Array 1 1008111-1007481 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046875.1 Streptococcus sp. CNU 77-61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1008110 36 100.0 30 .................................... ATTATTAACGGTGGACAAGGTATGGCAATT 1008044 36 100.0 30 .................................... ACTATGTTTGTACTCTTTTTCTACCCAATC 1007978 36 100.0 30 .................................... CAAGCAGATTTCAATCTCTCTCAAGCTGAC 1007912 36 100.0 30 .................................... CCCTAAAATGGCTACTAAGCTATATGCACA 1007846 36 100.0 30 .................................... TAACTCTTTGAACAATGCGCTTAACGCCAA 1007780 36 100.0 30 .................................... AATCTAATTGTTTTTTATACAAAAAGGAGA 1007714 36 100.0 30 .................................... CAACAAAAAAATCAAAAAAATATGTTGACA 1007648 36 100.0 30 .................................... AGAATACGTTTTACGATTGCTCACGAACTT 1007582 36 100.0 30 .................................... GGTCAATTATGACGTGACGTTTAGTAGTGC 1007516 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGGAAAAATGGTCCACGAG # Right flank : TGGCTACTAAATATGAATATAACAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTATCTTTGCTTAAATAATAGCGTTTTCTGCAAAATTTGTAAAATAATTTGCGGTAGCTGATTTTAGCGATATTTATCGCGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAATTACACAGCTAAAGATGGTGAAACTTACATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1009943-1008720 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046875.1 Streptococcus sp. CNU 77-61 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1009942 36 100.0 30 .................................... GAGACAATTGGATTAGATTAGGCATTGATA 1009876 36 100.0 30 .................................... TTGAAAAACAAACTGCTCTCCAGCGGTTAC 1009810 36 100.0 30 .................................... AAGTATGTTTTACTACTATGTCAAATAAGG 1009744 36 100.0 30 .................................... AGATGTCAATGACAAGCAAGCAATCCTAGA 1009678 36 100.0 30 .................................... CAAGGATGTTTTATATTCTTTCAATCTATG 1009612 36 100.0 30 .................................... AAGTAATAACCGGATACATGTATTTCTTCA 1009546 36 100.0 30 .................................... AGTTAGCTGCGATATTGCGGTTAATGTCAA 1009480 36 100.0 30 .................................... GCGTTCTACTTTTTGAGTGCTTTCTAAAAA 1009414 36 100.0 30 .................................... CAACTCTTTGAACAATGCGCTTAATGCCAA 1009348 36 100.0 30 .................................... AGTTAGCTGCGATATTGCGGTTAATGTCAA 1009282 36 100.0 30 .................................... TATTGGAATTTTTAAGAAGTTTAATAAGCT 1009216 36 100.0 30 .................................... AGGTTTAAATAACCGTCAAGCATTCGCTAA 1009150 36 100.0 30 .................................... TGGTTCTTTATAAAGCTTAATAACTCACAA 1009084 36 100.0 30 .................................... CCGAGGCTATCCGCGTTATTTTTAATACAT 1009018 36 100.0 29 .................................... CTCCACCTCGCTTTTGCAAGTTCGGCAGA 1008953 36 100.0 30 .................................... CTATAATAGTAATAATGAGAACGTTTGCTA 1008887 36 100.0 30 .................................... CAAATAGACTTATTCAAGACGTCAAAATTC 1008821 36 100.0 30 .................................... ATAATCGCTAAGCCGAACCGCTCTGCAAAT 1008755 36 80.6 0 ....................T...AAA...TCT... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATTTAGATGAAGGACTTGCTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACGGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAAATGGTCCACGAG # Right flank : TAAAACTTTAGTGAAAATCACTTTCAATGTTTTTCAAAAATTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCTAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //