Array 1 177502-180126 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILE01000012.1 Dolichospermum planctonicum UHCC 0167 scaffold00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================= ================== 177502 35 97.1 39 ..................G................ CCTATCAAATAGTTCAATGCTCCCTAGTTCTGTTTCCAA 177576 35 100.0 41 ................................... CGATACCGGAATAATGCAACTGACCTTTTAGTAATTGAGAA 177652 35 100.0 36 ................................... CCCTTGCTTGCCCACCTCCCCGCTTTGACCAATTAA 177723 35 100.0 36 ................................... CTTGCAAGCAATTCCTAAAGTATCTCCAGTACGGGT 177794 35 100.0 39 ................................... CAACATTACCACAGCAGCCCCCACAAACACCAACTGGAC 177868 35 100.0 38 ................................... CTTATCTGCTATAAATCTACTGTCGTAGTGCAAATGCT 177941 35 100.0 44 ................................... CAGAAATAATTGCACCAAGAAAATGGACTGCTGAAGAAGACAGA 178020 35 100.0 37 ................................... CTACTTAATAACATCATGCTGCCATATCCCCCTCGTC 178092 35 100.0 43 ................................... CGTAATATAGTTACATACACAAAACCAGGAACAAAATCATGAA 178170 35 100.0 43 ................................... CTACTAATTGCTTTATCCTGGCTTTATCCTGGTTTGTCATGGC 178248 35 100.0 39 ................................... CGACACAATATCGTGCCAATATCAGTTTTCAGTAATACC 178322 35 100.0 46 ................................... CGGTCAAATACTACATACATTGATCAGAATACTTGGGAAGATTTAG 178403 35 100.0 48 ................................... GCGGCTTTTTTGTTAATAGCATCTTACACATTTTGGACTGATTATCAA 178486 35 100.0 40 ................................... GAGAATTAGAGCGTCATCGGCTTTTATCTCAAAGGATATA 178561 35 100.0 37 ................................... GTGAAAAAACACTTGCCAAATAGAATCGGTGCTTAAT 178633 35 100.0 39 ................................... GATCTTTAATGTCAGTTCCCTTGTGCATTCCAAAATTCA 178707 35 100.0 41 ................................... GTCACCAAATCAGTATGTCTATCGAGAGTATATTTTTGTAC 178783 35 100.0 44 ................................... GACCACTATATTGTGGGTGATAATTTTTGCATATCACGGCAATG 178862 35 100.0 43 ................................... GATGAGTTTTACTAATCCATGGCTCACCATCACTGGGGGTTTT 178940 35 100.0 39 ................................... GTACAAAAGGAACACCATGTCCGCGTCTTGTTCCAAAGA 179014 35 100.0 47 ................................... GGACAAATTTGGTATTGCGCTTGGAGTAGTTCCACTACCACTACCAG 179096 35 100.0 47 ................................... GTAGTTGTCGGTAGACTAGATGTACCTCCTTTAAACCAAAGCTGCAG 179178 35 100.0 42 ................................... CGTCAGGAGTCATTGCTTGAGTCATTGTTTTTCCTTGATTAG 179255 35 100.0 41 ................................... CTCTAGCCGCATACCTACATCTTTTAAGGCTTTTTTATATG 179331 35 100.0 42 ................................... CCACTAGCAGTGTAAGTCTTGCCAGAACCCTGATTACCTATT 179408 35 100.0 38 ................................... CGTTTTATACACCAACTTATCACTCATCAAGGCCATTG 179481 35 100.0 49 ................................... CTTGAAGCGGTTTCTACCGTCATTGTTCAAGCTTCTGTTTCTGCTAAAA 179565 35 100.0 35 ................................... CAACTAAGCTAATTTAATCTGATTTAACGAGTAGG 179635 35 100.0 40 ................................... CTTACAGTCTCCCCAAAATATAGACTGGCAGCCTTTGATA 179710 35 100.0 40 ................................... CTTAACCAGCTTAACCCTTCTGTAATATCTCTGTAAGTTT 179785 35 100.0 40 ................................... CAAAATTAGGGGTTTATACATTTAAAATGGGTTAACAGCT 179860 35 100.0 48 ................................... CTTATTGCCCTCAATTCCAGAAATAATATATATGCAATAAGCCAAAAC 179943 35 100.0 39 ................................... CATTAAAACCTCTACAATTTGATCCACATGACTAATCGA 180017 35 100.0 40 ................................... CGTCATGATATTAAATGCTTATCCTATAAAATTGTTCATC 180092 35 91.4 0 T.T...............T................ | ========== ====== ====== ====== =================================== ================================================= ================== 35 35 99.7 41 GTCCCCACTCGCTGGGGACATTAATTGAATGGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCAGGTAAAATGGCTGTAATGTTTATTTTTTCGTTGGGAACTTCGGTCGCTTGCTGGGTAAGGGTTTTAGGGGTTTTTTCCCGCTCTCGGTTGGTGGTTTTACCACTTTTTTTCCTGATCTTTGGAAACTGTCTCTGGACACCTTGCTGGGTAAGGGTTTAAAATTGAGGG # Right flank : ACAACGCGATCGCTCATCAATAGTATATATAAATACATAATAAAATATGTACTGATATCAATGTTTGGTAAAGGAAACGCTGTAACTTGATAGCAGCATAAATAAAAACCAATGTCAAAGAAAATAAAATATTTTTAATAAAATCCTCAAAGTCAGGAAAAGCTTACAGAGTAAGAGTTAGAGCAAATATTACAAAAATGTTGAGATATTTTAAATTTCTAGACAAACACTGAATCGCGCTCTTATAATTCATCTATAAGCTAGACAGGGTATCTACCGATGACAGCAGAATATTGGCGGGCTAAGATTTGGGGGTTATTACATGACCCTGTATTAAAAGCGTTACATGACAATACAGGACGGGGTAAAAATAGCTTCTATAAACAACTAGAAGTAATGAAAGCTTGGGTTGAAATTGGCAAAACCCCCGATGATTCTCGTGGTAAAGCATTAGCAAATATCCTCTTAGCAGATCATGTAGCTTCAGCAAGTGATAGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGACATTAATTGAATGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 75538-79616 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILE01000003.1 Dolichospermum planctonicum UHCC 0167 scaffold00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 75538 37 94.6 34 ...................................TT AGAGGGCGAGAACATCTCTGGATATGAAGATTGC TC [75568] 75611 37 100.0 37 ..................................... TAATTATGCCCTTAGGATTTGATGATCAATTTGTAGC 75685 37 100.0 35 ..................................... TACTTGTTTTTGTCAATAGGTTTAAAAAAAATATT 75757 37 100.0 37 ..................................... ATCACGACTACCGGGAGAGGCTGGATCAAGTTTGGCC 75831 37 100.0 43 ..................................... GATAGATAGAGACAATAATGGCTATTATTCAAACCTTCAACTA 75911 37 100.0 37 ..................................... ATGATTCGCGCTTTTTTTGTAGATTTAATAAATTATA 75985 37 100.0 35 ..................................... TGGTAATTGTAATTCATATTCGTTTTTCTGTGGTG 76057 37 100.0 42 ..................................... TTTTTGATATTCCTTTAAATCCTATTCTATACTTATCTAATA 76136 37 100.0 34 ..................................... TTTTAAGGTTATTAACCGCGACATTAGGATAAGT 76207 37 100.0 35 ..................................... ATAATCTATGCTCAAATTCATTGCTAACACTCCTA 76279 37 100.0 34 ..................................... AAAAAAATCTTTATTGAGAATTAATCGCAATAAA 76350 37 100.0 38 ..................................... TTTTTAAATTCAATTACCCCGTACCTACTGATAATCGC 76425 37 100.0 34 ..................................... AATGTTTTTTAAGTGCCGCAACATGATATAATTC 76496 37 100.0 38 ..................................... AAAATTGACATTTTTCACTTCCTTATTTTTGATTTGTT 76571 37 100.0 34 ..................................... GAAATATCGTGAAAAAAGACGCTAAAAAGTGGAA 76642 37 100.0 34 ..................................... TTACGACTCCTGTTTTTGTTGATATAGATTCATT 76713 37 100.0 34 ..................................... ATCAATTGTGGAATAGATAGAAAAAATCAAGGTT 76784 37 100.0 38 ..................................... AAATCCGAATCAGATACATTAAACATGATTAATGATGT 76859 37 100.0 37 ..................................... AACTTGTATTTGTCAATAGGTTTAAAAAAATATTTTA 76933 37 100.0 35 ..................................... GATACAGAATTTACGCAAAAATCATCTATGAAAGT 77005 37 100.0 35 ..................................... CCAGATAGCTGCTTTTGAGCAGCAAGTAAAGCAAA 77077 37 100.0 38 ..................................... CTCGTACTATTCCCAATCCAGAAATAGCCACGATTGAT 77152 37 100.0 35 ..................................... CAGACATCAAGTCATTCTACTAATCGAATGGGAGA 77224 37 100.0 33 ..................................... AACCCTTTTCCAAAACTTTTTTTTCACTTTCCA 77294 37 100.0 37 ..................................... CATCCACAAGTCCATACCTTATCATTACCCTAGGCAG 77368 37 100.0 34 ..................................... TTCTTTGTTCATTGTTCATTGGTTTATGCCTTTA 77439 37 100.0 32 ..................................... CCCCTGTCCATCTACCAACCCATAGCGTACGA 77508 37 100.0 37 ..................................... TCAATATAATCTAATTCTTCTGTAATGTCCATCGGTT 77582 37 100.0 42 ..................................... AACCAACTGGTTGTTGAGGGTTTTTCCTCTGGCGGTAATGTG 77661 37 100.0 44 ..................................... ATCTGGACAATCTCAAGACGCACCCGGTACACCGCGCATTGCAA 77742 37 100.0 39 ..................................... CCTGAGAAGTGCGGCTTCTGGTATCGTCATTGATCAGAA 77818 37 100.0 38 ..................................... TATCAACTAGCAATGGAAATTCCAATATTGGTTCAGAT 77893 37 100.0 39 ..................................... GGTTATCAATTTATTTGAACAGTTGCTTAGAAACTCTAG 77969 37 100.0 35 ..................................... CGTCTGCTTTATCATAGAGGAAAAACTCATAGCCA 78041 37 100.0 34 ..................................... AATATGATGTTATTTGATTGTTAACATCATGCGT 78112 37 100.0 39 ..................................... TAGTAGTAAGTTTTTTATGGAAATCATCTGAAAAAATAT 78188 37 100.0 38 ..................................... TATGAAAAATGAACAGCAATACAACAAAAAGATTGCTA 78263 37 100.0 37 ..................................... ATAAGCCAGTCCAAAGAATTAGAATTGATGCAATCAG 78337 37 100.0 41 ..................................... TCGCAATTCCTTATCGCGTCCGGGCTGGGAAGCCTAGCAGG 78415 37 100.0 34 ..................................... TTATGACAAACGAAAAGATCACAAAGCGTGGCTA 78486 37 100.0 35 ..................................... AGTATCTGGCAATGCCAAAAAGATGACAGAGATGA 78558 37 100.0 38 ..................................... TTGGAAATTATCGTTGATTCTGAGTCACCAATGACATA 78633 37 100.0 35 ..................................... TTAGTGCCTCAACAGCATTTGCATTGGGCATATTA 78705 37 100.0 39 ..................................... TGTTCATATTTCTATAATAGGGAATAAAGAAAATAATGT 78781 37 100.0 36 ..................................... GATTTTTCTGATTTCTAACTTTTGAAAAACAAAAAA 78854 37 100.0 35 ..................................... CTGAATTGTCTACAATCACCCAAAATGAACTATTA 78926 37 100.0 33 ..................................... TTCCGGGGTGCGATCGCGGATCTGATCATTAAT 78996 37 100.0 37 ..................................... GGGACTATAAAACCCTATAATATCAACTTTCATAGAT 79070 37 100.0 35 ..................................... ATTAATAGTATTTATTTCTTTGTTGTTCTGCATTT 79142 37 100.0 37 ..................................... TTCTAAAAATATTCTCTAAATAGGTTGACATATTCTA 79216 37 100.0 33 ..................................... TCCACTTTGTTCACCACACCCTCTAACCATTGG 79286 37 100.0 37 ..................................... AAGTTTGACATTATGCCTACTGCGATCGCAGAGAAAA 79360 37 100.0 35 ..................................... TATCTTGAGTAAATGTTAGGGTTGACTTTTATCCC 79432 37 94.6 36 ..........G.G........................ TTATTGATGTAGGAGACTCCACATTTTAATCTTGTA 79505 37 91.9 38 ..........C.T.......T................ AACGAACGTAGGGGTTAACGGCCGTTAACCCCTACATG 79580 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 56 37 99.7 36 ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Left flank : TGTTATTTCTTACGATATTTCTGAGGATAAACGACGTACTAAAATCCATAGTATTCTCAAGTCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTTAATAAACTCATTAAACCTGAAACCGACAGCATTCGCTTTTACTTCCTTTGTGCTTGCTGTTTTGGTAAAATAGAGAGAATTGGTGGTGAACAACCCCGTGATCAGACAATTTTCTTCGCTTAATAATGCGCGGATGGGTGGGTGTAAAAAATTCAGATGAGAAAAAAATGCCTACAATCATTTCTACACAAGCTTTTCATCGAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACCCCTTGACACTTTTTTTGAAATGGATTATCATAAGAACATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCATTCCGCTATTGC # Right flank : CATTATTAAACTGTAACCTGTAACCTGTTCCCTGTCACCTGTAACCTGTTCCCTGTCACCTAATTGCAATTTCACCTACTCCCTAAGATATTGGATTTTGTTCCTCCACCCAAATTACATAATTTATTTCGTGGGTAATTTTGGATGTTCTTGGGAGTATTTACTGACTAGGTTAGATACTTCCGGGTTATACAGTCGCAGGTAATTCCAGTAATTACCGAATACTTGACGGACATAATTTTTGGTTTCATCAAAGGGAATTTCTTCTACAAATTCATCAGGATCTTTTTTGGGTATGGTTTGCAACCATTTAGCTACGTTACCCGGACCTGCATTATAACTAGCGATCGCTAACATGGAATTATTGCTATACTGTCGATGAGTATAATCTAAGTACCAAGTCCCCAACATAATATTATCATTGGCATTTTCCAAATTGATTTTTTTGATATCTGCATTCATTTGTGGGGCTATCCACGCTGCTGTACTGGGCATAACTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTAACTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 170281-168854 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILE01000006.1 Dolichospermum planctonicum UHCC 0167 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 170280 23 100.0 50 ....................... GTTCTATGTGGTTTAAATTTTGTAATTTTTACCAAAGTTTCTAACTAAGT 170207 23 100.0 50 ....................... AGCTATGAATCAATCTAAATTAGTAAAATCGGAATCGTTTCTAACTAAGT 170134 23 100.0 52 ....................... GTCAAATCCTAACGCCATACCTACACCTCACCATCTGCGTTTCTAACTAAGT 170059 23 100.0 51 ....................... ACGGTTGGTTTTCAAAAATAATAAAAGTCTGGTTTTTGTTTCTAACTAAGT 169985 23 100.0 52 ....................... GAACCTCCACGCTTGCGACACAGCCGCGTCGATGTTGTGTTTCTAACTAAGT 169910 23 100.0 51 ....................... TATTAATCATATTTGGGGAATCTTGAACTAATAAAAAGTTTCTAACTAAGT 169836 23 100.0 47 ....................... TTTGGTAAAGGAAACAAAACAAGATTTTTAATAGTTTCTAACTAAGT 169766 23 100.0 51 ....................... CCTTTTTCTAGGCCTGCGGCCGCCCGATGCCGCCTAAGTTTCTAACTAAGT 169692 23 100.0 54 ....................... AATAGTTCGCTATTTTTGTTTACTCGATTTACAGACTCAGGTTTCTAACTAAGT 169615 23 100.0 49 ....................... CACACATCTATTAAGGATATTATACCATGTTGAGAGTTTCTAACTAAGT 169543 23 100.0 48 ....................... ATTAAAGCGTTGTACCGCTCAATATAAAAGTCTTGTTTCTAACTAAGT 169472 23 100.0 54 ....................... ATTACGGACATAAATGGGAAGAGAATAGGATTCTTGAAAAGTTTCTAACTAAGT 169395 23 100.0 52 ....................... GTTATTAATCCCTTCTTCTTCCATCAGCGCTTTCAAATGTTTCTAACTAAGT 169320 23 100.0 51 ....................... ACAATATATCTCTGCGGCAATATCCTACTGTCTATGAGTTTCTAACTAAGT 169246 23 100.0 50 ....................... TCTACAATAGATACATCGTGACCTATAAATCTCTGAGTTTCTAACTAAGT 169173 23 100.0 52 ....................... CGCAACCAGGTTACTGGAGCTACGCAAGCAGGGAAAAAGTTTCTAACTAAGT 169098 23 100.0 48 ....................... TAAGCTCACACAAACACAAAAGCTTAATTGCTAAGTTTCTAACTAAGT 169027 23 100.0 52 ....................... CGACAAATCACTAAATATCAGAGATTTGAATGCGGCTAGTTTCTAACTAAGT 168952 22 95.7 54 ...........-........... TTCATTTAACATCAAATCAAAAAAGCGATCGCGCCAGAATGTTTCTAACTAAGT 168876 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ====================================================== ================== 20 23 99.8 51 AATCCCCGTAAGGGGACTGAAAC # Left flank : CCGTAAGGGGACTGAAACAGCTATGAATCAATCTAAATTAGTAAAATCGGAATCGTTTCTAACTAAGTAATCCCCGTAAGGGGACTGAAACGTCAAATCCTAACGCCATACCTACACCTCACCATCTGCNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTGATCAAGTCCGATGAGGATTCTATTAGAATGTATGTACTGGATGCCGGGAGTGTGAAAAGAACTATTACCTATGGTTCGGAAATTCCTAGACAAGAACAGTCTATCATTCTATAATTAGTACATCAGCTTAGATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCCAGGGGTCCGCCAAATCGTCAGAACCTTGATAATTAAATAATTTCAGCGTTTTGTTAGTTTCAGTTGGCAGTTGTTCCGAAGCCTGAAATCAGGTTTTTTCAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGCTTATGTTTCAGATAGCGGGGTTTCTAACTAAGT # Right flank : GATATCTCTCGGATGATTAAAAAACGAAATTGATAATTCNNNNNNNNNNNNNNNNNNNNNNNNNGAACAATAGCCCGCTCAATGTAATTATCCAAAGCAAAGGTTTCTAACTAATCCCCCGTCAGGAGACTGAAACATTTAAAATTTATTTTTTAGATTAGTAATCTGATTTGTTTCTAATTAAAGTGGATTTGATCAAATGATGGGGGATAATTTTAGCGGGCAAGATGCCCGCACCACAAGATTTTTATCATTAATATCTGTACTTGAGAATATCGAAAATGGATAATATTTTTCATTTACTTACTATTTTTTTGTATATATTTCGGAGAAGTCTACTAACTAATAACTAATCCAATCACTCCAACTACCAGCGTAAAGTTTAGCGGTAGAAATTCCAGCTATTGCTAAAGAAAGTAGATTTACACAAGCTGTAATACCAGAACCACAATAAACTAAAATTTCTTTAGTTGGATCTATATTTTCCCAACGTTGAGATT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 170859-170690 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILE01000006.1 Dolichospermum planctonicum UHCC 0167 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ================================================== ================== 170858 23 100.0 50 ....................... GTTCTATGTGGTTTAAATTTTGTAATTTTTACCAAAGTTTCTAACTAAGT 170785 23 100.0 50 ....................... AGCTATGAATCAATCTAAATTAGTAAAATCGGAATCGTTTCTAACTAAGT 170712 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ================================================== ================== 3 23 100.0 50 AATCCCCGTAAGGGGACTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTGATCAAGTCCGATGAGGATTCTATTAGAATGTATGTACTGGATGCCGGGAGTGTGAAAAGAACTATTACCTATGGTTCGGAAATTCCTAGACAAGAACAGTCTATCATTCTATAATTAGTACATCAGCTTAGATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCCAGGGGTCCGCCAAATCGTCAGAACCTTGATAATTAAATAATTTCAGCGTTTTGTTAGTTTCAGTTGGCAGTTGTTCCGAAGCCTGAAATCAGGTTTTTTCAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGCTTATGTTTCAGATAGCGGGGTTTCTAACTAAGT # Right flank : GTCAAATCCTAACGCCATACCTACACCTCACCATCTGCNNNNNNNNNNNNNNNNNNNNNNNNNAAAATTTGATCAAGTCCGATGAGGATTCTATTAGAATGTATGTACTGGATGCCGGGAGTGTGAAAAGAACTATTACCTATGGTTCGGAAATTCCTAGACAAGAACAGTCTATCATTCTATAATTAGTACATCAGCTTAGATTTTTGGCAAACCTAGAGCGGGGTCAAAAACCCCAGGGGTCCGCCAAATCGTCAGAACCTTGATAATTAAATAATTTCAGCGTTTTGTTAGTTTCAGTTGGCAGTTGTTCCGAAGCCTGAAATCAGGTTTTTTCAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGCTTATGTTTCAGATAGCGGGGTTTCTAACTAAGTAATCCCCGTAAGGGGACTGAAACGTTCTATGTGGTTTAAATTTTGTAATTTTTACCAAAGTTTCTAACTAAGTAATCCCCGTAAGGGGACT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.40, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //