Array 1 18114-18941 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOC01000034.1 Lactobacillus taiwanensis strain 601a 601a_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18114 36 100.0 30 .................................... ATCTAGTTGCTATTGGAACACGCTTCAAAG 18180 36 100.0 30 .................................... TTTTCTCCTTTACTAAACAAGGTATCTGCA 18246 36 100.0 30 .................................... ATTGACTGTTTATGATAGCCCTGCTTGGGA 18312 36 100.0 30 .................................... AAAGCATAAACCAGCTTATTCATGAGCTAG 18378 36 100.0 30 .................................... TAGAAGAGTTGCAAAAGTATGTCTAAATCC 18444 36 100.0 30 .................................... TCGTCTCTCTAGGCTGATTGGTGACAATCT 18510 36 100.0 30 .................................... GGTGTTAAGCATGAGACTTCCCACTAAAGC 18576 36 100.0 30 .................................... GTGCAAGGTGCTTCAAGTGTAAGGCATCCT 18642 36 100.0 30 .................................... TTAGTGGAAAACCAATGAGTGATCATGATA 18708 36 100.0 30 .................................... ACATATCTTAGAGTAAGTTGGTCACGCAAG 18774 36 100.0 30 .................................... TTGAATAAGTTTCTTTTTCAAAACCTTCTT 18840 36 100.0 30 .................................... GGAACATAACGACTCTAAAACTCAAACCAA 18906 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAGTATATACCTCTAATTATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTGCCACTAGAACTTGATTTTAGTGAGGATTTAAAGAAGTTTCTAAAATTAGAGAATTTGCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCCATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGTACACAGTTAAACATGTTGAACAATTTGCTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTACGGATAGTCTGGTTTATCCGAAAGATGCTGATCACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTGTCG # Right flank : CGCCACTATTCCAGAACCAAACCCACCGTTAGTTTTAGATGGTTGTTAGATCAAATATTTACTCTTTATAGAAATCATTAGTATTAATTAAAATATTGATATTAATGATTTTTGCTTTTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGGCAGACCATGTTATCATTCCCTTTTGGTTTTATTTTTGGTCAAAATATATACCTTCAATAATTTAACTATTATTAATTAAAATTTCTGGTTTTAAAAGGACAATAGAGCAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTACTTTATTTCTTAAATTTAAGAATAGTTATGAAGAAAATGGAATTGTTAATGTTCCTATGCGAAATGGAACAGATTATGATTATTACTTTGATATAGTTGGGAATTACATAGCGAGCTCATTGAATGAAGCGGAGGAATTAAATGAGGACGGTCTAAGACTCGAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 22269-23886 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOC01000034.1 Lactobacillus taiwanensis strain 601a 601a_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 22269 29 100.0 32 ............................. TTTGGTATTTAATTCATTTTCAACACCTTGTG 22330 29 100.0 32 ............................. AATTTTTGTAATTTTTAAAGTAGGGTAGTTGT 22391 29 100.0 32 ............................. ACTGATTAGCGAAATTAAAAAGTTTACGATTA 22452 29 100.0 32 ............................. ATATGCTTGGTCAATTAAATTTAGAAAGTATC 22513 29 100.0 32 ............................. TATTGAACGATCCTTTACTTTTTTCTCTAAAT 22574 29 100.0 32 ............................. GTGTACTAAAAAATTCATCTCGTTCTTCATTG 22635 29 100.0 32 ............................. AACTAACTTGTTAAAAAATGGTGAAATTGCCT 22696 29 100.0 34 ............................. ACAAACTAAGCTTAAACCCATTGTGTGAAAGAGT 22759 29 100.0 32 ............................. AAATAATCTGTAATGTGCTGAACGCCATTTAA 22820 29 100.0 33 ............................. ATCTGGTACATCTTTGGCTTTATAAACTCCATG 22882 29 100.0 32 ............................. ATGATAACACACAAGTGCAATAAAAGCGGTTG 22943 29 100.0 32 ............................. AATCCTGATACCGTGGCGGGTTATGCTATTCT 23004 29 96.6 32 ............................C TTCAGGTATTGACCAAGACGGAAATGCACAAT 23065 29 100.0 32 ............................. GACAGGCAAACCTCCAAAATAATGCTGCTCAT 23126 29 100.0 32 ............................. CGTTTTTACTCTGCCAGATCTTTTATAAAACT 23187 29 96.6 32 .......................A..... AGGTCATTCTTGATATCTCGGCCACTTTTGCC 23248 29 100.0 32 ............................. TACGTTCCTATGGCAATTCGTAAATCAAGCAC 23309 29 100.0 32 ............................. CATCATTTGTGCTGTTGGTGACATTTCGACAC 23370 29 100.0 32 ............................. ATTATTTGGATTACTATACCAAGTAGGTTTAG 23431 29 100.0 32 ............................. CAGGATATGTTGCTTCATAGAAGTCTGAAAGA 23492 29 100.0 32 ............................. ATTTGCATTGCTTTCTGACGATCTTCCATCTC 23553 29 100.0 32 ............................. AACTACGTTACCGCCATCTGCTTTAAAGTTCT 23614 29 100.0 32 ............................. GAATGTGCACGGCTTTTATCCATTCATCGAAG 23675 29 100.0 32 ............................. CTTACGCAGCCAACTCATATCACCCTCCTGAG 23736 29 96.6 32 ............................C GCTATTTAAGATTTATTTTGCCATCAACTGAT 23797 29 93.1 32 .....................A..G.... GCAGCAAACCGAAATTGAAGCTTCACGCATTA 23858 29 93.1 0 ..............A.............C | ========== ====== ====== ====== ============================= ================================== ================== 27 29 99.1 32 GTGTTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATCAAATTTTTTGCCTTATTTTTGATTCTTGTAGGTGGAGTTATTTCTATTATTGGAATTCCAATAGCAAAGTTGCTATTTCTACTAGTATCTCGTCAGCGAGAATATTTAGCTGATATTGGTTCAGCTGATTTAACACGTGAACCAAGCGGCTTAATTTCAGCTCTATCTAAACTTGAAAAGTTAGAAGAAGGGGAGGCTACTCCTCAAATTGGCTCTCAAGATTTGGCGCTACAACATTTATATTTTAATTTTCCAAGTGCCCATAATTGGATTGATCGACTTTTCTCCGATCATCCGCCTTTGGATAAAAGAATTGAACGCCTAGAAAATAGTAATCGGATAAAATAAGATAAGCACGACCAAATATCACGAAATGGTATCTGGTCTTTTTGTTGGGTTAAGCTGTAGGTTAAGCACTTTATTTTTTGTTGATAGAAACTAATGGAAAATGATATTATTTGAATTAGAGAATGGCATTATATCAAGGATCTTTTAGT # Right flank : CATTCCTACTAACTTGATTGATGAAGTAGCCAAGTGTTTTTCACGTTAACCTACGATATTGGCAAAAATAATTTATATTTGAGTGCTTTTTATCAAAATGGCGCAATAAGTAGTCATATGATTTACTACTGGCCATAAAGATCATGGAAAGAGCTAAAAAGTAGTCCTTCTATAAGTGTCCTTTTTGATTTTTAATTAGAGTACTTCCTATATTGTATAAAGGAAAATTATCGAAAATGATGAAGAAAGAAGGTTAACTGTATTATTGGCCCATTGAATTTATTAAGAGGAAGGTACGATTAGAACTATATAAGGTTTATATCAAAGTAATTAAGCTAGGACTTTTTGGAAAAGTAGTGCACGATAATTCCGGATTTAAAAAATTGTATAGTGTAAAAATCAAGTCTTTAATTTCTGTTCCAAAAAGAATGTTGAGTTCAATTCAGCAAAGGTAAAAAGTTTATATCATTCCTTAAGCGCTCTGATAGCGCTTTTTGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 34032-35161 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGOC01000034.1 Lactobacillus taiwanensis strain 601a 601a_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34032 29 96.6 32 ............................C CAAGTACCAGATTTTCTTATTTTTATAAAGCC 34093 29 100.0 33 ............................. GTACCAGTTATTGTTAGAATCTCTGAAATTAAG 34155 29 96.6 32 ............................C TGATCCTGCGGGCAAGGTTGTGAAAATAGATG 34216 29 100.0 32 ............................. TGTTTTGCCAAAGTCATCAAGTGATTTACTGG 34277 29 96.6 32 ............................C ATTTAAAGTTAACCATTGACGGGAGTTTCAAA 34338 29 96.6 32 ............................C ATAGGCTTAAATCCTCACAATGGTAACTACTT 34399 29 96.6 32 ............................C TTCTGCCAGCTTTTTATGATGTCTCCTCGAAT 34460 29 100.0 32 ............................. AAAATTTATTGAAAAAGATGAAAATACATACG 34521 29 100.0 32 ............................. TCCTTATAGCTTTCGCCTTGATTTCTCATCAA 34582 29 100.0 32 ............................. ATTTTGTGCTATCCAAGGATAATCTGAAAGCA 34643 29 96.6 33 ............................C ATGCTTGAATATATTCACGCCAGCAAGTACATG 34705 29 96.6 32 ............................C TTTAGGTAGATCTTTATTCATATCTAATGTTT 34766 29 100.0 32 ............................. GGATTACGTTTATTTTCACCATGTAATTATTA 34827 29 100.0 32 ............................. ATCTTTAGCAGTTCCTCCAGCTACAACGGCCG 34888 29 100.0 32 ............................. CCTTCCTTAGGATCAGCAATAGTAATCATCTT 34949 29 100.0 32 ............................. AAAGGTTTCAGTGCGGCACAAGCTTCGATGGA 35010 29 100.0 32 ............................. TGGAATGTCCAAAGTTCCATAAAAATAGCGAT 35071 29 100.0 32 ............................. GACGTTGACTATTTTGCTGATGCGTATATGAA 35132 29 79.3 0 A......T.....T.......G.A....A | T [35156] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.7 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AAGAATGGAAAAGTTGATATATTTTATAAATTAATTAGGGATGTAAACTGTATTCCGGCCGGTGTAAGTGAATTAACGGGTTTAAATATGAAGATATTAAAATCGAAAGGAAGTAATTTAATCGAAGTTTTAAAAATGCTGAAAGACTTTCTTGGTGATCGAATTATATTAGGTTACAATTTAACCTTTGATATGAGTTTTTTGGATATAGCATATAAAAGAAATAAGATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAATTTCTTGATAATTATAAGTTGAGTACGGTATTGTCTGAATATAAAATTGAAAATCAAAGTCCACATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTGGTCTTGAAGTTGATTAATGAGGGAAAATTAAAGCTTTAAAGTTTGGTAAAAGTAATATATTTGGACGATTACATCTTTTTAAAATGTTGCTATGATAGGATCCTTTTAGT # Right flank : ATGAAAAGTGGCGGTGGCAAAATTATTAACTTGTATTCTCCCAGTAAATAAAAAATGCCACATCATTCAGAGAATACTATATCTATGCATCGTCCTACGTCAATTAGTCGAATGATTTGATAGCTCATATTAGTTGATTTATATAAAAAATATTAAGAGAGAAAATATATGGCATTAGCAATCGACTAAAGACTAATAGGATTTGCTACAATAATGAAAGGACAAGTGAACGTAGTTTATTAGAGAGAAGAACAATGGCGCTATGCTAAAAAAGCGATTTACGAGTCTACTATGAAAGTAGGAGATAGTTAGGTGAGCGCGCATAGAAGTCAGATAGGTGCGGGTGCAAATTTCGCCTTGCTTGTCTTAAAGAAAACGATACTCAATTGAGTGTCGTTTTTATTTTGGTATTTTTTCTCGATGATAGGATTTAAATATTTAATAAAGATAATTCAAATTATCATTCCATAACTAAATACACTAACTCCACTTGTTATGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //