Array 1 1163218-1163838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001477.1 Clostridium perfringens F262 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 1163218 26 100.0 39 .......................... AAATCTACTTGAATAACTTGATTTAGTATAATTGTTAAT 1163283 26 100.0 40 .......................... AAATCGAGATACTGTAGAGTTAGCTAATGCAACTTTAAAA 1163349 26 100.0 40 .......................... AAATCTACTTATAACTACAAGAACTTTCTAAGGTTATCTA 1163415 26 100.0 172 .......................... TTAAATAAGAACTTTAAATATTAAATTGTTGAAATAGGTATATTGCTATTACTTTTTCTAAGCTGATTAAAATACTTTTATTATTAACTAATATTTTATTAAACAATTAATGTTACAAAAATATATAAATTTATAAAATAATTATTTATTTTACAAAATTTGTTGGGTGGAA 1163613 26 76.9 172 ...A..AT.......A.......A.A TTTTTGTAAGATGAAAAGAAAAAATGCTTTAAAATATTAAAATGATTAAAAGATAAATTTTGTATAAATAGTTTTTATTGGTATAATTAAAACATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCATAGAGTATTTAAAGAATGTCTTTAATGCATAAAATA A,T [1163622,1163627] 1163813 26 73.1 0 T..T....A......T.G.....C.A | ========== ====== ====== ====== ========================== ============================================================================================================================================================================ ================== 6 26 91.7 93 ATTGAACCTTAACATGATATGTATTT # Left flank : TTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAACTAAAAAGCTACGGAACCCTAGAAAACCATATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGCTTACTGAATAGGTAAATCTTAGTATTTAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATGAAATCACCTTTCAGACCTTGCAATAACTAAATTATAAGTTGATTTTATATTAGTGCTTTAAATTAAAGTAAGACACTGGTAAAATAATAAGAGAGACACTGAAATAACTAGCTTAAAGATAAATATAAAAACAAAGAAATGGCTATTTTACAAGCATTGA # Right flank : AAACAAAAGATAAACTAAATTATTTGATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATACATTAGATTTATAGGAGGTGAGTATGGTGAAAGTTTTTCAACTAAATGTAAAGGTATATCTTTTAAATAATATAAAGCAGGAAGACGCTTTAACTGAAATTTGTAGTTTTATAGACACAACCTTAGCTAGAGATCAAGAGTTTTTAGAGCTACATAATAAAAATTGCTATAAGATGTATAGTTTTAATTCCTTTTATCCTGTAGAAGAAAATAGAATTTATAAAGAGGACAAGATATATACTTTTCAAATAAGAACTATAGATGTTAAGTTAGCAAATTACCTTTTAAATGAGCTTCACAAAAGTTACACAAGTTCAATAAAGGGGATAAAGGTTGAAGTCAAAGAAATAAATAGACATCATATTGAAAAAGTGTATTCAATAACTCCAATTCTTATTAAGAATGATTTCGGGTACTGGAAAAATCATATGAG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [76.7-90.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 1173539-1175662 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001477.1 Clostridium perfringens F262 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1173539 30 100.0 34 .............................. AAATTTCATCTCTTGTTTTACCCTCAAATAAAAT 1173603 30 100.0 35 .............................. ATTAATTCATGAATATTTTCAATTATATCAACCAT 1173668 30 100.0 35 .............................. TCCGTCATATTGTCCATTTTCTTTTCTACTACATC 1173733 30 100.0 35 .............................. TCATACAAAACCCTTAATTTTATAATCCCCTTATC 1173798 30 100.0 36 .............................. AATTTAATGATAGGATAGCTTCTGCTTACCTTATCT 1173864 30 100.0 35 .............................. TTATTACACCTACTTTCTACAGCATTTCATCCATC 1173929 30 100.0 37 .............................. TCTTATGAAGAAAAATATGGTGGAACTACTTATACTA 1173996 30 100.0 36 .............................. TTAATAATTGCTATTTCTCTTGTCCCCCAATTAGAA 1174062 30 100.0 36 .............................. AATACATGTTCGTAACCCATTTCTAGCGGACAGTTT 1174128 30 100.0 36 .............................. ATAAAGATGAATTTTATATGCTTAAATTTATAAATT 1174194 30 100.0 34 .............................. GTATCCAAGATTACAGCTTGAAAAAATTGAGTTA 1174258 30 100.0 36 .............................. TCTTATTTCCTTTAGTAGCTATCTCAAATCCTTCTT 1174324 30 100.0 35 .............................. GATCTTAGAAGAGATGTTGAGTTTTTAATTTCTTC 1174389 30 100.0 36 .............................. AAGGCTTGGCGTATAGTTAGGATATCCGTATTAAAT 1174455 30 100.0 37 .............................. TCCTTATTTCTAAGTTCTTCTAGTTTCTTGCAATATC 1174522 30 100.0 36 .............................. TGAATACTTAGACCAGGAAGATGATTTTGAAGATGA 1174588 30 100.0 35 .............................. GTAGGATTAAGGTTTGATATTGATTTGCCTAATAC 1174653 30 100.0 35 .............................. TAAATAACAGAACTGTTTTTACCACTTTGTCCAAA 1174718 30 100.0 35 .............................. AATATAGTGTTTACAATTCTTACGTAACTTTCAAC 1174783 30 100.0 35 .............................. GCACCATCTACTGGCTTAGAAATTGGAGGATTATC 1174848 30 100.0 35 .............................. TCGAATAAATCTGGGTTACTTTTTTGTATCGCAGA 1174913 30 100.0 35 .............................. CGTGAAACATATACATGTTAGAGCCTTTGGTTTCG 1174978 30 100.0 35 .............................. TTTTATATAATTTAAATCAATTACATTTATTATTT 1175043 30 100.0 36 .............................. GAATTAGTTTTTGTTAATACATACGACAATGAATAC 1175109 30 100.0 35 .............................. GCACCATCTACTGGCTTAGAAATTGGAGGATTATC 1175174 30 100.0 36 .............................. AATGTAAATTCTTTTTCAACACTCTTATTCAATCCA 1175240 30 100.0 36 .............................. TAGTCATTTATCTTAGGGCTATCAATGAAGCGAGGG 1175306 30 100.0 36 .............................. CAGATTAAAAGCAAATGAATTTGGATATGAAGAGTT 1175372 30 100.0 35 .............................. AAAATAACTATCATGGTTAAAGATATGAAAAAGGC 1175437 30 100.0 34 .............................. ATATAAAGAGAGTTTAAAAAAAGAATATGATAAT 1175501 30 100.0 36 .............................. AAGATAGTTGGGTAACTGTAACTGATACTGTAAATG 1175567 30 100.0 36 .............................. GACCATGCACCTATTATTCTTTCACCTATTCTAAAA 1175633 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTCAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACCCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAATTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGG # Right flank : TATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAGTCTAATATTTTTATAAGGGTTATGAATATTGGAATGGCTTTATTTTTAAGCTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTTAATATTATATTAAGATCATTTATAAGTATTTATGGAGTTCTATGTTTCATGTCTTTTTGGCCAGTTTCATATTTATTTGATGAAAAGGATAAAGTAAAAGGAAGTACATTTTACATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAGAATTATGATAGAGTTAAAAGCTATTAATATAATTAAAAGTAATATAATTTAAAAAATATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //