGAGAC 1319978 29 96.6 32 ............................T GGAACTACAGGATGGGTAGCGAAAAGACTAAA 1319917 29 100.0 32 ............................. GTGGTTATGAAAAACGCTTCGTTCTGGTGGAA 1319856 29 100.0 32 ............................. AGATGACCACCCGTTTATACGCACATCTGTCT 1319795 29 100.0 32 ............................. GCCTCTTTGGCTACTCGATGCTTGACTCCTAG 1319734 29 100.0 32 ............................. CCCTAGCGATGCGGCATATTTCAAAGAACAAA 1319673 29 100.0 32 ............................. TGATGCAATCATAGAACAACTAGCCAGAGAGT 1319612 29 100.0 32 ............................. TCCGGCTGGACAGCTGAAAACTGCTGGGTACG 1319551 29 100.0 32 ............................. ATATGTGCAGTATCGTTTGACCACTGTAGCAC 1319490 29 100.0 32 ............................. GGCTAATATTACTTCAGACCCGATACCCAGAG 1319429 29 100.0 32 ............................. ATAATTACTCTGGTGTATCAACTTATGCTGAT 1319368 29 100.0 32 ............................. GTAGGTGAGCCAATCGGTCCTGGTACTGTCCC 1319307 29 100.0 32 ............................. CCGGCATCGGTCTTTTTCCAACCTAGTTCCGA 1319246 29 100.0 32 ............................. TAACCTCCGCCGCCGCCGCCACCGCCTTCTCC 1319185 29 100.0 32 ............................. CAGTCATGGCAAATGTACTTCCCTCGGTGTAA 1319124 29 100.0 32 ............................. TCATTAAGGCAAATTAGAGGCCTTACTCAAGG 1319063 29 100.0 32 ............................. TAGCAGATAGAATACATATGCATGCTACTAGA 1319002 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTATTCCCCACGCATGTGGGGGTGAACCG # Left flank : CTATTCCAGTGGCGTTCAAGGTTGCAGCGGCCAATCCAACCGACCTTGAACGCCAGGTAAGAATTGAATGCCGGGAGGCCTTTTATGAATTCAAACTCCTTGAAAGGCTATTGCCGGATATTGCGGAGGTACTTGGTGTTAGTGATGATATTGGAGAAAGTCCCGACGAGTTTGAGGGGCGCATTGTCACGTTGGCTATTGGAACCGAAGACGGGAGTTTTTCTTGGGAACCCGAGCGCTCGGGTGAGGGATGAACTCTGGGAACGGGCGATAAATAAGACGAAAGAAAGCGGTGCTATCCTCCAGATTTGGACAGACCAGAACTCCCAAGGATTTTCTTCCCGCCAATATGGTGAGAGGGAGCGGACTTTTGTTGATTTTGAAGGGTTATATCTGGTAAAAATAGACAAGAATACCAGCACTATCAAAACGCAAAATTCTGACACTACAAACCCCTAATCAGGAATGACCTGTTTTAAGGTCAGCTTTGTTATTTTAGG # Right flank : AAGTTGAGGCATTGACTCAGGCAATATGCTGTGTAGTTTCTGCGTTACCGGCCGGTAAATTGCCAGCTTACCGTGTCATTGCCGGTGGAACAGGATATTGCCCGCCTTTCAGCGCCTTGTAATTGGGATAAGATGATGGAAGTGTACTCAACTCTTGGACTCTATCCTAATGGGCATATAATGGCTAGCTTAAGGCAAAAATTAGGTAAAGGCATTTGTACCAACCGGGGTATAGAAAATCTGAAAGACGGGGATTACTTACTACTGCCGGATTGGTTATCCGCCGCCAGCGCCTCCGCGGAAAGGTAGTATTTATCACCCTTGAAGATGAACTCGGTCATATACACTGCATGGCATTCCCCGACACTTACCGGCAGAATGAGCTTACCTTCAAGCAGACTTTTCTGGTAGCAAGCGGTTATCTTTCCCGAAAAGATGGCGCTTGCAATATCGTGATTCAAAGGGTAGAAGCACTCAGCTTAGAAGCAAAAGTGCCTGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //