Array 1 456184-460970 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN651366.1 Chromohalobacter japonicus strain CJ, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 456184 29 100.0 32 ............................. GATCTGCTGCATCAACAGCATCGTTATAGACC 456245 29 100.0 32 ............................. GATTTGAGGTGGCCTTGGAGAATCACCTCAGC 456306 29 100.0 32 ............................. GCGAGCGGTGGACCAGTACTCTCGACGGGCGG 456367 29 100.0 32 ............................. CGGTAATCGCCCTATCCCTGACCGCTACATAC 456428 29 100.0 32 ............................. AAATCTGTGCGAAAGAGAGGCGGTGGAGATCG 456489 29 100.0 32 ............................. TTGCCCAGCTTCGCGCCGAGCGGTCTGGCGAT 456550 29 100.0 32 ............................. CGTGCCTTGGTCGGGGTGATCTGCCTGGAACT 456611 29 100.0 32 ............................. CGGCAGGGGTCTCGCGAACCATCTCAGCAAGA 456672 29 100.0 32 ............................. CAGTTAGAGCTTTACGTACAGCAAATGGCGTG 456733 29 100.0 32 ............................. CCGAGCGCGAAGAGGCCGTCAAGACGTTGGTC 456794 29 100.0 32 ............................. GCGTTCTTGTGGAGTCCGTAGGGCTATGCAAG 456855 29 100.0 32 ............................. CTAAAGCAGGTCATTCGCTATTGGGACAAGGC 456916 29 100.0 32 ............................. CAGGTCGTGGACATGATGAATGACCCCGACAC 456977 29 100.0 32 ............................. ACAGTGGATGAAGCAATAAATGATTGGTGGCT 457038 29 100.0 32 ............................. CTCGACGAGCCCATCGACACCGGCAGTCTGCC 457099 29 100.0 32 ............................. TGTGATAACTATATGTAATTACTCAAAATATC 457160 29 100.0 32 ............................. CGAGATTCGCGCCACTGGAGATATCTGCTTGG 457221 29 100.0 32 ............................. CAGGTCAATCCATTCACCCACCCAATCCTTGA 457282 29 100.0 32 ............................. TGGCTGATGTCGTGAGCGTAGATGATTATCTC 457343 29 100.0 32 ............................. CCATTTCCCACCACTCCAGGTGCGCAAGCGAA 457404 29 100.0 32 ............................. CTGAGCCATGCTTAGGCCAGGCCTGTCGTCAA 457465 29 100.0 32 ............................. CTCCGGCCTGACCGGCTCCATGCGCTCATTCA 457526 29 100.0 32 ............................. CCAAGGATGATGCTTGCGCCGCCACCCTGGCC 457587 29 100.0 32 ............................. CTACTACGGTCAGTCGTCTTCTCAGTACGCTG 457648 29 100.0 32 ............................. ACGGCGCAGCCTATTGCGGGCTGATGGGCGAG 457709 29 100.0 32 ............................. CCGTCGGCACCGTCCTCGCCATCTGGCCCTTG 457770 29 100.0 32 ............................. GCAGACACCCACGGACTTCAGTTCTGCGGCGA 457831 29 96.6 32 ............................C GCAGTGGCTGGCTCAGAACGAGAGCGGCAAGT 457892 29 100.0 32 ............................. GATATTGCCAAGCGCTATAGCGTGGCAAGCAC 457953 29 100.0 32 ............................. TAGGATACGGCGCGAAGTATTCCATCTACGTC 458014 29 100.0 32 ............................. CGCTGCTGCCGCTGGGCAGACCGCCGCCGGCA 458075 29 100.0 32 ............................. TACTCGACACCGCCATCCGGGTATTCAACTTT 458136 29 96.6 32 ............................T GCCAGTAGCTCAATGGTAGAGCGTCGGCCTCA 458197 29 100.0 32 ............................. TGATGTTCTCTGATGGCTCTGTCGAGGAGGAT 458258 29 100.0 32 ............................. CCGCGCCACCACTCGTGAAACAACTCTGACGA 458319 29 100.0 32 ............................. GATGCCTATGCCCGCTATCAGGCCGGCGCGCG 458380 29 100.0 32 ............................. CTCTATGCTGACGCCTGGAAGCGCATCGACCG 458441 29 100.0 32 ............................. GAACAGGCCAAGCGCGTCGAGGAGCTGACGCG 458502 29 100.0 32 ............................. CTCGACGCTGTCAAGCGAGGCGTCCAGCCGGT 458563 29 100.0 32 ............................. TAATCAACAAACTCTGAGGTGGTGAGATCCAA 458624 29 100.0 32 ............................. ACATGCTGAACCGCGATGCACCCCGCCTGACG 458685 29 100.0 32 ............................. CATCGCGGTGATTGGCACAGGGCTGAGGCCGG 458746 29 100.0 32 ............................. ATTTCTACTTAGCTCACCATCGCGCCATGTGG 458807 29 100.0 32 ............................. ACCATATCGACGCGTTGCCCGTCCAGTAGCGC 458868 29 100.0 32 ............................. ATGTATTGTTCTGAAAGGTGTTCGGTTTGGGC 458929 29 100.0 32 ............................. CGCCATTTACCGGACGCGGCACAGGCGACGCG 458990 29 100.0 32 ............................. CCGCTCCAACGCCTCAGCCGCCACCCGTGCAT 459051 29 100.0 32 ............................. ATGGTTGAGGCCAGGCAGTCTCGCGCTACCGC 459112 29 100.0 32 ............................. CCAATACATCCGCATGTTCGGCACAGCGTTGC 459173 29 100.0 32 ............................. TTGATAAACTGGTTACCAACAGCGCCAAGAGC 459234 29 100.0 32 ............................. TTCTTCTCGAAGTCGCTGTCGCTGTAGTACTC 459295 29 100.0 32 ............................. CGGAGAGTCTTGGCTCCAGCGCAACTGGCGTC 459356 29 100.0 32 ............................. CCAATCGTCAGAACGTCATCATCGGCGCGCAT 459417 29 100.0 32 ............................. GTCCGTTACGCCCCCGGCATGATCGACGAGGG 459478 29 100.0 32 ............................. CCCAGCTAAGCCAACAAGCGCCGGGGCAAGCA 459539 29 100.0 32 ............................. TCCTCCACTTGCTCGCTGAACTTCGTCATGAA 459600 29 100.0 32 ............................. CAGGCTCTTTGGCATTGAGAAGCTTGGCCACC 459661 29 100.0 32 ............................. GCAAATGCCGCGCTGCGCGAATGGCAGAGCGC 459722 29 100.0 32 ............................. AGGGTATGGGCCCCGTCGACGAGGATGATGGC 459783 29 100.0 32 ............................. TTTCTTTATTCATTTATGATCCTCCACCCCGA 459844 29 100.0 32 ............................. CCTTTCAGCGCGACGCTCTAGGTATTCTGCAA 459905 29 100.0 32 ............................. AAATAAGTGCTAGATTTAAGGGCAAGCCAAGG 459966 29 100.0 32 ............................. GGCCGGCGGATCTGCATGGCCTGCGTGATGCG 460027 29 100.0 32 ............................. CTGCTGACCCTGCCGCTGAACAAGCTCAACGG 460088 29 100.0 32 ............................. GTGCTGCCCGATCTCGCCGCTGCCGATGCCAA 460149 29 100.0 32 ............................. TACGCGTGGAAGAATGTTGGTCCGGCGGGGAT 460210 29 100.0 32 ............................. ACGCGATTTGCGCTTACCAGTTGTAGATGATC 460271 29 100.0 32 ............................. CGGCAGGGGTTTCGCGAACCATCTCAGCAAGA 460332 29 100.0 32 ............................. CTCTCCTGAGCGCCGTCAATAATAGACGCGAC 460393 29 100.0 32 ............................. CTGGCAAACGCCAGTGTGACAGGCCCGCGTGT 460454 29 96.6 32 ............................A GTACCCAGCCATACCTACGGGCAGTCGCCACC 460515 29 100.0 32 ............................. TGGGCCGGAAAACCGCCTCTCCTCAATGACAC 460576 29 100.0 32 ............................. CACCACGATCCGCGATGCGCTCGATCGTGTGA 460637 29 100.0 32 ............................. GCAGCAGCCGTGAGCTACCGGCCTCGATATCC 460698 29 100.0 32 ............................. AACATGATCACTACCCGCCACATCAACGAAAC 460759 29 96.6 32 .......................C..... ATTCTCGCCGAGCAGCGCCTGCTTGCCCGTCG 460820 29 86.2 32 ............CA.C.......C..... TTCGGGGTCCAGAACGATGCCCTGGTCGATGG 460881 29 93.1 32 .............A.........A..... TCGAATTCGTGCAACTGGTCGTCGGCGATGCA 460942 29 79.3 0 ............CA.........AT.GT. | ========== ====== ====== ====== ============================= ================================ ================== 79 29 99.3 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGATCGAGCCGCCACTTCCGCCGCCCGATTCGGTACCGCCAGCTATTCCCGAGCCGGAATCTTTGGGCGATGAAGGGCATAGGAGTCAGTGACATGGCGATGTTGGTAGTGGTCACTGAAGCCGTCCCTCCGAGACTCAGAGGTCGTCTGGCAGTCTGGTTGCTGGAAATTCGCGCTGGTGTATACGTGGGCGATGTCAGTAAACGCATTCGCGAAATGATATGGGAACAGATAGAAGCCCTGGCCGAGGAAGGTGGCAACGTTGCCATGGCCTGGGCCAGCAATCACGAATCCGGATTCGAGTTCCAAACCTATGGCGACAACCGTCGTGTCCCCATCGATCATGATGGATTGAGGCTGGTGCGGTTTTTACCGCCTCAAGATAATTGACTGATTTTAAAGGCTCTTTAATAATTTGGAGCGATTAAATTTTAAGCAAAATCGCTGGTGGAAATTTCCCCGGCGATTTTGTTCTTTATAAACAAGCGTCTATGATTAGA # Right flank : GCTGTGTTAGCTGCCGCCCAGGCAGCTCAGAAAAATCACCGCGCCAAGAAAATCGCGGCCTAAGGGTCAGCGCTACCCCGCGATCTTGAGTCTTATATCGGCCCGAGCGGTCGCGTGTTCGAAGTGTTGAACCGCAGGCGCAAGCTCAGCCTGCGCCTGATTTTTTTGGCTTCACGATGGGCTCAAGATGCCGTACGAGAGCCTGATGAACGAGACGGCTGCCTGAATCATCACTCTGCTTCTGCCCGCACTTCCTTCAATCGATCGGGGAAGTTGGTGAAGAGGCCGTCGACGCCCCAGTCGAGCAGTTGGCGCATCCGGTCTTTGTCGTTGACGGTGTAGACATGCACCAGAAGGTTGTTGGCGTGGGCCTGTTCGATGAAGCGGGCATCGATGACCGGTTCACCTTCGTAGAGGTAGTTGGGGCCGACGCCATCGGCGTAGTCGGCGATTGCCTGGAAGTCGGCACCGGTGATGTTGGCGGGGCTGGGGGTGACGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //