Array 1 12165-13084 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGI01000010.1 Nocardia aurantia strain RB56 NRB56_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12165 29 86.2 32 G............C.............TT AGGTGCCGTCAAGGCCGGGCGATGGGAAGTTC 12226 29 89.7 32 G.............G.............G GGCAAACCCGCCTTCCATGTGATGCGCCGGAC 12287 27 89.7 32 .....--.....................T CGGCCGAGCTGGGGTGAACGGGAACGGCCCCG 12346 29 100.0 32 ............................. CCGGTCCGGCGGCCGCAGCGGATGAGACCTCC 12407 27 86.2 32 ........--T.................G TGCCGGCCACACCCGCATTGCCGCCGCCGCCC 12466 29 100.0 32 ............................. TGGGTACCGACACCGGCTGCATCGCATTCGTC 12527 29 96.6 32 ............................G TCCTGCCCGGCCGAGGACGTGGCATGACCGCC 12588 28 86.2 33 ...-C...........G...........T GTCTGCACGCCGCGCTCGTTGTGGTCGCCGGTC 12649 29 93.1 32 .........C..................C CGAGCAGCATAGCGACCGGTCGGGGCGTCCGG 12710 29 96.6 32 ............................T TCCCGCCAGTACCGCGCCGCCCGTGACGGGGT 12771 29 100.0 32 ............................. CATTCTCGAACCGATGCAGGACCCGGCCGTGT 12832 27 89.7 30 ........--..................C TGCGGGACGGCTTCGCCGGTCTGGGCCTGG 12889 29 79.3 32 G......T..T...T.....A.......T GTTGCGCAACGCAACCGCTTCCGCCGGCAATT 12950 29 75.9 74 G.......T..C.C........A..A.G. ATGGCCATTGACAGATGGTCTGAGGTTGCCACCATCGTGCCGATCCGGTTCGACCTTGGTCACGCTGCGCGCCG C [12960] 13054 29 75.9 0 G......T......AAG.....C..C... | C,C [13063,13066] ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 89.7 35 ATCGGCCCCGCGCGCGCGGGGATGGTCCA # Left flank : CGACTACGCCGACCTCGTCCAGCCCGGTTTCGGCGAAGACCAGATCACCGTGATCGGCCCCGATCTCGACGCTCCGGTCGACTGGTGACCCCATGACTGTCATCGTCCTGATAGCCGTCGCGCCAGGCCTACGTGGACATCTCACCCGCTGGATGGTCGAAATCAGCGCCGGAGTCTTCGTTGGCAAACCCAGCCGTCGCATCCGAGAACGACTTTGGGAACTACTCGCCGACCGAGTCGGCGACGGCCAAGCCGTCATGATCGAACCCGCCAACAACGAACAAGGCTGGACAGCACGCACCGCCGGCCGCGACCGCTGGCGTCCCGTCGATTTCGACGGTCTGGTCCTCTCCGCCCGCCGCAGAGCGACCTGACAGGCCATGAGGAACCTCGACCCGGATCTTCCCGGAACGAGGAACTCACTGACCCGAACCCACGAAGGCGAAATCGAACTGAATGAAAACAGGGGTATCGGCTCGTAAATATGCAGGTCGAAAAGT # Right flank : ATACGCGAGCTATGCGAAGTGACGGGCAACTGCGCTTGCTCTGCTGCCCTCAGGATGATCTGTCGAAAGTGATGGCGGCAACGCGCATCTGAGAAGTATGGTTTTAGCTAGAAATTTACTGTGATATGTTGATTTATAGCACGATGAAGTCATTTTCGGAGGCCCCTGCTACGAATGCCGACCATTCCTTACTGGTGTAGGTGAGGGTTGTGCCGTGATCGTCGACCAGGGTGACGCCGCCATCTTCGTGACAGTTCATACGGACCTGCGGCGGCATCGATCCATCGCCGATTGCCGCAGCAATGAATTCATTCCATCGGCTGGCCGGGAGCATTATAAGCGGTTGTTCTGTGAGCTGATCGAACTGCTTGCGTGCAAATTTGCTGTCCCTGATCCCGACCAGATCGCCGGCGAACGCGAACTCGACACATGCGCTGTTGTTCTGGCTGTGGGCGCTCTTGCGCCAGCGCGCTGCGGCGAACTCGGTGGTGGTGCTCATG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCGCGCGCGGGGATGGTCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16850-18391 **** Predicted by CRISPRDetect 2.4 *** >NZ_WEGI01000010.1 Nocardia aurantia strain RB56 NRB56_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16850 29 96.6 32 ............................T CCAGTCCGGTACGCGGTGCGCAGACAGCGTGG 16911 29 100.0 32 ............................. GAACTTCGTCGAGGTGTTCTCGATCCCGTGCG 16972 29 100.0 32 ............................. TCCGGTAGCCGGCCGCCGCGTCGCCGGGACCA 17033 29 100.0 32 ............................. ATATTGCCGCTGTTCCCACCGAAAACGGTGTC 17094 29 100.0 32 ............................. CGCGGATCACGACCGGCGGCGCGAACACCCTG 17155 29 96.6 32 ............................C TGCACGCCGTCGATCACGCCGTGCAGAAGCCC 17216 29 100.0 32 ............................. TTGTGAAATGGGATGAATGGGGCATGTGGGGC 17277 29 93.1 32 ...............A............T TCGATGACGGCGCCGATGCGCGCAGAGATCGA 17338 29 96.6 32 ............................C CAGGCCAATACGGCCATCGCGAACGCCGCGGC 17399 29 96.6 32 ............................C ACGGTGGCGATGTGGTGCTTCCGGCACCCGAT 17460 29 100.0 32 ............................. TTCACCGGTGTCACGCCCAGCTCGGCGGCGAG 17521 29 93.1 32 .................A..........T TCAACCGCGGCCAGGAATGGGTTCCGGTCCGG 17582 29 96.6 32 ............................T CCCAGGTTGCCGTCGGCGTGATCTTCGCTCCA 17643 29 100.0 33 ............................. CGCTCCGCCGACGCCACCGAGATCTTCGACCAC 17705 29 93.1 32 ..........T.................A CGCATCGGCGGTCGCGGCCTGCCGCTGCTGGC 17766 29 96.6 32 ............................C TGCCGCGAGTACGGGCTGACGTTCACTCTCGG 17827 28 93.1 32 ........-...................C ATGCCGGCGCACTTCGGCCGGGTCAGGCGGTG 17887 29 96.6 32 ........................A.... GGGCCTGACGTGGAGATCATGGGCGTCGCGGC 17948 29 96.6 32 ............T................ TTGGCGATGTGAGCGCTAGACCAACAGGTCCC 18009 27 89.7 32 ............--.....A......... GGGGTGAAGTAATGGAGATCCACGGTCCGGGC 18068 28 82.8 32 .....-...A...G...AA.......... CCTGATGGCCTGCGGCTGCAAATGGCACCGCG 18128 28 86.2 26 .........C...G..-.A.......... TGTAGCGGAGCGACTTCTCCGGTCAT 18182 28 72.4 32 ...-.A.......A....AAA..AA.... TCGATCGCGGCGGCGATCATGTCGGCCAGTGA 18242 29 93.1 32 .........CT.................. TGGCGGAGGCCGTGAAGACAGTAGCTCATGGT 18303 28 89.7 32 .....T...........-......A.... CCGCCGCGGACGAGCTCGCCGCGGGTATCGAC 18363 29 89.7 0 .........A....T.......C...... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 94.2 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Left flank : TGCTCGCGATCTATCGGTGTGGCACGAACGGGAACGGTTCGCCACCGGCCCACTCGGAACGAACGAAATGCTTGCGCAGCGTTCGCATCTGCGATTGCAAATCGACCGCTGGGTCGCACTCCGAATGCCCACCCCGTTCGAGCGGACCCGGATCCATACGGAGGGCATGGGCCGGGTGGTGGACCGGCTCGCGATGCGCACCATTCAGGTTCGCGCGCTACTGCCGTACCCAGCCAGCGGTGCGGTCCGGGATGCGATCTCGGCGTTGGTCGAACTCTCCGAGGCGTACCAGGATCTGGCGGACGAGGTCGCTGCCGGCTTGTGTCGCCTGCCAACTGGTTACGACCCTTGGTGATAACCGCACGCAGTTCGCCAACGTGGGATGCTCGTGACGTGCTGATCTTTGCCGTTAAGCTGCTGATGCGGATCGACGCCGTGTGAGGCAAATCGAACTGAATGAAAACAGTGTGTTCTGCCAACAAACCTGCAGGTCAAAAAGT # Right flank : GGAACGGGACTACATAGCCGGGCTGCGGGCTTGACGGACGTTACGACCGTTGCCGTGGTATGCGTCGTGCTACCGGTTGTGATTGTCGGGCTGCGCGAAATCGACGTTCAGCCGCGGACGACCTTTGTACGACAGTGATCTTGGACGAATTCTTCGTATGGCCGGTTGTTGCTGTGGGGCGATGCCGTGACGATGGATGCGATTGATCCGATAGTTTGGCTTGTTCTGATTCCGGTGCGCTTGCTGTAATTGATCGATTATGCTCACCCTTCTGGACGGGACGGCGATCTGGCTCCGATTCCTCGTTGATCGGGTCTGCTCGACTACTCGATAATTCAATGCTGCCGGCAGGCGTGGGGGATAATTGATCGAGTCCGGGGTGGCAGTCGACGCAGAGGTCGTCACGAAGTTGGCGCCATTCGCCGCATTCGGTGCATTCGGCATTGGGAACTGTTGGGGTGGTCGGTAATTGGCGCGGTGGTATGGGGGGATCGGGCTGG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-33] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //