Array 1 56593-55183 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSE01000032.1 Streptomyces massasporeus strain JCM 4139 sequence32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 56592 29 100.0 32 ............................. CCGGACAATCCGGCGCACTGGTTCATGCGGGA 56531 29 100.0 32 ............................. GCGCCCCGCTCGTCTTCGGCCACGGGCACACC 56470 29 100.0 32 ............................. TTCCGGTTGATCAACTACCGGTACGAGCGGCA 56409 29 100.0 32 ............................. CGCTGCCGTCCCAGTAGCTGTGGGCCGTTCCA 56348 29 100.0 32 ............................. GTCGCGGTGTGCGCGCTTCCACACGGCCTCGG 56287 29 100.0 32 ............................. CCGGGCGACGCTGGAGCAGTCACGCTCCTCGT 56226 29 100.0 32 ............................. GGAGGGCGGCAACGGCCCCTCGTTGTTGGAAC 56165 29 100.0 32 ............................. TGGTCCGGCATCCTCGGCACGGGCGGCAAGCC 56104 29 100.0 32 ............................. CTCGGCGTCAACGGCGCCGCCGGCCGCACCTG 56043 29 100.0 23 ............................. GGTATGGGTCACTACCGGGCGGT Deletion [55992] 55991 29 100.0 32 ............................. GTCCGGCTACCGGTGGGCATGTGGGGTGCCTC 55930 29 100.0 32 ............................. GACTGCACCATCGACCGCCTGCCCACTCCCGG 55869 29 100.0 32 ............................. TACGGCTTCGTCCTGGGTGACGCGGAGGCGTT 55808 29 100.0 32 ............................. GACCCGTCGTCGTACGGATCGACGTCGACCAG 55747 29 100.0 32 ............................. ACCCTCGTCATGGTGCAGCGGGCCCCCGACTG 55686 29 100.0 32 ............................. GCCTCCACCGTGCTCGCCCAGCTCCAGCCTGA 55625 29 100.0 32 ............................. GGCCACGCCATCCTCTACAGCGACCCCAAGGG 55564 29 100.0 32 ............................. CCTGCTCAAGCCGTCCTACATGAGCGCAGCCG 55503 29 96.6 32 ............................T GACCGATCATGCGAGTACACATGAGGTGCATG 55442 29 100.0 32 ............................. GGGGCCTCCGTCCAGCACCATCCGGAACAGAC 55381 29 100.0 32 ............................. TCTGCTTCGCAGCCCGAACGGTGAACCGAGAA 55320 29 100.0 18 ............................. GCGCGGTCGGCGCAGTGG Deletion [55274] 55273 29 86.2 32 ..T..GG......T............... GCCTTCGTCGGCCCGGTCCTGGGCGGAACGCA G [55266] 55211 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 31 CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : CGGCATGAACTACGACGGGCCCGACGACTACGGGGATGAGCTCTGGTGACCGTCATCGTGCTCGCCAACTGCCCAGCGGGACTGCGAGGTTTCCTCACACGCTGGTTGCTTGAGGTCTCCGCAGGAGTCTTCGTGGGCAACCCTTCGGCCCGGATCCGCGATGTCCTCTGGGAAGAGGTCCGTACGTACGCAGGCCAGGGTCGGGCTCTACTGGCCCACACCACGAACAACGAGCAGGGGTACACCTTCCGCACCCACGAGCACACCTGGCACCCGACCGACCATGAGGGCATTATCCTGATCCACCGCCCCAACCCGGACGCCGCCACTTCACGCCCGAATCCCGAGAGCGCACGGCCGTCCGGTTGGAGCAAGGCCTCCAAGCGCCGACGTTTCGGCAGAGGCTGATGGGCCACGAGTCCCGATGAACCGATTTGCCCGAATCAAAGGAAGTGCACGAGAATCGACCTCAGAGCCGGCAAAGCCCCACGTCAGACAGT # Right flank : CACGCCGGCTTGGGGGATCCGGACGTGCTCGCTTGCTCCCCGCGTCTCCGATGGTCCACCATCGCTCAAATCTTCCGGGCCGGACGTGGCTCGGTCGCCAGTGCGTCCAGCCAGTGGACCAGAACATCGGGAAGGAGCCCGTAGGCTGCCTGTGCGGCGGCGATTGCCTGCTCGTAATTGACAGTTGAGGACTATAATCATCACAAGGCGGGGCCGTAGCACGGAGGTAGTGCGCCGCGACATCATCTCGGAGGACGTCGGTTCGAATCCGACCGCCCCGCCCCTTCTCCGCCCGCCTCCACGTCTCGCGAGGTTCGAGGCAATCTGGTTGATGCTAGGCAGTCGATCCAATGGAGTGCGCCACGTCAAGATCGACGACGCCGTCCTTGACGAAAGAAAGTAGGCCGTGGCCGGAGAGGTCGACGATGCTATCGAGCGGGCCGACCAGGAGTCGTTCACCCGACAGCCGCCGAAGACTCTCAAGGGCCAGATCGGCTACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67761-68215 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSE01000032.1 Streptomyces massasporeus strain JCM 4139 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67761 29 100.0 32 ............................. TCCAGGTGCAGCGGGTCGGCTTCGTCGCGGAG 67822 29 100.0 32 ............................. GGGGAGGGGCAGGCGAAGGTGAGGACGTTGAT 67883 29 100.0 32 ............................. GCGAACACGTGCAGGTACGCCTGCAGCCCGAA 67944 29 100.0 32 ............................. GACTCCCACAGCCGCGCCCCTTGGGGACAGCG 68005 29 96.6 32 ............................T GAAGCTCAACGAGGGCGACGCCAGGCGCCTCG 68066 29 100.0 32 ............................. AGCGATCCGTGGCGCCCCCGTCGGCTCCACCC 68127 28 89.7 32 ...-.T.....A................. CCAGTCTGGGCCAGTCGTACTCTCGTGCCCGG 68187 29 93.1 0 ...........A..T.............. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : AACGCGGGAGCCGCCTTGCCGACGTCATGCACGCCAGCGAGCCACACGGCAAGAGCACGCGCGTCCGCCTCACCCAGCGGCAACGCCTCCGCTACCAGCCTTCGCACGCCGCGAGGCAGCCACTCATCCCACAACAGCCCGGCCACCGCCGCACTGTCCTCCATATGCCGCCACAACGGCAGCCAGCCGTCGGTCTCTCGATCATGCTTCGCCCACACCGACCGAGCCGACTTACCAAGCCGACATAGCAAGCCAGAACAGGCACTCCCCCCACTGCTCATGAACGATTGATACAGGGAGTCGACGGCCCAGCACACCGGAATCGTTGAACAAGAGCATGCTCAAGGAAACCGCACACAGGCGGCATATGATGATCGGCTTACTGACGACCGCGAAGAGACACCCACAGGGCAGGGTGACAGCCAATGCTCCATTTGCCGGAATCCCTGGAACCCCACGAAACCACGCCTCCCCCGCGGTAGATTGCCAGGTCATCCAGT # Right flank : CGCCTGCTCCCAGCTCAAGGGCCAGGCCGGCCAAGACGGACACCGATACCCTCCAGGAATCGCTCCATGGTGTCGGGGAATCGAGCGCTGGCCCGGTTTGTGAGGTTGTCGCGTACAGGATGCAGACGTTCGACAGAGGCGCAATGAGGCTTATGCCGGAATCGATGAAAGTGCTGCAATCAGAGCCCTGCGCGAGAGAAGCTCGCAGGTGACCAAGTGTGCTCCCCGCACGCGCGTGGTCCCCCGAAGATGACCTTCGCGCCGGTCCAGAGCAGGGACCATCCCCGCACGCGCGGGGATGGTCCCTGGGTTGCTGCTGCGGACATTCGCCCGCCGTTGTGCTCCCCGCACGCGCGAGGATGGTCCCGCGTAGTACGTCGTACCGGCGGAGATCGGATAGTGCTCCCCGCACGCGCGGGGATGGTCCTGCCAGGGCCGACGGGCTATCAAACCGGACCTGCTGCTCCCCGCGGGGATGGTCCCGAGCAGCGGCGCCGCCA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 68492-68696 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMSE01000032.1 Streptomyces massasporeus strain JCM 4139 sequence32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 68492 28 85.7 33 ACCA........................ CTGGGTTGCTGCTGCGGACATTCGCCCGCCGTT 68553 28 96.4 33 ..................A......... CGCGTAGTACGTCGTACCGGCGGAGATCGGATA 68614 28 100.0 26 ............................ TGCCAGGGCCGACGGGCTATCAAACC 68668 28 71.4 0 .GA.CTG.T..C.C.............. | T [68676] ========== ====== ====== ====== ============================ ================================= ================== 4 28 88.4 31 GTGCTCCCCGCACGCGCGGGGATGGTCC # Left flank : CTTGGGGACAGCGCTGCTCCCCGCGCCCGCGGGGATGGTCCTGAAGCTCAACGAGGGCGACGCCAGGCGCCTCGCTGCTCCCCGCGCCCGCGGGGATGGTCCCAGCGATCCGTGGCGCCCCCGTCGGCTCCACCCCTGTTCCCGCACCCGCGGGGATGGTCCCCCAGTCTGGGCCAGTCGTACTCTCGTGCCCGGCTGCTCCCCGCACCTGCGGGGATGGTCCCGCCTGCTCCCAGCTCAAGGGCCAGGCCGGCCAAGACGGACACCGATACCCTCCAGGAATCGCTCCATGGTGTCGGGGAATCGAGCGCTGGCCCGGTTTGTGAGGTTGTCGCGTACAGGATGCAGACGTTCGACAGAGGCGCAATGAGGCTTATGCCGGAATCGATGAAAGTGCTGCAATCAGAGCCCTGCGCGAGAGAAGCTCGCAGGTGACCAAGTGTGCTCCCCGCACGCGCGTGGTCCCCCGAAGATGACCTTCGCGCCGGTCCAGAGCAGGG # Right flank : CGAGCAGCGGCGCCGCCAGCAGCAGCTAGACCAGCCTGCCGACCAGACCGCCTCGTCCGGCCAGCCGCTAGCTGTATTGACCTGAAGCGTTGTTCACACGGCTGATCGGTGGGTGGCCGCCGAGTGC # Questionable array : NO Score: 3.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:-0.09, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //