Array 1 633630-635975 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822039.1 Streptococcus thermophilus isolate STH_CIRM_1116 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 633630 36 100.0 30 .................................... TTTTACACTTGAGCACTTTTCTGATATCCG 633696 36 100.0 30 .................................... CCAACTTACTTGTTGACTCGTGGGAGTATG 633762 36 100.0 30 .................................... AATGCAAATTTGGATTCATGACAAAAGCAT 633828 36 100.0 30 .................................... TCAACATGGGATATTTCGTTGGTCAGGATG 633894 36 100.0 30 .................................... ATGATACACGAGTGATTGTTATTCGCCACA 633960 36 100.0 30 .................................... TCGCAGAAGCATTGAAAATGGCTTGGTTTG 634026 36 100.0 30 .................................... TGTTTTTGGTTGAAAACGGACAAAAGAACA 634092 36 100.0 31 .................................... CAAAAGGTACGTATGAAACTTATCCCCGCTG 634159 36 100.0 30 .................................... AGCTAAATTCCAAGCTGTTGAGGAAAAGAT 634225 36 100.0 30 .................................... GAATCGTAAATACAGGGCGACCCTACCCAG 634291 36 100.0 30 .................................... CCAATATTGAAAACTCGCAATGGAGAATTA 634357 36 100.0 30 .................................... CCAATTACATTAAAAACGGCGATTTAAAAG 634423 36 100.0 30 .................................... TGGATTGTTTTTGAAAAAATACCATTCTCG 634489 36 100.0 30 .................................... CTCTCTACTTAATTGCCACTCTTCCAGATG 634555 36 100.0 30 .................................... TGGATAGACTTTGACAATACAATATAGAAT 634621 36 100.0 30 .................................... AAATCAATTACAATAACAAATCACGATGTT 634687 36 100.0 30 .................................... AATTTAATGCACAGAATGTAAAATTCGAGA 634753 36 100.0 29 .................................... TCAAATCTTCATCAGTCAACACTTTTTTC 634818 36 100.0 30 .................................... CTATGTCAGGACTTAAGACATTGTTAGTCT 634884 36 100.0 30 .................................... ATGAAAAAGTTACAGTTACCATTTAGATTA 634950 36 100.0 30 .................................... ACAAAATAGATAGTTCTCAAAAAGTTTTTG 635016 36 100.0 30 .................................... TCAAATTTTCAATATTTTTCAGGTTAGGTA 635082 36 100.0 30 .................................... TAACATTTTCGATATTTTTCAAATTAGGTA 635148 36 100.0 30 .................................... AGGAAAATATTATGAGCGTACAAGATTCCA 635214 36 100.0 30 .................................... TTTATAACTCTGATGAAGTGTACTAAAAGT 635280 36 100.0 30 .................................... AATGGAAGCAAGCCTATCAAGATTTCGTTA 635346 36 100.0 30 .................................... CGATGTAAGTCGTTTCCAAACCCTCTGCTC 635412 36 100.0 30 .................................... TCCAACAGTTCGTGAACTGCAAGCGGTCAA 635478 36 100.0 30 .................................... AAGAAGCACACGCCCGCAACTCTAGCGAGC 635544 36 100.0 30 .................................... TCATGAAAATGATTGAATTCGTCGGTGACG 635610 36 100.0 30 .................................... GTCAATTGATACTGCAATCTCTTTAACATT 635676 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 635743 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 635809 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 635875 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 635940 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAGG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //