Array 1 28790-27539 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEH02000049.1 Salmonella enterica subsp. enterica serovar London strain HIY0010 NODE_49_length_30589_cov_13.728383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28789 29 96.6 32 ...........................T. CCAGCGGAGAGCGAGCTATACCAGGCTCAATC 28728 29 96.6 32 ...........................T. TCCGGAAAATCTACCGTTCCAGGGCGGGGCCG 28667 29 96.6 32 ...........................T. GGAACCAAGTATACGCGTAGACAGCGTCAACG 28606 29 100.0 32 ............................. GAATTGGCGTATCTGTGTCTTGCCAGACAGGG 28545 29 100.0 32 ............................. CGTAGACCACCTCTTTCGATATGTGAGTGAAG 28484 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 28423 29 100.0 32 ............................. ACATAATCCCCATGTACATAATTTATGCTCCG 28362 29 100.0 32 ............................. ATCCAGCAGAGCTACAGGAACGCCGCAAGGCC 28301 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 28240 29 100.0 32 ............................. TTAAATGCATCGCGATCCCTTGCAATTATAAC 28179 29 100.0 32 ............................. CCGGGATCCGTCATCGGTCGTGGTTCACTGCA 28118 29 100.0 33 ............................. GGCACGTTTACCGTTCCGGCTGGGGTTTATCGT 28056 29 100.0 32 ............................. GGCGGATCCACGATAATTTTGTCGTTATGTAT 27995 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 27934 29 100.0 32 ............................. GCGCTATTGTATATCGACCATAAACATCGGCT 27873 29 100.0 32 ............................. TCCCTGCTGGCCGTTCTGGAATTGCGTAGCGC 27812 29 100.0 32 ............................. CCGGAGCCTGACCAGGATTTTTCCGCCGTGTA 27751 29 100.0 32 ............................. GAATTGCAGGAGTGGTTTATCGAGTGTTTACA 27690 29 100.0 32 ............................. AATCAACGGATCTTGCTAATGTAGTTTCTGCA 27629 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 27568 29 93.1 0 A...........T................ | A [27541] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGGTTTGCCGACAGCAATAAAAAAGCGTTGTTGGCGGAGGTTGGTGTAGGCACGTTGGATCAGGCGATGATGGCGGTAATGCCATTTAAACATAACAACCTGCGGTTACTGGGTCTTAGCAACAAGATTTTACTGGCGGATGAGATCCATGCCTGTGATGCATGGATGTCCCGAATACTTGAAGGTTTGATCGAACGGCAGGCCAGTAATGGCAACGCCACTATTCTGTTATCTGCGACGCTATCGCAGCAGCAGCGAGATAAGCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGTAGCGTAGATATTGGCTGGCTACATAGTGAAGAGTCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8311-7429 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDEH02000072.1 Salmonella enterica subsp. enterica serovar London strain HIY0010 NODE_72_length_13605_cov_12.961641, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8310 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 8249 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 8188 29 100.0 32 ............................. CTTCCAGTTTTTTCCCTGCCTTTTGGGCGGCG 8127 29 100.0 32 ............................. TACCTGACGCTGATCCAGTCGATCGCGCTGCT 8066 29 100.0 32 ............................. ATTTTCTTTGCGCCCGTACTCAACGTGGGAGG 8005 29 96.6 32 ............................A TCGCCCCGAGGTCGTTCACGACGTCCTCGTGC 7944 29 100.0 32 ............................. CGTTACTCCAGACAATAGAGCGCCTCACCACT 7883 29 100.0 32 ............................. CATAGGGGCCGCAGAAGTTGCCACAACCACAA 7822 29 100.0 32 ............................. GGGTCAATGTTGATGCCGGGGTGTGTTGTTAC 7761 29 100.0 32 ............................. GGAACTCATGCTTTTACCTGATGCGGCGGCAC 7700 29 96.6 32 ..........T.................. CGAGGCGGCATCAAAGACGACGAAACACCATG 7639 29 100.0 32 ............................. GATTTTCCCGCGTTGGTTGTATGCCGTGCGTG 7578 29 100.0 32 ............................. CGCGTATTAAACGGGCAGATCGAGGAAACAAC 7517 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 7456 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGTGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //