Array 1 2026-1476 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821058.1 Corynebacterium sp. HMSC073D01 Scaffold180, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2025 37 100.0 39 ..................................... TCGGTGGGATTGTATTCGGAATTGTAAGAATAACCACCG 1949 37 100.0 36 ..................................... ACGACCGTTTTAGCCGCCGCCACCGTTACTGTTGCG 1876 37 100.0 34 ..................................... GAACGCCGTTTCTCCGTCTGTGGTTTGTTCCTTG 1805 37 100.0 37 ..................................... GTTGACTTGGAAAATTGAGCTGTTGCCTAGTGGGGGT 1731 37 100.0 34 ..................................... CTGTTCACAGGTCCTGATGCTTTGATGCCCCCAA 1660 37 100.0 39 ..................................... CAGCCCAGAAAACAAGCTTTTCACCATCGGCGCGGGTGA 1584 37 100.0 35 ..................................... TTATTGTTATTTCATGAGCCCGTAATGATCCTGTA 1512 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 100.0 36 GTCAGAGACGAAGTCTCGCTGATGAGCGAATTGAAAC # Left flank : TTTGCAGGCGGTAAATGCAGATGCGTGTAGAAAACCGGGATAACATCACTTCCCCACCGATATTCCCCTAACCCCATTGAGTGACTCGGTCCCCACCACAGGCAGCGCCCATTTTCCTAACGCATTTGAAACAACACCAGGGGTGGTTCGAAATATGTCTGAATGGCCGACTAGTGTGATTAGCCTTGACCAGCACAAATAGGATACCCTGCATGAAAACGATGTTCAAAACTGTGTTCAAAACTACGAGGTGTGAATTCCCCTCCCATCCCCGCTGGTCACAACAGCCAAAAATAGGGTAGGGTCAGAGACGAAGTCTCGCTGATGAGCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGTCTCGCTGATGAGCGAATTGAAACTTGGTGTGTTCATCGTCGGCAACGATGTATGCGTTACC # Right flank : TTGCGATGTTCATTTTTTCTCCTTTTTTGTAGTAGGTCAGAGACGAAGTCTCGCTGATGAGCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAAGTCTCGCTGATGAGCGAATTGAAACTTGATAACCTCGATGTCCGCCATTCCTCTGACTCAAGTCAGAGACGAAGTCTCGCTGATGATGCGAAATAGGGGTTGTTGGTACTGGTTGTCTGCGTAGTTGGTGTTATGTGTCACTACTTTTTGCACGCTTGAGGTCATGGCATTGTTCACGGGACCCACCATGACGGTGTTGCAGCGGCTGCAAACAACGATCGCCCATGAGATGAAAAACTCTCACACCCCGCACCGCAGCGGTTTTGATGTGGCACGCACACCACAGTCCACACCGGTGGACATGACGCAGTTCAGTGCCAATGACGTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGACGAAGTCTCGCTGATGAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.50,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 2 18918-19242 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821058.1 Corynebacterium sp. HMSC073D01 Scaffold180, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 18918 37 97.3 28 ....................................T TCAGATGCCGCCTTGAAACTGCGAGAGA 18983 37 100.0 35 ..................................... GGGTTGGCTTTCTTCCAGTTGAGACCAGGAAGCAA 19055 37 100.0 38 ..................................... ACCCGCGGCCACAACTGGGGCGAATCATGATGGTTCGC 19130 37 100.0 39 ..................................... GGGGTAGCTACTGTGCCTTACTGCTTACTCAGCAGCAGG 19206 37 94.6 0 ..T....................A............. | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 98.4 35 GTCAGAGACCAAGTCTCGCTGATGAGCGAATTGAAAC # Left flank : CTACCGGCAGGCAGAACGTCTCTGCTCTGCAATCGAAAGCAATGACCCAACCACGTTTACTGGATTCGTCTGGCGATGAAATACCTCTGCTGTTACGACATTTCCCACAGTGGTCGTCGCGCACGCGTTTCCGCCTACCTCCAAAGCGTGGGCTACCGCATCCAGGAATCGGTATTCCTTGTCGAGTTACCCAGCGACCAGCGTGCCGTGCACGAACAACAAGTCGTTGAAATGTTTGATGAAAGCAGCGATCGACTACTATGGTTGCCGGTGTGCGCAACCTGTTTTTCCAGTGCAGGAAAACATGGGCAGTTTCACATTGATAGCGGAGAACGGGGGTGGTTCGTAGTATGACAAAAAAGTTGAGTAGTGTGATTGGTTCTGACCAGGACTTATTAGGGTATCCTGTGTTAAAACATTGTTCAAAACTGTGTTCAAAACAGAGAGGTGTGAATTTGCCTTGTATCTCCGCTGGTCGCAAAGGCCAAAAATAGGGTAGG # Right flank : CGTGATGTAGTCTTCCGGAGCGTACTGTAACGGAGTGCCTTCGAGTAGCGGTCGCGGGTTGGTCGGGTAACAGTTTGGGGGCTACCCGATAACGGTTTGGGGTGTATCGGGTAGCGGTGTTTTCCAGTGGGTTTATTGTTGCTGGATTCTGAGGTTAGGGCCGTTGAGTTCGATGGTTTCGGCTCCTCCGATGGGACCCGACCCCTTGGATGTGGACACCTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGGGTCTGATAGCCACACCAACTGTGGCGCCGGGTTGTGTTGTAGCGGGCGCACCAGCGAAGCACTTGTCTGCGGCATTCAAGCGGGTTTGCGAAGGTTTTCCGATCTTGACGTACCTCTCTTTTCAACGTGGAGTTAAACGACTGAAGCAAACGCGTTATCAGCACTGGTTCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAGACCAAGTCTCGCTGATGAGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821084.1 Corynebacterium sp. HMSC073D01 Scaffold476, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ CTGCTGGACGTTCTAACTGACCCCGCTGGACTG 62 28 100.0 33 ............................ GCGCCAGCAGATTCGACCGGCAGCTTTAACGAC 123 28 96.4 33 ......G..................... CTGCTCGAAGCGATGAATGTTCATGCTGATTCT 184 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : | # Right flank : CA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 86083-86325 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821082.1 Corynebacterium sp. HMSC073D01 Scaffold385, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================== ================== 86083 24 100.0 48 ........................ CAGCGACGGGGGTTGCGTCCGCCCCGCCGGAGCCGGTTGTTTCCCCTC 86155 24 100.0 50 ........................ CAGCGACGCGCGAGTGATTTTGTCGACGGTGCTTAGGGTGTTGAGCCCTC 86229 24 100.0 49 ........................ CAGCGACCGAGCTCGCCAGGCTTGTGCAGGGTGTACCCGTCCCGCCCTC 86302 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ================================================== ================== 4 24 100.0 49 AATGAAAGGCTGCTCCCGAAAGAG # Left flank : GTCTCCATGTCGGCTGCGAGGCCCGCCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGAAAGGCTGCTCCCGAAAGAGCAGCGACATCTCCACGCCGAAGATGGTGACGAAATGGAGCGCGTCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACAATAGCGCGGCGTGCTTCTGTGAGGAATGGCTGGTTGCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGTCGAGGCCGTCGCCTATCTCAGCCTCCACGTCCTGTGCCCTCAATGAAAGGCTGCTCCCGAAAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTCGCCGTCGATCCACACGACCTCAGGATCCCACACCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTTGCCGACGGTGAGAACGTGGAGAGGTGGCATAGAAACCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTTAGCTAGGTAGCTGTCTGCGGGAAGTTTCACATAGCCGCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCCCTCAATGAAAGGCTGCTCCCGAAAGAGTAGCGACGCCGGCCTTGACCA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAAGGCTGCTCCCGAAAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 86775-87107 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821082.1 Corynebacterium sp. HMSC073D01 Scaffold385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================= ================== 86775 38 97.4 37 .............................T........ CGGCCTTGACCATAATGCCGGGGTGGTGGACGTGACC 86850 38 100.0 39 ...................................... AAGCGGTGGTCACGCCATGGCTGCTGTAGCCAGACGTAA 86927 38 100.0 32 ...................................... TGCGGGGCCGAGTCGGTCGTAGCGGATTTTTT 86997 38 100.0 35 ...................................... TTCCCTTCCGCTTGGTGTACGTACCCAGGATCTCC 87070 38 94.7 0 ....................................CA | ========== ====== ====== ====== ====================================== ======================================= ================== 5 38 98.4 36 CCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGC # Left flank : TGTGCAGGGTGTACCCGTCCCGCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTCGCCGTCGATCCACACGACCTCAGGATCCCACACCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTTGCCGACGGTGAGAACGTGGAGAGGTGGCATAGAAACCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTTAGCTAGGTAGCTGTCTGCGGGAAGTTTCACATAGCCGCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGT # Right flank : AAATTATCAACAAGATAGTTCCCCCTCGTGGAACCTGCCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGGCTGCTCCCGAAAGAGCAGCGACACTGAAAAGCCCAGATTTGGTCTCCTCTACGATCGCCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCCGCACTCTCAGTGGCTATAGTCTAAGAATTAGAACCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTAACATCGACGCGGATACCTTTTTCGTAGTTGTCACCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCTTAGGGAGGATTACCCGGAGGAATACGCACAGGCTCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACAGTTCGACGGACGTTT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 3 87340-87953 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821082.1 Corynebacterium sp. HMSC073D01 Scaffold385, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 87340 36 100.0 35 .................................... CCGCACTCTCAGTGGCTATAGTCTAAGAATTAGAA 87411 36 100.0 36 .................................... CTAACATCGACGCGGATACCTTTTTCGTAGTTGTCA 87483 36 100.0 36 .................................... CTTAGGGAGGATTACCCGGAGGAATACGCACAGGCT 87555 36 100.0 39 .................................... AGTTCGACGGACGTTTCTACCGTTCTCGTTCGTCCTGCG 87630 36 100.0 35 .................................... TTACGTGCCACGGCGGTGTCCTTAGCCTAGTTTTT 87701 36 100.0 36 .................................... TTGATGGACAACCGCTGGGTAGGTCGCAGGGACTGG 87773 36 100.0 34 .................................... CTGGTGAGATTGGGGGGAAAAAGGCCCTCGAAAA 87843 36 100.0 39 .................................... CGGACAAGCGTCGATTTACCGAGTCCTGGCAGCGAAAGA 87918 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 36 CCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGAC # Left flank : GGACGTGACCCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGCAAGCGGTGGTCACGCCATGGCTGCTGTAGCCAGACGTAACCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGCTGCGGGGCCGAGTCGGTCGTAGCGGATTTTTTCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACGCTTCCCTTCCGCTTGGTGTACGTACCCAGGATCTCCCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACCAAATTATCAACAAGATAGTTCCCCCTCGTGGAACCTGCCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGGCTGCTCCCGAAAGAGCAGCGACACTGAAAAGCCCAGATTTGGTCTCCTCTACGATCGC # Right flank : CACACCATCGCCGGAGCTTCGCCGGGCGGTGCTTTCCCTCAATGAAAGGCTGCTCCCGAAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGAAAGGCTGCTCCCGAAAGAGCAGCGACGTAACCGGATTATTTTCGATATGGCATAGGTAAATCCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGACAGCCACTGCAAAAGCAGGGCGATAAACAGGGTTTTTGTAACACAAAACGAGCGCTAGGTTAGACGATAGCATTCGGAGACTTAATCTTCATCCTTCACTATTGAATTTTCGGGTTTGAACAGAGATTTTGCTGCAACGAGCGCGACCCGGGTTTTGCGTGATACCGGCGCGCTCGGAAATCGAGGTGAATCTGGCGATAGCCGTTAGAGGATCAAGACATCATTGTCTGTCACCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTCAATGAAAGGCTGCTCCCGAAAGAGCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 62707-62374 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62706 28 100.0 33 ............................ GCCACCATCCGAGCAACCTCGTCAAGTGCAGTC 62645 28 100.0 33 ............................ CATGGCGCAGTAGGGGCACTGCGGGTCAGAATA 62584 28 100.0 33 ............................ GTGTTACATGTAAGCAAAAAGGGAAGGGTAAAA 62523 28 100.0 33 ............................ CCCTCATTGCCGGGGCCACGCAGCTGGGTGCGG 62462 28 100.0 33 ............................ CCCCGACCTGGAAACCGGCGAAGCCCCAGCCAA 62401 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCTGTTCCGCTATCTTTTCTGGTGTGATGGCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCCCAGCAGGCCCTGCAGCAGGTTTTTGTGATCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGCTGAGACGGCACGAAGCATTGATACGGGCATCTGCCCCGCACCTGCGGGGATGAGCCTGTAACCCAGGGGTACATGCAACCCAGGGTGACATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCTGCCCCGCACCTGCGGGGATGAGCCCCTCACCAGGAACTCATGCGAATCCACATGCTCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGGCCAGGTCACCTCCCGCGAATTCACCTGCATCTGCCCCGCACCTGCGGGGATGAGCCGCAACCATCCCGGCCACCCCATTCAACGCCTGCATCTGCCCCGCACCTGCGGGGATGTGCCTTTTATATGGCGTGGCGTAGTTTCTACCTCTTAATCTGCCCCGCACCTGCGGGGATAACTTGTAGTAAACTTCGCGCCACGGTGACCAATGAAGGCAGTCCAGCATTTTGTTTGCATTTGTGCCGATTCTGCCATCGGCTATCACTACTCCACTACTATGAGCGATATGACCACTCCTGATAGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63019-62808 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63018 28 100.0 33 ............................ CCCCAGCAGGCCCTGCAGCAGGTTTTTGTGATC 62957 28 100.0 33 ............................ CGCGCTGAGACGGCACGAAGCATTGATACGGGC 62896 28 100.0 33 ............................ TGTAACCCAGGGGTACATGCAACCCAGGGTGAC 62835 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TGCCCCGCACCTGCGGGGATGAGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGCCCCGCACCTGCGGGGATGAGCCCTCTTTGATCGCAAGGATGGCTTGCAGAAGGAAATCTGCCCCGCACCTGCGGGGATGAGCCGCTGCTGTTCGAGTAGGCGTTTGCGGTCTGTGAATCTGCCCCGCACCTGCGGGGATGAGCCGGTCACCAAATTCGGGAATGGCAGATCCGTATCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCTGTTCCGCTATCTTTTCTGGTGTGATGGCACC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCGCCACCATCCGAGCAACCTCGTCAAGTGCAGTCATCTGCCCCGCACCTGCGGGGATGAGCCCATGGCGCAGTAGGGGCACTGCGGGTCAGAATAATCTGCCCCGCACCTGCGGGGATGAGCCGTGTTACATGTAAGCAAAAAGGGAAGGGTAAAAATCTGCCCCGCACCTGCGGGGATGAGCCCCCTCATTGCCGGGGCCACGCAGCTGGGTGCGGATCTGCCCCGCACCTGCGGGGATGAGCCCCCCGACCTGGAAACCGGCGAAGCCCCAGCCAAATCTGCCCCGCACCTGCGGGGATGAGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 63391-63180 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63390 28 100.0 33 ............................ CTCTTTGATCGCAAGGATGGCTTGCAGAAGGAA 63329 28 100.0 33 ............................ GCTGCTGTTCGAGTAGGCGTTTGCGGTCTGTGA 63268 28 100.0 33 ............................ GGTCACCAAATTCGGGAATGGCAGATCCGTATC 63207 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : ATGACCTGCCCCGCACCTGCGGGGATGAGCCTACACGAAACCTGTTTTCGTCTCCCCCTATCTAATCTGCCCCGCACCTGCGGGGATGAGCCGCAGATCCGGGTCAATGTCCGCCACGCCGTCATATCTGCCCCGCACCTGCGGGGATGAGCCGCGTCCACGGGGGCGGGTGCAGCGTCCAAGCAGATCTGCCCCGCACCTGCGGGGATGAGCCCATGTCACCGAGTTTGCTAACCGACTGTTGGCGATCTGCCCCGCACCTGCGGGGATGAGCCCCAGGTGTCGCCGGGGCGCTCACCACGAGTGGAATCTGCCCCGCACCTGCGGGGATGAGCCCCGGAATCGCAATCGGTTAGCTGGGTGACATCCATCTGCCCCGCACCTGCGGGGATGAGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCTGTTCCGCTATCTTTTCTGGTGTGATGGCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCCCAGCAGGCCCTGCAGCAGGTTTTTGTGATCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGCTGAGACGGCACGAAGCATTGATACGGGCATCTGCCCCGCACCTGCGGGGATGAGCCTGTAACCCAGGGGTACATGCAACCCAGGGTGACATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 64193-63494 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64192 28 100.0 33 ............................ CTTTTCGAGGAGTACCTTCCCAACGTCACTGCT 64131 28 100.0 33 ............................ CGCGATCACTGCGCTTCGCGTAAGTTGGTATTG 64070 28 100.0 33 ............................ CCACAGCCTTAGCCGCCGCATCCTTCGCCGCAG 64009 28 100.0 33 ............................ CCCCTGTTCGGAGTGCGCTCCGGTGCGCAGATA 63948 28 100.0 33 ............................ GGGCGAGGGTGAGCTCCGTGTTGTAGGTGTATG 63887 28 96.4 33 .C.......................... TACACGAAACCTGTTTTCGTCTCCCCCTATCTA 63826 28 100.0 33 ............................ GCAGATCCGGGTCAATGTCCGCCACGCCGTCAT 63765 28 100.0 33 ............................ GCGTCCACGGGGGCGGGTGCAGCGTCCAAGCAG 63704 28 100.0 33 ............................ CATGTCACCGAGTTTGCTAACCGACTGTTGGCG 63643 28 100.0 33 ............................ CCAGGTGTCGCCGGGGCGCTCACCACGAGTGGA 63582 28 100.0 33 ............................ CCGGAATCGCAATCGGTTAGCTGGGTGACATCC 63521 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAATCTGCCCCGCACCTGCGGGGATGAGCCCTACCCAGCCATGTTCCCGCATGCCCGCAGGAGATCTGCCCCGCACCTGCGGGGATGAGCCCCGGTCGCGCTCGACAAGTAGGGATTCCACCTCATCTGCCCCGCACCTGCGGGGATGAGCCCCGCTTGACAGCCTTGCAGCCGCGCGTCCATTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCCATCCCCGGCCGCCGCGCCGGGGCATTATTTT # Right flank : CTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGCCCCGCACCTGCGGGGATGAGCCCTCTTTGATCGCAAGGATGGCTTGCAGAAGGAAATCTGCCCCGCACCTGCGGGGATGAGCCGCTGCTGTTCGAGTAGGCGTTTGCGGTCTGTGAATCTGCCCCGCACCTGCGGGGATGAGCCGGTCACCAAATTCGGGAATGGCAGATCCGTATCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCTGTTCCGCTATCTTTTCTGGTGTGATGGCACCATCTGCCCCGCACCTGCGGGGATGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 65123-64729 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65122 28 100.0 33 ............................ CCAGCTCAACTCTCTGGTGAAAGAATCGCGGCA 65061 28 100.0 33 ............................ GGGCGAGGTGCTCGTAGCGCGGGAGCTCGTGGG 65000 28 100.0 33 ............................ CGATAAGAATCGCCAGGGCCAGTGGGTTCAAGG 64939 28 100.0 33 ............................ CGAAATGCGCATCACAGCCCCAGCCTCAATCGC 64878 28 100.0 33 ............................ CGGCACCGAGGTTACCGGAGCGGAGCACAGCAT 64817 28 100.0 33 ............................ TCAACGTGTACGGGGTGCCATCGTAGCCGGTGA 64756 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCACGGGCAGGCCAATCGAGAAATCAACGCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCATCATGTCGAGGGTTGTTTCCACCGTGGCTGATCTGCCCCGCACCTGCGGGGATGAGCCCGTCATGAAATTACCTTTCTCCGCTGCGACCATATCTGCCCCGCACCTGCGGGGATGAGCCCCGACGGTGGTCACCAGCGGATCGGCGGCGGCCATCTGCCCCGCACCTGCGGGGATGAGCCTAACCGTGGAGGCGGATTGTTTGGTCGGCGGGGATCTGCCCCGCACCTGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGTATTTGTACGCACTAAGGGGCACCACAACCATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAATCTGCCCCGCACCTGCGGGGATGAGCCCTACCCAGCCATGTTCCCGCATGCCCGCAGGAGATCTGCCCCGCACCTGCGGGGATGAGCCCCGGTCGCGCTCGACAAGTAGGGATTCCACCTCATCTGCCCCGCACCTGCGGGGATGAGCCCCGCTTGACAGCCTTGCAGCCGCGCGTCCATTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 65555-65283 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65554 28 100.0 33 ............................ CCACGGGCAGGCCAATCGAGAAATCAACGCACC 65493 28 100.0 33 ............................ CCATCATGTCGAGGGTTGTTTCCACCGTGGCTG 65432 28 100.0 33 ............................ CGTCATGAAATTACCTTTCTCCGCTGCGACCAT 65371 28 100.0 33 ............................ CCGACGGTGGTCACCAGCGGATCGGCGGCGGCC 65310 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : GCATCTGCCCCGCACCTGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCTCGGGGACAATCCGGTTTTCCGTTCTTTTTCCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGTGCCGCGTCGTTGCTGGTCCAACGACGGTATCTGCCCCGCACCTGCGGGGATGAGCCGTTAAGTTCACCACCAAGAAAAACGAGCGCATTATCTGCCCCGCACCTGCGGGGATGAGCCCCGAAACCAGAAGAAAAGGAAAAGAGGTTTTCCATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TAACCGTGGAGGCGGATTGTTTGGTCGGCGGGGATCTGCCCCGCACCTGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCAGCTCAACTCTCTGGTGAAAGAATCGCGGCAATCTGCCCCGCACCTGCGGGGATGAGCCGGGCGAGGTGCTCGTAGCGCGGGAGCTCGTGGGATCTGCCCCGCACCTGCGGGGATGAGCCCGATAAGAATCGCCAGGGCCAGTGGGTTCAAGGATCTGCCCCGCACCTGCGGGGATGAGCCCGAAATGCGCATCACAGCCCCAGCCTCAATCGCATCTGCCCCGCACCTGCGGGGATGAGCCCGGCACCGAGGTTACCGGAGCGGAGCACAGCATATCTGCCCCGCACCTGCGGGGATGAGCCTCAACGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 65925-65714 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 65924 28 96.4 33 N........................... CTCGGGGACAATCCGGTTTTCCGTTCTTTTTCC 65863 28 100.0 33 ............................ CGCGTGCCGCGTCGTTGCTGGTCCAACGACGGT 65802 28 100.0 33 ............................ GTTAAGTTCACCACCAAGAAAAACGAGCGCATT 65741 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CGCGGTGACCTGACTAAATGGTTGTTCCAGATTTCCCCAACCGTTTTTGTTGGGCGACCCAGTGCTCGGATCCGGGAGGCAATCTGGAAACGCACGGTGGAACTGTGCAAAGACGGATCTGCCATTTTGGTCTGGAGCTCCGATAACGAACAAGGTTTAGAGTTTCGTACCCATCGGACCGAATGGCAACCCGCCGACTACGACGGCCTCACTCTCATACGCCGCCCCGCGCGACGGCCTCCCCCACAGCGGCGCACCGGCTGGAGCAAAGCCCGCAACATGTACCGCTCCCGCAAACGGTAGCCGAAACTAGCAAAAACAAAGCTAAAGCCAAAACCCAAAATCGGCGCTCATCTCCCCTGCTCAGATAGCATCTGCCCCGCACCTGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGAAACCAGAAGAAAAGGAAAAGAGGTTTTCCATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCACGGGCAGGCCAATCGAGAAATCAACGCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCATCATGTCGAGGGTTGTTTCCACCGTGGCTGATCTGCCCCGCACCTGCGGGGATGAGCCCGTCATGAAATTACCTTTCTCCGCTGCGACCATATCTGCCCCGCACCTGCGGGGATGAGCCCCGACGGTGGTCACCAGCGGATCGGCGGCGGCCATCTGCCCCGCACCTGCGGGGATGAGCCTAACCGTGGAGGCGGATTGTTTGGTCGGCGGGGATCTGCCCCGCACCTGCGGGGATGAGCNNNNNNNNN # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 75780-75569 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75779 28 92.9 33 ..T.........A............... GCCAGCCACCTTGCTCGAAGCCACAGAATCAAC 75718 28 100.0 33 ............................ TGAGGCTGTCGCACCGGGTGGTACAGGCTCCGA 75657 28 100.0 33 ............................ CTGCGTTACCGTTGAACTGACTTTCATGCTTCA 75596 28 96.4 0 ...........................A | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGTCCCACTTTTGCCCTTCGGGGCATCGGGGTCGATCTGCCCCGCACCTGCGGGGATGAGCCCCGCATCAACATGTATTTCGAGTACAACCGCCCATCTGCCCCGCACCTGCGGGGATGAGCCCAGGAATTGGTGCCGTGGATGCGGGTGGCAGGGATCTGCCCCGCACCTGCGGGGATGAGCCCGTTCGTAGGGGCCTTGGCCTTTAATTTACGAAATCTGCCCCGCAACTGCGGGGATGAGCCACCATCACCCGCATCTTCCCCTCTGTGCTCCTTATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAGAGCACCCGACCATCGGCCAGGTGCTC # Right flank : CACATTGCTATCTAGCTCCACTCCCCTCGCCATAAACTGGCCTGAATCAGCTTCGATTCGACCGGCCAGGGGCTTAGTGTTAGGTGTTTCCGGTTTATCACCTCAATATGTCCTGGGACTCAGAATTATCTAGTTCGGTTAGCTCGGTGGCAAAGAAAAGTCGGCAATTTTCGAAATTCTCATTAACCGTGTGCACTCGCATTTTATGATGAGAATTATGTCAAGGTTTAGCTCGGCATCCGAGAAAGTGCTCGCCAGTTTTGAGCCACAAATCCGTTCATTTTGGGCTAAGACTCCGGAAGACTCCACGGATAAGAGTGGGGATTTCTTGTCGGTACCCCAGCATCTTGTCGATGCCGCGTGCGTCGCCGATGAGCTTTGGGAGACGTGGCTAAGTAATCAAACAAGAGCGTTTCTTCGTCGGGAGACTTCAATGACTGAGCAGGCGCTGCGTAGCCTGGTCACTTTTGTCGTCGGGACGCATGACATCGGGAAAATAT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 76246-75974 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76245 28 96.4 33 N........................... GTCCCACTTTTGCCCTTCGGGGCATCGGGGTCG 76184 28 100.0 33 ............................ CCGCATCAACATGTATTTCGAGTACAACCGCCC 76123 28 100.0 33 ............................ CAGGAATTGGTGCCGTGGATGCGGGTGGCAGGG 76062 28 100.0 33 ............................ CGTTCGTAGGGGCCTTGGCCTTTAATTTACGAA 76001 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGGGCTACTCCAATTTTGAGGCGGTAGTGGAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCCATCATCGGGTTTGATAAGAATCTGGTCGACATCTGCCCCGCACCTGCGGGGATGAGCCCTCGGAAATTGTTGGGGCAATGGGAACCACACGATCTGCCCCGCACCTGCGGGGATGAGCCCCTGCCTCCCTCAGCGCCTTTCCGACGAGGCCGATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACCATCACCCGCATCTTCCCCTCTGTGCTCCTTATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGAGAGCACCCGACCATCGGCCAGGTGCTCATTTGCCCCGCAACTGCGGGGATGAGCCGCCAGCCACCTTGCTCGAAGCCACAGAATCAACATCTGCCCCGCACCTGCGGGGATGAGCCTGAGGCTGTCGCACCGGGTGGTACAGGCTCCGAATCTGCCCCGCACCTGCGGGGATGAGCCCTGCGTTACCGTTGAACTGACTTTCATGCTTCAATCTGCCCCGCACCTGCGGGGATGAGCACACATTGCTATCTAGCTCCACTCCCCTCGCCATAAACTGGCCTGAATCAGCTTCGATTCGACCGGCCAGGGGCTTAGTGTTAGGTGTTTCCGGTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 76557-76346 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76556 28 100.0 33 ............................ CCCATCATCGGGTTTGATAAGAATCTGGTCGAC 76495 28 100.0 33 ............................ CTCGGAAATTGTTGGGGCAATGGGAACCACACG 76434 28 100.0 33 ............................ CCTGCCTCCCTCAGCGCCTTTCCGACGAGGCCG 76373 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TGGCTATCTGCCCCGCACCTGCGGGGATGAGCCCCTTCCACCACCGGGCAGTAGCCCACCAAACCGATCTGCCCCGCACCTGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACCTGCGGGGATGAGCCCCGGGCGGTACAGACCACGGCACTACCGAACCGATCTGCCCCGCACCTGCGGGGATGAGCCCTTACCAGATAAATTCGCAATCTGGCAGCTATCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGGGCTACTCCAATTTTGAGGCGGTAGTGGAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGTCCCACTTTTGCCCTTCGGGGCATCGGGGTCGATCTGCCCCGCACCTGCGGGGATGAGCCCCGCATCAACATGTATTTCGAGTACAACCGCCCATCTGCCCCGCACCTGCGGGGATGAGCCCAGGAATTGGTGCCGTGGATGCGGGTGGCAGGGATCTGCCCCGCACCTGCGGGGATGAGCCCGTTCGTAGGGGCCTTGGCCTTTAATTTACGAAATCTGCCCCGCAACTGCGGGGATGAGCCACCATCACCCGCATCTTCCCCTCTGTGCTCCTTATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 11 76866-76716 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76865 28 92.9 33 NN.......................... CCGGGCGGTACAGACCACGGCACTACCGAACCG 76804 28 100.0 33 ............................ CTTACCAGATAAATTCGCAATCTGGCAGCTATC 76743 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 97.6 34 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TATCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCTGCTCGCCAAACTGAAAGATGCCCCCGACCAGATCTGCCCCGCACCTGCGGGGATGAGCCCCATGAGTGCGACGGAGCGGCCCCGTGTGCTGGATCTGCCCCGCACCTGCGGGGATGAGCCGGCTATGTGGAGCAGGCTGAGGCTGCTGTGGCTATCTGCCCCGCACCTGCGGGGATGAGCCCCTTCCACCACCGGGCAGTAGCCCACCAAACCGATCTGCCCCGCACCTGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGCGGGCTACTCCAATTTTGAGGCGGTAGTGGAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCCATCATCGGGTTTGATAAGAATCTGGTCGACATCTGCCCCGCACCTGCGGGGATGAGCCCTCGGAAATTGTTGGGGCAATGGGAACCACACGATCTGCCCCGCACCTGCGGGGATGAGCCCCTGCCTCCCTCAGCGCCTTTCCGACGAGGCCGATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 12 77174-76963 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77173 28 100.0 33 ............................ CCATGAGTGCGACGGAGCGGCCCCGTGTGCTGG 77112 28 100.0 33 ............................ GGCTATGTGGAGCAGGCTGAGGCTGCTGTGGCT 77051 28 100.0 33 ............................ CCTTCCACCACCGGGCAGTAGCCCACCAAACCG 76990 28 96.4 0 ...........................N | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATCTGCCCCGCACCTGCGGGGATGAGCCCATCATCCGAATCCGGCAGAACATGCGCGTACGATCTGCCCCGCACCTGCGGGGATGAGCCGAAAGGGACGGGTCGGGTCGGGTCGGGTCGGGGATCTGCCCCGCACCTGCGGGGATGAGCCCTGAAAAGTGCATAGCGCCAGCAAAATACTTGCATCATCCCCGCACCTGCGGGGATGAGCCTACAGGGCAGCCGAGGAAATTTATGGCCCATATCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCTGCTCGCCAAACTGAAAGATGCCCCCGACCAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACCTGCGGGGATGAGCCCCGGGCGGTACAGACCACGGCACTACCGAACCGATCTGCCCCGCACCTGCGGGGATGAGCCCTTACCAGATAAATTCGCAATCTGGCAGCTATCATCTGCCCCGCACCTGCGGGGATGAGCCCGCGGGCTACTCCAATTTTGAGGCGGTAGTGGAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCCCATCATCGGGTTTGATAAGAATCTGGTCGACATCTGCCCCGCACCTGCGGGGATGAGCCCTCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 13 77925-77714 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77924 28 96.4 33 N........................... CCCTCGGCTGCGCCGTCAAAAACCTTGAAGCCC 77863 28 100.0 33 ............................ CCATGCCAGCCTTTCTAGTTCATCAGAACAGTT 77802 28 100.0 33 ............................ CTGACCACGTCGACCCCGGCGAGGGTTTCCCAA 77741 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CTGCCCCGCACCTGCGGGGATGAGCCGCAGCAGACGGCAAAGCAAACATGCTCGTTGTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTGCCCCGCACCTGCGGGGATGAGCCTCATGCTCCATACGACCCGAATACGAACGAACCATCTGCCCCGCACCTGCGGGGATGAACCGAAGCAGCTGCAGCAGCAAGCTAACAGCCTGCTATCTGCCCCGCACCTGCGGGGATGAGCCTGAGCAGGACAAACTGAACTAAACGGTCGTGTAATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATCTGCCCCGCACCTGCGGGGATGAGCCCATCATCCGAATCCGGCAGAACATGCGCGTACGATCTGCCCCGCACCTGCGGGGATGAGCCGAAAGGGACGGGTCGGGTCGGGTCGGGTCGGGGATCTGCCCCGCACCTGCGGGGATGAGCCCTGAAAAGTGCATAGCGCCAGCAAAATACTTGCATCATCCCCGCACCTGCGGGGATGAGCCTACAGGGCAGCCGAGGAAATTTATGGCCCATATCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 14 78235-78024 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78234 28 100.0 33 ............................ TCATGCTCCATACGACCCGAATACGAACGAACC 78173 28 96.4 33 .........................A.. GAAGCAGCTGCAGCAGCAAGCTAACAGCCTGCT 78112 28 100.0 33 ............................ TGAGCAGGACAAACTGAACTAAACGGTCGTGTA 78051 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 99.1 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TGCCCCGCACCTGCGGGGATGAGCCGTCGACGCCACAAACAAAGATTCCTGAGAAAAAATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCAGATAAAACGCCTGCAAGATAATGCTGAATTGATCTGCCCCGCACCTGCGGGGATGAGCCCGACAGGTGGCGAACAGAAAATGATCACCATACATCTGCCCCGCACCTGCGGGGATGAGCCGCAGCAGACGGCAAAGCAAACATGCTCGTTGTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCCCTCGGCTGCGCCGTCAAAAACCTTGAAGCCCATCTGCCCCGCACCTGCGGGGATGAGCCCCATGCCAGCCTTTCTAGTTCATCAGAACAGTTATCTGCCCCGCACCTGCGGGGATGAGCCCTGACCACGTCGACCCCGGCGAGGGTTTCCCAAATCTGCCCCGCACCTGCGGGGATGAGCCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACATCTGCCCCGCACCTGCGGGGATGAGCCCATCATCCGAATCCGGCAGAACATGCGCGTACGATCTGCCCCGCACCTGCGGGGA # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 15 78549-78338 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78548 28 100.0 33 ............................ CAGATAAAACGCCTGCAAGATAATGCTGAATTG 78487 28 100.0 33 ............................ CGACAGGTGGCGAACAGAAAATGATCACCATAC 78426 28 100.0 33 ............................ GCAGCAGACGGCAAAGCAAACATGCTCGTTGTC 78365 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : GAACCGATCTGCCCCGCACCTGCGGGGATGAGCCCAATGAACCAGACATCGGGGGGGATATGGTTAAATCTGCCCCGCACCTGCGGGGATGAGCCCTCAGTAGCAATTTTTTGGGCTATTTCAAAATCATCTGCCCCGCACCTGCGGGGATGAGCCCGCACGCTCAGCGTCCCCCAAGGCCTCCAAAACATCTGCCCCGCACCTGCGGGGATGAGCCCTGTCGAAGAATAGCAACGTCGGAAACGCTTGGATCTGCCCCGCACCTGCGGGGATGAGCCGCATCGACGAAATCAACCGCGAAACCGGCAACAATCTGCCCCGCACCTGCGGGGATGAGCCGTCGACGCCACAAACAAAGATTCCTGAGAAAAAATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTGCCCCGCACCTGCGGGGATGAGCCTCATGCTCCATACGACCCGAATACGAACGAACCATCTGCCCCGCACCTGCGGGGATGAACCGAAGCAGCTGCAGCAGCAAGCTAACAGCCTGCTATCTGCCCCGCACCTGCGGGGATGAGCCTGAGCAGGACAAACTGAACTAAACGGTCGTGTAATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCCCTCGGCTGCGCCGTCAAAAACCTTGAAGCCCATCTGCCCCGCACCTGCGGGGATGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 16 79348-78710 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79347 28 100.0 33 ............................ CTCCTCGGCCGTAGCCGTCCCAGACTCGCGAAG 79286 28 100.0 33 ............................ CTGGAACCAGCTCAGCGATGCTATTCCGGGCGC 79225 28 100.0 33 ............................ CTGGTGACAGATTCGATAGATTCGCGGATTACC 79164 28 100.0 33 ............................ CCCCCGCACCCATTCGAGCAACCCAAACAATCA 79103 28 100.0 33 ............................ CCCACTGCCTGCTGACGTTGCCGACCTGAACCG 79042 28 100.0 33 ............................ CAATGAACCAGACATCGGGGGGGATATGGTTAA 78981 28 100.0 33 ............................ CTCAGTAGCAATTTTTTGGGCTATTTCAAAATC 78920 28 100.0 33 ............................ CGCACGCTCAGCGTCCCCCAAGGCCTCCAAAAC 78859 28 100.0 33 ............................ CTGTCGAAGAATAGCAACGTCGGAAACGCTTGG 78798 28 100.0 33 ............................ GCATCGACGAAATCAACCGCGAAACCGGCAACA 78737 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : AATCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCACCGCGATTTGCAGCGTGGGGGATATTTGGGATCTGCCCCGCACCTGCGGGGATGAGCCGTAGCTGCCCAAGTTGCTGCATCGCCTGGGTGGATCTGCCCCGCACCTGCGGGGATGAGCCCGTATAAGGGGGTTTTAGAACGGGGGCTGCGCAATCTGCCCCGCACCTGCGGGGATGAGCCGCAATGGGCCTATAGCGAACTCGAAATTTATAAATCTGCCCCGCACCTGCGGGGATGAGCCTGGGCACAACAAAACGCGTTCAACAACAGAAAAATCTGCCCCGCACCTGCGGGGATGAGCCCCGTTAGGGAGTTGTCACACTCACCACCCGCCCATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : GTCGACGCCACAAACAAAGATTCCTGAGAAAAAATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCAGATAAAACGCCTGCAAGATAATGCTGAATTGATCTGCCCCGCACCTGCGGGGATGAGCCCGACAGGTGGCGAACAGAAAATGATCACCATACATCTGCCCCGCACCTGCGGGGATGAGCCGCAGCAGACGGCAAAGCAAACATGCTCGTTGTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATCTGCCCCGCACCTGCGGGGATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : ATCTGCCCCGCACCTGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 17 79902-79508 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79901 28 100.0 33 ............................ CAGCATTTGGAGCCAGCCGAAGGCGTAATCACC 79840 28 100.0 33 ............................ CCACCGCGATTTGCAGCGTGGGGGATATTTGGG 79779 28 100.0 33 ............................ GTAGCTGCCCAAGTTGCTGCATCGCCTGGGTGG 79718 28 100.0 33 ............................ CGTATAAGGGGGTTTTAGAACGGGGGCTGCGCA 79657 28 100.0 33 ............................ GCAATGGGCCTATAGCGAACTCGAAATTTATAA 79596 28 100.0 33 ............................ TGGGCACAACAAAACGCGTTCAACAACAGAAAA 79535 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : GCCATCATCTGCCCCGCACCTGCGGGGATGAGCCGGAACCGGCATCGACGGCTTCGTCTAGTCGTGGATCTGCCCCGCACCTGCGGGGATGAGCCCATCGCCGAGGGGTGGAGAATCCGCGATTATTTATCTGCCCCGCACCTCCGGGGATGAGCCCGGCCTGGGTTCTGAAGGTGCTCAGAAGGTCTTATCTGCCCCGCACCTGCGGGGATGAGCCGAGACGCCACGAACAGCTACGTGCCCTCGGATTATCTGCCCCGCACCTGCGGGGATGAGCCGGTCGCTGATGCTGCTATCGAAGCCGGATACCCATCTGCCCCGCACCTGCGGGGATGAGCCCGAGGCACCGTGCTGGCGGTGTCGCTTGTTGCTATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGTTAGGGAGTTGTCACACTCACCACCCGCCCATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGCCCCGCACCTGCGGGGATGAGCCCTCCTCGGCCGTAGCCGTCCCAGACTCGCGAAGATCTGCCCCGCACCTGCGGGGATGAGCCCTGGAACCAGCTCAGCGATGCTATTCCGGGCGCATCTGCCCCGCACCTGCGGGGATGAGCCCTGGTGACAGATTCGATAGATTCGCGGATTACCATCTGCCCCGCACCTGCGGGGATGAGCCCCCCCGCACCCATTCGAGCAACCCAAACAATCAATCTGCCCCGCACCTGCGGGGATGAGCCCCCACTGCCTGCTGACGTTGCCGACCTGAACCGATCTGCCCCGCACCTGCGGGGATGAGCCCAATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 80457-80002 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 80456 28 100.0 33 ............................ GCCATCATCACAGGAGCACTATTCGCAGCCATC 80395 28 100.0 33 ............................ GGAACCGGCATCGACGGCTTCGTCTAGTCGTGG 80334 28 100.0 33 ............................ CATCGCCGAGGGGTGGAGAATCCGCGATTATTT 80273 28 96.4 33 ...............C............ CGGCCTGGGTTCTGAAGGTGCTCAGAAGGTCTT 80212 28 100.0 33 ............................ GAGACGCCACGAACAGCTACGTGCCCTCGGATT 80151 28 100.0 33 ............................ GGTCGCTGATGCTGCTATCGAAGCCGGATACCC 80090 28 100.0 33 ............................ CGAGGCACCGTGCTGGCGGTGTCGCTTGTTGCT 80029 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.5 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : AAGTGATCTGCCCCGCACCTGCGGGGATGAGCCTTCTCCGACGGCAACTACGACGAAGCGGTCAAAATCTGCCCCGCACCTGCGGGGATGAGCCCTGCGTGGCGGTAAGATACACCTGCTTCGGTTGATCTGCCCCGCACCTGCGGGGATGAGCCCAATCACCCCAATCAACCCCACCGCGAACATACATCTGCCCCGCACCTGCGGGGATGAGCCCAAGTTCTCAAGGCGTTGGAGAGGAAGGATGTCATCTGCCCCGCACCTGCGGGGATGAGCCGCGACGGAGACGGCGACGCGATAAAGCCAGGCGATCTGCCCCGCACCTGCGGGGATGAGCCCCTTACATACATCCTCACGCCCCGCATGGGAGCATCTGCCCCGCACCTGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCCAGCATTTGGAGCCAGCCGAAGGCGTAATCACCATCTGCCCCGCACCTGCGGGGATGAGCCCCACCGCGATTTGCAGCGTGGGGGATATTTGGGATCTGCCCCGCACCTGCGGGGATGAGCCGTAGCTGCCCAAGTTGCTGCATCGCCTGGGTGGATCTGCCCCGCACCTGCGGGGATGAGCCCGTATAAGGGGGTTTTAGAACGGGGGCTGCGCAATCTGCCCCGCACCTGCGGGGATGAGCCGCAATGGGCCTATAGCGAACTCGAAATTTATAAATCTGCCCCGCACCTGCGGGGATGAGCCTGGGCACAACAAAACGCGTTCAACAACAGAAAAATCTGCCCCGCACCTGCGGGGATGAGCCCCGTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : ATCTGCCCCGCACCTGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 19 82173-80558 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 82172 28 100.0 33 ............................ GCCCGGATCTGAAGGTGGTAGCTCCGCTGGCAC 82111 28 100.0 34 ............................ AGTGTCGTGCTCATTTTGGGTTTCCTTTCAGATG 82049 28 100.0 33 ............................ TGGCGATGAGTAGCGCGGTTTCGCGCTCGTTGC 81988 28 100.0 33 ............................ GTCGGTATTCTACAGCCATTTGTTTCTCTTGTG 81927 28 100.0 33 ............................ GTCAGCGTCCTCGACCATGCGGTATCCGCAGTA 81866 28 100.0 33 ............................ CCGGCACCAGCACCGGGGCAATCAAATCCCACA 81805 28 100.0 33 ............................ CCACCGACCCCAAGACGATCATCGACGCGGCGG 81744 28 100.0 33 ............................ TTTAGCGGGGACGGTGTAGTCCTCGAGGGAATC 81683 28 100.0 33 ............................ CATTCAGGACATCGAGACCACCACCGACATCGC 81622 28 100.0 33 ............................ GCCCGAATCGAATATGCGGGTCTCGCAAGAGAC 81561 28 100.0 33 ............................ CCACCCCCATATTGGTGTAAATGATTTACTTAC 81500 28 100.0 33 ............................ TACGGTGATCCCACCGGGGAATATAGGTACGCG 81439 28 100.0 33 ............................ CGGCCTTCTGAAGGCGTGGAATGGGATTGCGAA 81378 28 100.0 33 ............................ TGAGCTTCTGGTCTGGGGTGGTGGGGTAGCATT 81317 28 100.0 33 ............................ TACATCGTCTCCGAGGATGGTGCAGACCTTCCC 81256 28 100.0 33 ............................ TCTTCCGTTTCCACAGGTCGGCGTAGTATTTGA 81195 28 100.0 33 ............................ GTTGCCATTAGATTCCTCCTTGAATTTCTTGTT 81134 28 100.0 33 ............................ GCTAGTCAGCGGGTCACCCGCTTCAGCAGCTGC 81073 28 100.0 33 ............................ TTCTCCGACGGCAACTACGACGAAGCGGTCAAA 81012 28 100.0 33 ............................ CTGGGAACGCCTCACCAAGGAGACCAATAAGTG 80951 28 100.0 33 ............................ TTCTCCGACGGCAACTACGACGAAGCGGTCAAA 80890 28 100.0 33 ............................ CTGCGTGGCGGTAAGATACACCTGCTTCGGTTG 80829 28 100.0 33 ............................ CAATCACCCCAATCAACCCCACCGCGAACATAC 80768 28 100.0 33 ............................ CAAGTTCTCAAGGCGTTGGAGAGGAAGGATGTC 80707 28 100.0 33 ............................ GCGACGGAGACGGCGACGCGATAAAGCCAGGCG 80646 28 100.0 33 ............................ CCTTACATACATCCTCACGCCCCGCATGGGAGC 80585 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 27 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : NNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGCAATTGGCGGATGCTGAGGCTGCTTTGGAGAAATCTGCCCCGCACCTGCGGGGATGAGCCCTGAATTCCTAGAAACACCCGCAGCACGAGCAGATCTGCCCCGCACCTGCGGGGATGAGCCGAAGGCGCGTGTGCGCCGGTTGGAGAAGCGTAGATCTGCCCCGCACCTGCGGGGATGAGCCGGAGTTGCCATGGAATCGGGAAGCTTGATTTTGATCTGCCCCGCACCTGCGGGGATGAGCCCATTTCAAATTCGCGGTTCTTTCCGCGCAGCTTATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACCTGCGGGGATGAGCCCGGCGTCGTTCAGTGTGACCTGGTGCCCCTTGAC # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTGCCCCGCACCTGCGGGGATGAGCCGCCATCATCACAGGAGCACTATTCGCAGCCATCATCTGCCCCGCACCTGCGGGGATGAGCCGGAACCGGCATCGACGGCTTCGTCTAGTCGTGGATCTGCCCCGCACCTGCGGGGATGAGCCCATCGCCGAGGGGTGGAGAATCCGCGATTATTTATCTGCCCCGCACCTCCGGGGATGAGCCCGGCCTGGGTTCTGAAGGTGCTCAGAAGGTCTTATCTGCCCCGCACCTGCGGGGATGAGCCGAGACGCCACGAACAGCTACGTGCCCTCGGATTATCTGCCCCGCACCTGCGGGGATGAGCCGGTCGCTGATGCTGCTATCGAAGCCGGATACCCATCTGCCCCGCACCTGCGGGGATGAGCCCGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 20 82604-82332 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82603 28 100.0 33 ............................ CTGAATTCCTAGAAACACCCGCAGCACGAGCAG 82542 28 100.0 33 ............................ GAAGGCGCGTGTGCGCCGGTTGGAGAAGCGTAG 82481 28 100.0 33 ............................ GGAGTTGCCATGGAATCGGGAAGCTTGATTTTG 82420 28 100.0 33 ............................ CATTTCAAATTCGCGGTTCTTTCCGCGCAGCTT 82359 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CCCATTATCATCTGCCCCGCACCTGCGGGGATGAGCCGTCGCGACGGGACTGCCAGGTCTTATTTTTCAGATCTGCCCCGCACCTGCGGGGATGAGCCGGTGGAGCTTCCCCGCCCGCCCATGTTGAGTTTATCTGCCCCGCACCTGCGGGGATGAGCCTGGCCACGGGGCCGTCGAACCTGCTGCAGGAAAATCTGCCCCGCACCTGCGGGGATGAGCCGGAATACATTCTTTCGGAATCAGAACGGAACTCATCTGCCCCGCACCTGCGGGGATGAGCCCCGCATGGTGGATGATGTGAACCCGCGTGTCACATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGCAATTGGCGGATGCTGAGGCTGCTTTGGAGAA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCGCACCTGCGGGGATGAGCCCGGCGTCGTTCAGTGTGACCTGGTGCCCCTTGACATCTGCCCCGCACCTGCGGGGATGAGCCGCCCGGATCTGAAGGTGGTAGCTCCGCTGGCACATCTGCCCCGCACCTGCGGGGATGAGCCAGTGTCGTGCTCATTTTGGGTTTCCTTTCAGATGATCTGCCCCGCACCTGCGGGGATGAGCCTGGCGATGAGTAGCGCGGTTTCGCGCTCGTTGCATCTGCCCCGCACCTGCGGGGATGAGCCGTCGGTATTCTACAGCCATTTGTTTCTCTTGTGATCTGCCCCGCACCTGCGGGGATGAGCCGTCAGCGTCCTCGACCATGCGGTATCCGCAGTAATCTGCCCCGCACCTGCGGGGATGAGCCCCGGCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 21 83156-82823 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83155 28 100.0 33 ............................ CGGTATAGTCCATGAATCGCGTGGCCCATTATC 83094 28 100.0 33 ............................ GTCGCGACGGGACTGCCAGGTCTTATTTTTCAG 83033 28 100.0 33 ............................ GGTGGAGCTTCCCCGCCCGCCCATGTTGAGTTT 82972 28 100.0 33 ............................ TGGCCACGGGGCCGTCGAACCTGCTGCAGGAAA 82911 28 100.0 33 ............................ GGAATACATTCTTTCGGAATCAGAACGGAACTC 82850 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CACACATCTGCCCCGCACCTGCGGGGATGAGCCTATCTCACCTGAACTGGGAAAACCGGAAAATGTATCTGCCCCGCACCTGCGGGGATGAGCCCATAATGGCAGGTCAAGGCATCTTTTCTAGACAATCTGCCCCGCACCTGCGGGGATGAGCCCCGTGTGGATTCATGTCACCTGCTTCGGGAAGCATCTGCCCCGCACCTGCGGGGATGAGCCCCCGTCATCGACTTTGAACCAGACCATATTTTTATCTGCCCCGCACCTGCGGGGATGAGCCGATTACGACCTGCGAACGTTGACCCATGATTGAATCTGCCCCGCACCTGCGGGGATGAGCCCCACACGACTACCAGGCCTACGCCACTGAATTCATCTGCCCCGCACCTGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CCGCATGGTGGATGATGTGAACCCGCGTGTCACATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGCAATTGGCGGATGCTGAGGCTGCTTTGGAGAAATCTGCCCCGCACCTGCGGGGATGAGCCCTGAATTCCTAGAAACACCCGCAGCACGAGCAGATCTGCCCCGCACCTGCGGGGATGAGCCGAAGGCGCGTGTGCGCCGGTTGGAGAAGCGTAGATCTGCCCCGCACCTGCGGGGATGAGCCGGAGTTGCCATGGAATCGGGAAGCTTGATTTTGATCTGCCCCGCACCTGCGGGGATGAGCCCATTTCAAATTCGCGGTTCTTTCCGCGCAGCTTATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 22 83895-83257 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83894 28 100.0 33 ............................ CCCGGCTCGCGTGGGCGACTGGGGCGCTGGGCT 83833 28 100.0 33 ............................ CAGACATGAGCGTTACTAACTCCTACTTTGATG 83772 28 100.0 33 ............................ GCAGGCCGAAAACATCACCAACAGCCTCGCTAA 83711 28 100.0 33 ............................ CGGCAAAACATTTGAGGTGATCCAGGCCCACAC 83650 28 100.0 33 ............................ TATCTCACCTGAACTGGGAAAACCGGAAAATGT 83589 28 100.0 33 ............................ CATAATGGCAGGTCAAGGCATCTTTTCTAGACA 83528 28 100.0 33 ............................ CCGTGTGGATTCATGTCACCTGCTTCGGGAAGC 83467 28 100.0 33 ............................ CCCGTCATCGACTTTGAACCAGACCATATTTTT 83406 28 100.0 33 ............................ GATTACGACCTGCGAACGTTGACCCATGATTGA 83345 28 100.0 33 ............................ CCACACGACTACCAGGCCTACGCCACTGAATTC 83284 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : ATAGGAAATCTGCCCCGCACCTGCGGGGATGAGCCCTTGGGGCCTAGGGGTGCGCTGAGGAGGAAAACATCTGCCCCGCACCTGCGGGGATGAGCCTGAGCACGCTTAATGATGTTGTGGCGAAGATCGATCTGCCCCGCACCTGCGGGGATGAGCCGGCGAGAGCACCCGACCATCGGCCAGGTGCTCCATCTGCCCCGCACCTGCGGGGATGAGCCTCCCGCGTTGATGAATTTCTGGGGTGAGGATAAATCTGCCCCGCACCTGCGGGGATGAGCCGAGCGGTGATGAGAAGGGGCACACCACCCGCGAATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACCTGCGGGGATGAGCCGCAGGCGAATGTAGTGAACACTCTGAGCATGTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGCCCCGCACCTGCGGGGATGAGCCCGGTATAGTCCATGAATCGCGTGGCCCATTATCATCTGCCCCGCACCTGCGGGGATGAGCCGTCGCGACGGGACTGCCAGGTCTTATTTTTCAGATCTGCCCCGCACCTGCGGGGATGAGCCGGTGGAGCTTCCCCGCCCGCCCATGTTGAGTTTATCTGCCCCGCACCTGCGGGGATGAGCCTGGCCACGGGGCCGTCGAACCTGCTGCAGGAAAATCTGCCCCGCACCTGCGGGGATGAGCCGGAATACATTCTTTCGGAATCAGAACGGAACTCATCTGCCCCGCACCTGCGGGGATGAGCCCCGCATGGTGGATGATGTGAACCCGCGTGTCACATCTGCCCCGCACCTGCGGGGATGAGNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : ATCTGCCCCGCACCTGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 23 84572-84055 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 84571 28 100.0 34 ............................ CCCTTCGTTCACGAATTTCGGCATCCGGTATTTC 84509 28 100.0 33 ............................ GGCCATCATCCGACGTGGCGGGCGTGGTGTTGT 84448 28 100.0 33 ............................ CAACGATGACGAACTGTGCGTTAGACATAGGAA 84387 28 100.0 33 ............................ CTTGGGGCCTAGGGGTGCGCTGAGGAGGAAAAC 84326 28 100.0 33 ............................ TGAGCACGCTTAATGATGTTGTGGCGAAGATCG 84265 28 100.0 33 ............................ GGCGAGAGCACCCGACCATCGGCCAGGTGCTCC 84204 28 100.0 33 ............................ TCCCGCGTTGATGAATTTCTGGGGTGAGGATAA 84143 28 100.0 33 ............................ GAGCGGTGATGAGAAGGGGCACACCACCCGCGA 84082 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 100.0 33 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : TCATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCCTTCATCGACGCGATCATCGCATACAACGACAATCTGCCCCGCACCTGCGGGGATGAGCCGCGTTAGACTCCAGTCGTTGGTGAAGCGATGCTATCTGCCCCGCACCTGCGGGGATGAGCCCCCTTGGTTACATTAAGCTCTTAGGTGTAAGGAAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGTCCCCCAGGTGATCTGGATAAACTTACGGAAC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCCCCGCACCTGCGGGGATGAGCCGCAGGCGAATGTAGTGAACACTCTGAGCATGTCATCTGCCCCGCACCTGCGGGGATGAGCCCCCGGCTCGCGTGGGCGACTGGGGCGCTGGGCTATCTGCCCCGCACCTGCGGGGATGAGCCCAGACATGAGCGTTACTAACTCCTACTTTGATGATCTGCCCCGCACCTGCGGGGATGAGCCGCAGGCCGAAAACATCACCAACAGCCTCGCTAAATCTGCCCCGCACCTGCGGGGATGAGCCCGGCAAAACATTTGAGGTGATCCAGGCCCACACATCTGCCCCGCACCTGCGGGGATGAGCCTATCTCACCTGAACTGGGAAAACCGGAAAATGTATCTGCCCCGCACCTGCGGGGATGAGCCCATAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 24 84942-84729 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84941 29 96.6 32 N............................ CTTCATCGACGCGATCATCGCATACAACGACA 84880 29 96.6 32 ............................G CGTTAGACTCCAGTCGTTGGTGAAGCGATGCT 84819 29 100.0 33 ............................. CCTTGGTTACATTAAGCTCTTAGGTGTAAGGAA 84757 29 89.7 0 ..........................NNN | ========== ====== ====== ====== ============================= ================================= ================== 4 29 95.7 33 ATCTGCCCCGCACCTGCGGGGATGAGCCC # Left flank : GCCATGGCCAATGCCGTCAACCCCTACGGCGATGGCGACGCCGTCCCCCGCGTCCTCGCCGCCATGGCGCAGCTCGCCGGCGTGGGAGAGAGGTTGGAGGATTTTCGGCCGTAGGGGTGGGCCACCGGGTGGGGCGGTGCCCCAGCTCCGACCCCTCCCACGCTCAAGCCGACTCCGGCCTCCTCTTGCCCCCGATTTCAAGTTAAAGGTAAAATAGCCCCAGGCTCCATATCCTGCCTGTTCAGGAAGCATCTGCCCCGCACCTGCGGGGATGAGCCGTGCTATACCGCCCCAACTACACCATCTATACGATCTGCCCCGCACCTGCGGGGATGAGCCCCGCCCTGCAGGCGGGTCTCCAATGCGGCCTTCATCTGCCCCGCACCTGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGTCCCCCAGGTGATCTGGATAAACTTACGGAACATCTGCCCCGCACCTGCGGGGATGAGCCCCCTTCGTTCACGAATTTCGGCATCCGGTATTTCATCTGCCCCGCACCTGCGGGGATGAGCCGGCCATCATCCGACGTGGCGGGCGTGGTGTTGTATCTGCCCCGCACCTGCGGGGATGAGCCCAACGATGACGAACTGTGCGTTAGACATAGGAAATCTGCCCCGCACCTGCGGGGATGAGCCCTTGGGGCCTAGGGGTGCGCTGAGGAGGAAAACATCTGCCCCGCACCTGCGGGGATGAGCCTGAGCACGCTTAATGATGTTGTGGCGAAGATCGATCTGCCCCGCACCTGCGGGGATGAGCCGGCGAGAGC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 25 85192-85042 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821085.1 Corynebacterium sp. HMSC073D01 Scaffold513, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 85191 28 100.0 33 ............................ GTGCTATACCGCCCCAACTACACCATCTATACG 85130 28 100.0 33 ............................ CCGCCCTGCAGGCGGGTCTCCAATGCGGCCTTC 85069 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATCTGCCCCGCACCTGCGGGGATGAGCC # Left flank : CGTCCTCGTCACCACACCACTGCCCTACAACGAGTTCTGCGCCCTCATGAACCGCGCCAAACTCGTCGTCACCGACTCCGGCGGCGTGCAGGAGGAGGCCCCAGCACTGGGCAAACCAGTCCTCGTCATGCGCGACACGACCGAGCGCCCCGAGGCCGTCAGCTACGGCACCGTCAAGCTCGTCGGCACCAACGAAGACGACATCGTCAACGAGGCGACGACGCTGCTCACCGATGACACCGCCTACGCCGCCATGGCCAATGCCGTCAACCCCTACGGCGATGGCGACGCCGTCCCCCGCGTCCTCGCCGCCATGGCGCAGCTCGCCGGCGTGGGAGAGAGGTTGGAGGATTTTCGGCCGTAGGGGTGGGCCACCGGGTGGGGCGGTGCCCCAGCTCCGACCCCTCCCACGCTCAAGCCGACTCCGGCCTCCTCTTGCCCCCGATTTCAAGTTAAAGGTAAAATAGCCCCAGGCTCCATATCCTGCCTGTTCAGGAAGC # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCCCTTCATCGACGCGATCATCGCATACAACGACAATCTGCCCCGCACCTGCGGGGATGAGCCGCGTTAGACTCCAGTCGTTGGTGAAGCGATGCTATCTGCCCCGCACCTGCGGGGATGAGCCCCCTTGGTTACATTAAGCTCTTAGGTGTAAGGAAATCTGCCCCGCACCTGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCCCCGCACCTGCGGGGATGAGCCGTCCCCCAGGTGATCTGGATAAACTTACGGAACATCTGCCCCGCACCTGCGGGGATGAGCCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTGCCCCGCACCTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //