Array 1 22236-23432 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000016.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 22236 31 100.0 35 ............................... CAATTTCGTATTTAACTTTTTTCTTGATTTTTTTC 22302 31 100.0 35 ............................... ATCGTACGATTATAGTAATTAAGCATTGTCTTTTC 22368 31 100.0 36 ............................... TGATATGACTCAGGCTGTTGACAAATAAAAAATTGT 22435 31 100.0 36 ............................... ACATTCCAAAATGTATCAATTGCATATGTATTTTCT 22502 31 100.0 41 ............................... TTTTCCACTGATTAAATCGTTCAACACCTCAATATCATTAT 22574 31 100.0 34 ............................... CAGGCCGAGGACCAATGGCTGGTGAGTTAGTTGT 22639 31 100.0 41 ............................... TTTATCACTATGTGCATCTAAACGTTTATCTTGTCTGGTGT 22711 31 100.0 37 ............................... CCAAATCTTCTCGAACTTCTTCAAATTTAAGCATCTT 22779 31 100.0 45 ............................... ATACTATACCTTTGTTCTAAACGTAACCGTCTTGCTAATTCGTCA 22855 31 100.0 38 ............................... AATTGTTTGTGTAGTAATTTATGTTGCTTATACAATCC 22924 31 100.0 35 ............................... TGATAAATGAGTAGTCAATATCACGTGTTTCTTCA 22990 31 100.0 37 ............................... TCCAATAGTATTAATAATACGTTCTCTTTCTGCTTCC 23058 31 100.0 41 ............................... CTAAAATTTCATTGGGATTATACCCATTATCTTTACACCAG 23130 31 100.0 35 ............................... TTTAACTGATTATTCAGTGCTTTACCAGCATTTTT 23196 31 100.0 38 ............................... AGGGCATAATTTATCTAATAAAAGAATTAACTCTATTT 23265 31 100.0 37 ............................... TTTATCTTTCCATAATCTTTCCATCCAACATTTGCAA 23333 31 100.0 38 ............................... TTTAACTATCTCATTTGAAACTTGCTTAACTACCTTTT 23402 31 93.5 0 ............................A.T | ========== ====== ====== ====== =============================== ============================================= ================== 18 31 99.6 38 ATTAGTTATTGTTCTTATAAAGGATTAACGC # Left flank : TATAATTACAAGAGAAGTATATAAGTTATCTAATTATATAGAAGGTAAAAGTAAATATTATAAACCTTATGTAATGGAGTGGTAAAAATGTATATTATTTGTACTTATGATGTAGCAGAAAAAAGATGTGTTAAAGTAATGAAAGTTTTGAGAAAATATATGTTTCATGTTCAAAATTCTGTTTTTGAAGGAGAGTTAACACCCTCTAAATTTAATGAATTAAAAGTTAAATTAGATAAAATAATAAATCCAGATGATGCAATATTGTTTTATTTTGTGTATGAAAACAAAAAAATAAAAAAAGATTATCTTGGAAAAGCACCAAAATCATCAAATATTATAATTTGATTTTCGACTATCCCATTGTTTTTACTGTATGAACAAGAATAAAATAGATGGTTTAAAGGAGGTAGTCGAGATTGTTTGATGAGTATACTATTGATTTTTTAATAGATACAAAGTATCATAGTATATATTTAGATTATTTCTAAATATATACT # Right flank : TTTATTTAATAATTTTTAAAATTATTATTTTTTAAAGATAGTTTTAAGATATTACTAAAAATAAAAAAGGATTAGTACCAATCTTGGTAACTAATCCAGTTTTCATATGGAAACATATGTTTCAGTTTATTACAGGTCTTTTCCTGGGAAATATAGTTTGATATTAGTTGATTTTTTTGTTTGAGTAAATCGTTGTTATAAAGATGTTTCATTGGTAAGATGGGGTTACTTTTACGATAGTAATGCCCAAAATATTTTAAGTTACTAGTTAAATTGATATCTTTTGTTATAGATGTAACAATTGCACTAGTCATTTTATGATGAGCATGACCATATTCACCCTTGGGATTATGGGTAACGATAGTTGCAAAGGTGTGATTAGATAGTATGTAATTTAAATCTTCTTCAATATCATGATAGACTTTTTTCCAATTATCACGCTTACCATTAGTTTTATCAGGATAGTCTAGAATAATTCCAGTATTATGAGTTTGTTCCAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGTTATTGTTCTTATAAAGGATTAACGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-93.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 8816-9391 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000051.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 8816 30 100.0 36 .............................. CCGATATTAGCAAAAACGGGCCAATAGTAATCAAAA 8882 30 100.0 35 .............................. CCAGAAACACGATTAGGAATGTATCTATACTCTGC 8947 30 100.0 37 .............................. ATCCATATATAACCAAATTATTAGGGTTGCTACTTTT 9014 30 100.0 36 .............................. CCGGGAAGCACCTCCATAACATCGAAAGGAACTAAA 9080 30 100.0 36 .............................. GTATGCTGAAATTCAATCTTACCGTGAGAATTGTGA 9146 30 100.0 54 .............................. AGAGAAGTAGTATAATCACTTCGCATTTCACCAGAAACACGATTAGGAACGTGT 9230 30 100.0 37 .............................. GAAATATACTGCGGATTTAAACGCTTGGTCTAATAAA 9297 30 100.0 35 .............................. GTTTTTTCAAAATATTTATTCATAATTTCAATTGC 9362 30 93.3 0 .........................A...T | ========== ====== ====== ====== ============================== ====================================================== ================== 9 30 99.3 38 GTTTAATAACAACATAGGATGTATTGAAAC # Left flank : TGATGGATGGTACATTTATTGAAAATAGAGAAGAATTTAGAGTTATATTTGAAGAATTAATGAATAAAAATGATGAATATTTTGTTTTAGCTGATTATGATGCTTATTGTAAAGCTCAAATGCAGGTAAGAGATTTATACCAAAATCGTTTAGGTTGGGCTAAAGTATGTTTAATTAACATAGCTAAGAGTGGTTTCTTCTCATCGGATCGTACTATACAAGAATATGTTGATGATATCTGGCATTTAGAAAAGGTAAAATTTTAGAAATATAAAAAGTTAAAGGAATTGGTTTATATGAAATCAGTTCCTTTATTATTGGTATAAATTTACCAGGTGAATTTATTAGTAAAACCTCTAAAAACGTTGGGAGAGTAAGGGATTAAGAGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGGTTTGAGGTATAATAGAATATGAAAAGTGGCTTATTTACTAG # Right flank : TTTAATTAATTATATAAAAATATAATAAGTTATATGCTTGTGAAGCTTTGTTTATAGGTTTTATAGGCAGTTTATTATCTTTGAACTCAAAAGCTATATAAATATAATCTTTATTTTTAATAAAGAAACAGTTTAGTTTTTTATTATTTAGTTTAAGATTATAAATGAATAAGTATAATTTAACTTGAATAATTGTATAATAAAAGGAAAGATAAGTATTTTTTATTGCATTGCCTTAGTTAAGAATATAGGCTATAATGAGGTAGAAAAATGGGGTGAAATTATGGAAAAAAGTGCCGTTAGAATGATTGCACAAATGATAGCTTTGAAAAAAATAGAAGTATTACTCTTAAAAAAGTACTATGAAGGTAATAGTCCAAGGTTTTATTTACGTGATTTAAATAGCGGTGATTTAAAAGAAATAAAAATTTCAGGTAAATATGTGGAAGAACAATTTGTACATTACTATTTCGATGATATTGAAATAGATTTTTGTCGTA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAGGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 3034-2548 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000012.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3033 30 100.0 36 .............................. CCGTGAGTCTTGTGATTTAGCTATGTTACTTAGAAA 2967 30 100.0 34 .............................. ACGATGTACCTATCAAAGATACAATAGGAAATTA 2903 30 100.0 36 .............................. TAGATTGCATTACCAGTACCAGTATTTTTCAAAAAA 2837 30 100.0 35 .............................. CGAGACATGCGAACAAATTCAGGAACAATATTGAA 2772 30 100.0 34 .............................. CCGCTAACACGATTAGGAACATATCTGTACTCTG 2708 30 100.0 35 .............................. ATAATGCATATATAGATATTCCGTGCGGACAGTGT 2643 30 100.0 36 .............................. TTTTTCCATTCAACACCTTTTCCTGTATCAGGGTTG 2577 30 70.0 0 ........G..G...GTAC.A....T...T | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 96.2 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : CACTTGTATTGATTCCATTTAATGTTAGTTATGATTTAAGCTTGATTGTTACGTCATTAGCTGCAGTTATATTTGGTGGAATTATTGTCTTAGGATTATCAAAAATTCAGTAGTATTAAGATCAATAATGCTTTTAGTATTATTGATTTTTTTTATGTGAAGTATTAGCGAATCAATTTTTTCATAAAAAGTATAGTTTTTTAATATTAGTGATTTTTAGATTTGATTAGTGGTAAATAGGTTATTAAGTTTTGAATATTTTAGCATTGATTTAATATTTTTAGTATTTATAATTTTTATATTTGAAAGAGTAGAAATCAGTGATTTTTACCAGCCGTATTTTGCAGTGAAATTTTTAAAACTGTTGGGAGAGTAAGAAGTTAAAGGGATTTTACTAAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTAGGGGTATAATAGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : AAATTTTTAGTAATAATTTTAAATGTCTTTATTTTGTTTTATAACAATATAATGTATTAAAAAATTGTGAATAACTTGTGACTAAAGTGAATATCTTTCAGTAAGGATAACTATTGTTATTTTTTGGTTCAGTTATATTATGTAATAAATCCTAAATTCTATGATTATTATCATAATATGATAACATCAATTTTAAATAGAGGATTATATTTTCTAAATTTGAGGTTGTTCATTAAGTCACAAAAATCTTACCTGAATTTTTTTATTTAATTGCTGATTTTCATTGTTAATGCTTTTTTGAGTTTATCAATATGATGAGATATTTTGTAATATAATTATTAAAAACTAATTTTTAATAAGACATGGAGTTATTTATTTTTATACTTTTGATCTTAGTTAATAATTTTGATACGATTATGTAAATGATGTTGATAATACTATTGGGGTAACTGTTAATGGTATATAAAGATTATTATTTGTATGGGAATTTTTTAAGTTTT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:0, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 44750-45445 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000011.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44750 36 100.0 30 .................................... ACATTTATTTCCATTTTTATAAGTGCCATT 44816 36 100.0 30 .................................... TAAAATTTTTTCATGGTATGCCTCTGTTGA 44882 36 100.0 30 .................................... ACAATGAAGAACTGTACGATATCACCGAAC 44948 36 100.0 30 .................................... TATTATTTCTTTGTTCCTAACAGATTGACT 45014 36 100.0 30 .................................... TTCCAATCCAAAAACAATAACATGATAGTG 45080 36 100.0 30 .................................... TCCAGAATTTTTAAGCGAAGCAATAGCATC 45146 36 100.0 30 .................................... TTCTTTCCAATGGTCCCAAGTCAACCTATT 45212 36 100.0 30 .................................... AATATCTGCGGGATAGTATAAGTAGTAGTA 45278 36 100.0 30 .................................... AGCATTTCGTATGATAAATCTAACGGGCAT 45344 36 100.0 30 .................................... ATACCATATGGAATATCTGACAAAATCAGG 45410 36 83.3 0 .........................GA.TTT....T | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Left flank : GTATTAGCAAAAATATATATGACAATAAAAAATAATATAATAGATGATATAGATAAAGAAACCACTCTTTTAAATGATATAAATAAAGTAAATGGTTTATTTATTGAGGAACTGGAAAATTATAATTTAGATTATTCTTATGAGACGAATATAAAGATAGAAAATTATTTAAAACTGTTAAATTTAAAAATAGTAAGTTCTGGAGAATCAGTATTTAATAAGATGATAGATTTAATTGAGATTTATTCAGAATTGTTTAATGAACATGTTATAATATTTATAAATATTATGTCGTATTTGAGTGATGATGAACTAGAGGAAGTCTTAAAATATAAGAGGTATAAAAAATTAAAATGTATTTTTATTGAGAATAATTTTACTAGAAATATAATAGCAAATAAGTATATAATAGATGATGATCTATATATGTATAAATTATAACACTATCTAAATTATGGATGAAGTCGTTATTCATTTATACTTTTAAAACCTAATTTGAG # Right flank : TCAATAGACTAAATCACATATTTAGAAGGACTTGGAGTAAAAATTATTTATAGTGATGCACAAATTAATAATATCATTATTGATAATAAGATTTTATGGATTCCAAATTATGGGTATTATGAAAAACAAAAGAATGTAAATGCATTTCGCATTAAAGATGTTAATGTGATTGAGGAAATTATTTCAATGATAAAAGATAATGATTGAGATGATTGATAATAAATGTGGTATACTATAGGGGGCATATAATATACTTATTATTTGGAGGTGTTTGGATGAAAAGGGTTCCAATTGGTGTAGAAGATTTTAAAGAACTGATTTCTAATAATTATTATGTAGATAAAAGTGAATTGATTAAAGATATGATAAATGAAAAAGTTGTTTTATATACTAGACCAAGAAGATTTGGTAAAACATTAAATATGAGTATGTTATATTATTTCTTTTCAATTAAACAAAAAGATAATGCTCATTTATTTAAGGGATTAAAAATAGAAAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGTAATTTAGAATAGTAGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 63728-64608 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000011.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 63728 30 100.0 36 .............................. CCAGTTAAATCAAATGGAATTTTTTCTTTAGAAGCA 63794 30 100.0 36 .............................. TTTGATTAATTAAATTAGTTAAATTCATAAAAATCC 63860 30 100.0 34 .............................. GCTAAATGCCAAGCGTCCAAAGATTGTTTATAAT 63924 30 100.0 35 .............................. CTGACGAGGTAAACAATGCCAAAAAACGTGAAGAG 63989 30 100.0 36 .............................. AGAGTCTAGATATAAGAGATATAGATAAAAAAGATA 64055 30 100.0 36 .............................. TCATTCTCAGTTGTTTGCAAATCGTTGGTTTTAGAC 64121 30 100.0 35 .............................. AAGTAGCAACCCTAATAATTTGGTTATATATGGAT 64186 30 100.0 35 .............................. CCTCCTTTAAAGCTCTCGAATTAATTTAGAAACAC 64251 30 100.0 35 .............................. GGACCTTTTTGAGGAGAAGGAAGAGCACTAGTGAA 64316 30 100.0 37 .............................. ATGTTTCTAAGTAACATGGCTAAATCACAAGACTCAC 64383 30 100.0 35 .............................. AAAGAGCTCCGCCCTGATAACTACGGTCGGGACTG 64448 30 100.0 36 .............................. CGACGAACATCTTCAGGGAGTCCGTTAAACAGATTT 64514 30 100.0 35 .............................. GCACCTTTTTATGTGAATAAGGATGGGTTATATGA 64579 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 100.0 36 GTTTAATAACAACATAAGATGTATTGAAAT # Left flank : GAAACCATTTATACCTTTTTCAATAAAGGATAAATATTAATGAAGATAAAAAATTATAATTATGTAATTGTATGTTACGATATTGGGGAAAAAAGAGTAAATAAAATATTTAAGATATGTAAAAAGTATCTTCCTCATTATCAATATTCTATTTTTAAAGGTCCCATTACACCTTCTAAATTGATTTTATTGAAAAAAGAATTACGAAAAGCTATAAATAAAGAAGAAGATTGTGTTAGTATTATTAAATTACAAAGTGAAGATTCGTTTGATGAAGAGGTTTTAGGAAGTCAAAAAGAAGAAAATAAAGATAGTTTAATTATATAATTTACCAGGTGAATTTATTAGTGAAACTTCTAAAACCATTGGGAGAGTAAGAAGTTAAAGGAATTTTACTAAAAAATATAAAAAATAAAATTGCCTGGTAAAAAAATATAAAAGTGTTGATATATAAAGGTTTTGAGGTATAATGGAATATGAAAAGTGGCTTATTTACTAGG # Right flank : TTATATTTTTTTTGCATTAGTTGTCTCAATGATTTTAGTTTAGATATATTAAAATTCTGTGAGGGTTAAACTTAAAATATTTATGATATATACTATAATTAGAGAGTAATTAATAATATGAATAGCATCATTTGATAAATTGTGGTAAACTTTGAAACATGGAGTGTAGGTATGAAGAATAAATATGTGGTTTTAGATTTTGAAACGACTGGAATAAATAAATATTATGATGAAGTAGTCCAAGTAGCAATAATTAATCAGAATGAAGAAATTTTAATTAATGAATTGTGTAAACCAAAACATCATTTTACTTGGGTAAATGCACAAAAAATACATGGAATATCTCCAGCCATGGTAAAAGATAAACCTAGTTTTGAAAGTTATATTGAGATGATAAAGAATATATTTGATAGTTGTGACTTTATTGTTTGCTACAATGTTGCATTTGAGCAAGGTATATTAAAGAATTATGGGATAAATATAGATAAATATAAATTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 67748-68819 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000005.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 67748 30 100.0 35 .............................. GCGTTCTAAGTTTGATATGTCCCATTCTGTTAAAA 67813 30 100.0 34 .............................. TAAGTAAGAGTAAGAAACATAGTACATTCATGAT 67877 30 100.0 35 .............................. AGAAGTATATGTTAAAGAAGCTAGTGCTGGTGACG 67942 30 100.0 35 .............................. CTATTTTTGTCATAAATATATTTGATAGTTTTTGG 68007 30 100.0 34 .............................. TACGTGAGAGTAAGAAACATAGTAGATTGATGGT 68071 30 100.0 36 .............................. AACAATTTATCAACATTCTTTGTAATCTCATTAAAG 68137 30 100.0 36 .............................. TACTCATCTGCGTCTTTGCCTTTACGTTTTTTAACA 68203 30 100.0 36 .............................. TTAGTCTTAGACAAAGAATAATTTTGATAAATTTCC 68269 30 100.0 36 .............................. GCTTTCTAGTGATTGGATAGAAGAAACACAGTCTAC 68335 30 100.0 36 .............................. GAATATGCAGGATAGTCTTTTTATGAATGATGAAAA 68401 30 100.0 35 .............................. CTTCATACCAGCAATTTGCAATATTTTTCCAATAG 68466 30 100.0 36 .............................. TACCGTTAATAATAAAAAGAGGGATTTCTGCTATAA 68532 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 68597 30 100.0 35 .............................. AGGTGGAGCTTTGCTTAAGGCTAATAAGTATCATG 68662 30 100.0 34 .............................. GAAAAATTATTTACTGTATTATTTTGAATATCAC 68726 30 100.0 36 .............................. AAATACAACTCTTGCTTATCTCCGTTGTATGTAATT 68792 28 86.7 0 ......................-..-..GT | ========== ====== ====== ====== ============================== ==================================== ================== 17 30 99.2 35 GTTTAATAACAACATAAGATGTATTGAAAC # Left flank : ATTTTTGTTAATTGTAGCAAACTATTATTGGGGTGATAATAATGAAGAATAATAATAGAAAACAGTCTAAATCAAATGAGGCTCAAAAAACTGCAGTTAACAATCAATGGACTAATAACAATACTAAATATTATCCAGATAATAGAGAACGTCAGGATGGACCTGGTGGTAATTAAGAACCTTTAATTAAAAGTTCTCAGGCTGTTAATAAAGTAAGTTTTTCAAACTGACTTTATCATACAGCCTTTTAAATTAAAAAAAGATTGGTTTTGGAATTTAGTTTTATCAAAATCACTTAGTAGATAATTTGTCAATAAATTTATTTTTTTACCAGGTGAATTTATTAGTGAAACCTCTAAAAATGTTGGGAGAGTAAGAGCTTAAGGGAATTTGACTGAAAAATATAAAAAAATAAAATTGCCTGGTAAAAAAATAGAAAAGTGTTGATATATAAAGGTTTTGGGGTATAATAGAATATGAAAAGTGGCTTATTTATTAGG # Right flank : TTTTAATTAAAAATATGTTATACAAAGCTCTAATGACAATATTTTTGTATTAGATTTTTTTTATATACCTTATATTTAGTATGTACTTTTATAAAAAAATGAACAAAATGATAACGTTTTCATTAAAAGTGTGTTAGAATGTATATACTATAGCTAATGATAAGGATGATTCTAAGTCAAAGGTTAAACTATTTTTATTATGTTTTTTATTATGTTTAGCCATTAGTATTGTCTGATGGTTTTTTATATAAGGAGGTAAAAATGAATAGTAGAATAGCAATACTTGGTATATTTGTTTATGAGATAGAACGTGCTAACGAAATAAATGATCTCTTACATGAATATAGTCAATATATTATAGGAAGAATGGGGATTCCATATAAAGATAAAGAAGTTTCAGTTATTTCAGTTATTCTAGATGGACCAAATGATATAATTGGTGCTATTTCTGGTAAAATTGGAATGATTAAAGGTGTTAGTGTTAAAGCACTATATTCAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAATAACAACATAAGATGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 21274-21773 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOIN01000007.1 [Clostridium] cocleatum strain DSM 1551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 21274 36 100.0 30 .................................... TCAATTCTGTTGAATGTCACTAATGTTGTT 21340 36 100.0 30 .................................... AGAACCATCTTCACAAAGTTCACCTAAACG 21406 36 100.0 30 .................................... AATAAATGTTTGATTAATATCAAGAATACA 21472 36 100.0 30 .................................... ATAATGATCATATTTTAACCAATGCTCGTC 21538 36 100.0 30 .................................... ACATTTTCATTGTTCTATTAACAATATCCA 21604 36 100.0 30 .................................... GCAACTGGTCGAGTATATTTATACATTAAT 21670 36 100.0 30 .................................... TGAACTTTGTGAAATCATCTGGATTTAACG 21736 36 86.1 0 ........................A...T....TTG | A,G [21760,21768] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 98.3 30 GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Left flank : AGAAATTAGTTAAACTGATTGAACCATATGTAGATATAGAAGGTTATAAATGTGATGAATATGATTTAACATATGAAGAAATCATTATTATTCAGTTAAAGCTTGTAAATGAAATAATAAATAATAACCAAAAATACGATTATATCTTTATTATTTTAGATATACCATGTCTTAGAAAAAAAATCCTGGATGCAATATTGCATCTTTCTAATTGTTTTTTATTTATATGTATTAATAGTAATAATCTCATTGAAAATATTAATTTGAAAGATATTTTGTTATTGGAAAATAAAGTAATAGATTTTGCTGATGAGGAAGAAGTATGTGAGATAATATGTAATAACTGTTATAAACCGATTTATTTATACGAGGTGGAAGAGTATATGAAAGAATATTTTATTAATAGTGGTAGTGAAAAGTGTAGCTTTATAAGAAAATTACTGAATAAATAATGATATATATTTATTAATTTTCAAAACTGTGTTAGTATTAGTTTTGAG # Right flank : GGTGGGAGGAATTGTACATTCTTATATTTGAATGATAAAAGAAAGTTAATTAATTAGATTTTAAAATATTATATTGCTTTGGAAATTGATATATGAGGGTATATAAATGTCAATTGAAAAAATAAAAAAATATTTTAATAAATACGGTAGTAAAAAGTGAATATAAAAGTTTGATTGTCTAGTGCTGCTATGGAATTAGCTACTCAGGCTTTGAATTATGAGTCTTATAGAATTGCAATAACACTTTTATTTAAGATTGATATTATGGTATTTTAATAGTTATATTAGGTGATACAAAAATTGATAATTTAATGGTAAAGCATTTTTTTTAAAGCAAAGGCAAATACGCTTTTTTTAGAAGAAATATTAGATTTGATAGATCATGATATAAGTAGTGTTCGTCGTTTTGTTATTAATGCTGATAAAGAATTATGATAGTATTTAAATTATGAATTTTGGATTGATGTTTGTAGGATTGCTTAATTGAATAAAAGGGTTAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATATGGAATTTTGCTAGAATTAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //