Array 1 16634-15203 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFY01000019.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45394 N45394_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16633 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 16572 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 16511 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 16450 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 16389 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 16328 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 16267 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 16206 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 16145 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 16084 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 16023 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 15962 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15901 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15840 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 15779 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 15718 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 15657 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 15596 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 15535 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 15474 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 15413 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 15352 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 15291 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 15230 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10984-10282 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFY01000058.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45394 N45394_contig_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10983 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 10921 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 10860 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 10799 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 10738 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 10677 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 10616 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 10555 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 10494 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 10433 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 10372 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 10311 29 96.6 0 ............T................ | A [10284] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //