Array 1 485793-487650 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFM01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3142 3142_3_length_714898_cov_23.1735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 485793 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 485854 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 485915 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 485976 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 486037 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 486098 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 486159 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 486220 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 486281 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 486342 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 486403 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 486464 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 486525 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 486586 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 486647 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 486708 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 486769 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 486830 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 486891 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 486952 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 487013 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 487074 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 487135 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 487196 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 487257 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 487318 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 487379 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 487440 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 487501 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 487562 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 487623 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 504332-506071 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFM01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain 3142 3142_3_length_714898_cov_23.1735, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504332 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 504393 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 504454 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 504515 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 504576 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 504637 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 504698 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 504759 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 504820 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 504881 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 504942 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 505003 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 505064 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 505125 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 505186 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 505247 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 505308 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 505369 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 505431 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 505493 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 505554 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 505615 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 505676 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 505737 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 505798 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 505859 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 505920 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 505981 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 506042 29 100.0 0 ............................. | A [506069] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //