Array 1 434464-435757 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053789.1 Streptococcus canis strain HL_98_2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 434464 32 100.0 33 ................................ AGTTAAAAGCATTGAATTGCATAGTACATTATA 434529 32 100.0 36 ................................ TAAGGCCATTTCAAATATTTTTATGGGAAATAGCAC 434597 32 100.0 34 ................................ CCCTTGGTAAACAGCCATGAAATTTTGGTCGTTT 434663 32 100.0 36 ................................ GATTCCTTCGGCGCAGTAACTAGCAAACTTAGCAAA 434731 32 100.0 33 ................................ CCTGTTTCAGCAACATATCGAGCATGCCAATTA 434796 32 100.0 35 ................................ CCAGATGAAGCCTTTAACCGAGCAGCAGGGGTCAA 434863 32 100.0 34 ................................ TATGACTTTGACAAGCTAACGACTGGGCTTCATG 434929 32 100.0 35 ................................ TTGTACCCATTTTAACAGAAATTGAGGTATAAAAC 434996 32 100.0 37 ................................ AATAGAGAAAAAACTATACGAGTACAAAGTTTATGAG 435065 32 100.0 34 ................................ ATACGAAAGGTTATCTAATGGTATTAGAAAAATG 435131 32 100.0 35 ................................ AATATAAGTTTGTCCAGTCTGTTTCTCACAGTGTC 435198 32 100.0 34 ................................ CTTAAGCTTGATTATATTATAACTCTGTGTTTCT 435264 32 96.9 34 ........T....................... AAAGAAATAATCATGAGCACGGCTATTGTTTTCT 435330 32 100.0 35 ................................ AACTTGTACGTATAAATCCTTGGCTTCGTTAGTTA 435397 32 100.0 34 ................................ TTCAAACTCTTCGGTTTCTACGTTACTATCTTCT 435463 32 96.9 34 ........T....................... CTGCAACATGCCACGGTTAGTCAACTTGATTTTT 435529 32 100.0 34 ................................ AAGAAAAAATGCGGAACAAGAATTTTGGAATAAA 435595 32 100.0 33 ................................ AACTTCTGCAACTCAGCAACACTTAAGCCATCG 435660 32 100.0 34 ................................ TCCAATGTAAATACCTTTGAGTCGGTTAGCTGGA 435726 32 81.2 0 .....................AC...A..CTC | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 98.8 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTTACTTATGATGTAAATACTGAGACATCGGCTGGTAGGAAAAGATTACGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCTGCAGAATTTGTGGATATAAAACACCGCTTAACACAGATTATTGATGGAGAAACTGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGCCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAACGTTTAGTGCGACTCGAGGTTTCACAGAAAAACCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAATCGAAATGGAGATAAAAAGGTTTAAAATGCCTCTGTATTCTCCAGCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : CCTATGTTTTTGGCAGTTCTGTTTTGTGATTTTCTCTGTTCACAAGTTTCCAACTGTTTTGTCTCTACTTTTTCTGTCCTATATGCTATAATATGCCTAAATAACTATGGTAAAGGAGTTAGGATGACTAAGGTTCGGTATGGGATTGTGTCGACAGCGCAGGTGGCCCCTCGTTTTATTGAGGGTGTACGCTTTTCGGGCAATGGCGAGGTTGTGGCGGTGTCTAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTACCTAAGGCTTATGGTAGTCTTGATGACATGTTGCTGGATACGTCGATTGATGCTATTTATGTGGCAAGTATCAATCAGGATCATTTTCCTACAGCTAGGAAGGCTTTGCTGGCAGACAAGCATGTTCTCGTGGAAAAACCGTTTACCTTGACAACCGCTCAGGCTGAAGAGCTCTTTGCCTTAGCGCAGGAGCGTGGCTTATTTTTGATGGAAGCTCAGAAGGCTGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 802900-803202 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053789.1 Streptococcus canis strain HL_98_2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 802900 36 100.0 30 .................................... GTAAACAGTATTTTTCCCGTCAGCAGATAC 802966 36 100.0 31 .................................... TCAAGCACAATGTCAAAAGTCATTGAAACTC 803033 36 100.0 31 .................................... CTATTGTTGACGTACAACTTACCGCTGATAT 803100 36 100.0 31 .................................... CTAATAACTTATTTAGAGATTGAAAAAGTTT 803167 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 31 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : TTAGCAGCCACAATAACGGAATTGATTGCTTATGAATGCTTAGAAAATGAGTTGGATTTAGAATACGATGAGATCACCATTTTGGAACTGATAAAAGCTCTGGGAGTCAAGGTTGAAACACAAAGTGATACTATCTTTGAAAAGTGTCTTGAAATTTTACAAGTTTTCAAATACCTTTCAAAAAAGAAACTTTTAATTTTTATTAATTGTGGTTCTTACCTTACAAAAGAAGAATTATTGAAGATAAGAGAATATATTGACTTGTCTCAGCAAAGGGTTCTTTTTATAGAACCAAGAAAGTTATACAATATTCCCCAATATATTTTAGATGAAGATTATTTTTTGATAAAAGAACATACAACTTAGACTACATTCGTAAATGTTGATTCTATAGGTTTTTTGGCGTATAATATAGCTATGAAAAGGACTGTTTAAGACTAAAGTCTAGCTAAGACAAATAGTGCGATTACGAAAAATTGTGGACGAAAATAGTCTACGAG # Right flank : CAGATAATACCGCTTGTTGTTGATCTTCGCTTCTTTCTATTAAAATGTTTTCATGTTATAATAGTTAAAAGGAGGAAGAAAGTGGAGCGATGGAACAAACATTTTTTATGATTAAGCCTGATGGGGTGAAACGAGGGTTAGTTGGGGAGATTTTGCGACGTATTGAGCGGCGAGGGTTTACATTTGAACGCTTGGAGTTGCGGCAAGCTAGCTCGGAACTCTTGGTTAAGCATTATGAGGCCTTGGTTGCGAAGCCATTTTATCCTCAGTTGGAAGCTTACATGACCAGTGGCCCTGTTTTAATTGGGGTACTTTCTGGGAATCGGGTGGTTTCGTCTTGGCGAACCATGATGGGGGTAACTAATCCCAAAGATGCTCTTCCTGGCACTATTCGAGGTGATTTTGCTCAGGCTCCTGGTGATGATGGTGGCATTTTTAACGTGGTTCATGGGTCTGATTCTCTAGATTCTGCTAAGCGTGAGATTGCCCTTTGGTTTAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 1150102-1149470 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053789.1 Streptococcus canis strain HL_98_2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1150101 36 100.0 30 .................................... TGCTGCAATAGGTGTAGCAACTAAGCTGGT 1150035 36 100.0 30 .................................... TAGCAAACCAGTTGAGAGACTAGCGCTCAA 1149969 36 100.0 30 .................................... TGTTGGTAGTAAGGGTAGGAGCTAAGCCGT 1149903 36 100.0 30 .................................... ACTTAACGTTTTACAAAGTTGTATTTTACA 1149837 36 100.0 30 .................................... TTTTGTATCAAATTCTAGCCCAGATGTGCA 1149771 36 100.0 31 .................................... CTATGGGTGCATCTCTAAAGCAATCGCTTGG 1149704 36 100.0 30 .................................... AGAAGCAATTGTCATGAACTCTAAGACATT 1149638 36 100.0 31 .................................... TTGCTTCTACAGTTACTAACACATTTCGATA 1149571 36 100.0 30 .................................... TTATCATCAGAAAAAATAGTGAGAACCAAC 1149505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : CACAGCCTGACGACGTCCACAGCGAGCCTTGTTCGCCTTATAGTAATGATAGCACTCAGTTGGCTGAATGCCCTTGTTTGAGGAAAGTCACTACCTTATGAATGGTTTGACGGCTTCGCTTAAGTGATTGCGCAATTTCGAGGACAGAAGTATCTTTCTCAACAGATGCCTCTATCATTACGAGCTCATTTGTGGTAAGATGGGCATGGGTCATTTATGTTACTTCCTTTCAGACAAATGTGGTGTTTATCTGAGCCTAACATAGATGGCTTTTTCTGTCTAATTTAATTTTACAAATTGGGCACATAAAAAATTGTAAGGCGACAGAACAAAGGAGAAAAGAAGGTTTCATGCGTTTGTCGTGCTGGGATAAGAAGGGAAGTTGATTCTATAGGTTTTTTGGTGTATAATGGAGCTATGAAAAGGACTGTTTAAGACTAAAGTCTAGCTAAGACAAATAGTGCGATTACGAAAAATTGTGGACGAAAATAGTCTACGAG # Right flank : TTGACAAAATCACGGTTACCAATATGTTCGCCAAATTTCAAGTGTAAGTTAGCCAGTCTGTAAAAACTCTTTAGGAGATTTGTAATCAAGTAGTTTCTTTGAGTAGTTATTAATCCCATTTTCAATAAATGCGGCTTGTTGTTGAGTCGCATTTTTACGTCTCTTTGGTAATCAACGCCGAATGAGTCTGTTGTGATTTTCATTAGTTCCTCTCTCCCAAGAAGAATAGGGGTGGGCATAGTAGATATAATCAGGATCAAAAACTTCTGCTAAACAACTAAATTCAGTGCCATTATCAGCAGTGATAGAGTTAATCTGATAGACTTCAAGGCTTGATTCACTGAAGAAGCCGATTTATCAGGAATAAGTCGAGTGATTTGGTAGCGGCTTTTTCTGTCTGTCAGCGTCAGTAGACACTCGTTTTTTCCCGAGTTTGAATAACCGTATCAATTTCAAAATCACCGCTATGCTCACGATTGTTAATGCTTTCAGGTCGCTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //